BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644766|ref|NP_206936.1| bacterioferritin
comigratory protein (bcp) [Helicobacter pylori 26695]
(152 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Heli... 303 1e-84
ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99] 43 4e-06
ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99] 35 0.001
ref|NP_223856.1| putative role in outermembrane permeabilit... 27 0.32
ref|NP_223136.1| putative [Helicobacter pylori J99] 27 0.32
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 25 0.94
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 2.1
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 23 2.7
ref|NP_223830.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter ... 22 7.9
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 22 7.9
ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(... 22 7.9
ref|NP_223621.1| putative cation efflux system protein [Hel... 22 7.9
ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Heli... 22 7.9
ref|NP_223069.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_222868.1| putative lipopolysaccharide biosynthesis p... 22 7.9
>ref|NP_222845.1| BACTERIOFERRITIN COMIGRATORY PROTEIN [Helicobacter pylori J99]
Length = 152
Score = 303 bits (776), Expect = 1e-84
Identities = 149/152 (98%), Positives = 151/152 (99%)
Query: 1 MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEF 60
MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEF
Sbjct: 1 MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEF 60
Query: 61 EKKNAVVVGISPDNAQSHQKFISQCSLNVILLCDEDKKAANLYKAYGKRMLYGKEHLGII 120
EKKNAVVVG+SPDN+QSHQKFISQCSLNVILLCDEDKK ANLYKAYGKRMLYGKEHLGII
Sbjct: 61 EKKNAVVVGVSPDNSQSHQKFISQCSLNVILLCDEDKKVANLYKAYGKRMLYGKEHLGII 120
Query: 121 RSTFIINTQGVLEKCFYNVKAKGHAQKVLESL 152
RSTFIINTQGVLEKCFYNVKAKGHAQKVLESL
Sbjct: 121 RSTFIINTQGVLEKCFYNVKAKGHAQKVLESL 152
>ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99]
Length = 198
Score = 42.7 bits (99), Expect = 4e-06
Identities = 30/80 (37%), Positives = 44/80 (54%), Gaps = 8/80 (10%)
Query: 6 VGQLAPDFR----LKNSD---GVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFS 58
V +LAPDF+ L N++ E+S K+L V+L+F+PKD T C E F
Sbjct: 3 VTKLAPDFKAPAVLGNNEVDEHFELS-KNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 59 EFEKKNAVVVGISPDNAQSH 78
+F +K V+G+S D+ Q H
Sbjct: 62 DFHEKGFNVIGVSIDSEQVH 81
>ref|NP_223708.1| THIOL PEROXIDASE [Helicobacter pylori J99]
Length = 166
Score = 34.7 bits (78), Expect = 0.001
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 4 LEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKK 63
L+VG APD +L N D E++L + V+ P C L+AK F+ +
Sbjct: 18 LKVGDKAPDVKLVNGDLQEVNLLKQGVRFQVVSALPSLTGSVCLLQAKHFNEQAGKLPSV 77
Query: 64 NAVVVGISPDNAQSHQKFISQCSLNVILLCDEDKKAANLYKAYGKR--MLYGKEHLG--I 119
+ V IS D S + + + + + + YKA+G+ +L GK L +
Sbjct: 78 SFSV--ISMDLPFSQGQICGAEGIKDLRILSDFR-----YKAFGENYGVLLGKGSLQGLL 130
Query: 120 IRSTFIINTQGVL 132
RS F+++ +GV+
Sbjct: 131 ARSVFVLDDKGVV 143
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 26.6 bits (57), Expect = 0.32
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 15 LKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGISPDN 74
L +D V++SL + +++ FY +D+ G + A S +++ KN G S DN
Sbjct: 105 LVKTDYVKLSLNEKY--EIIFPFYVQDSVSGIWVSADIASGKDQKYKIKNMSASGCSIDN 162
Query: 75 AQSH 78
H
Sbjct: 163 PIWH 166
>ref|NP_223136.1| putative [Helicobacter pylori J99]
Length = 255
Score = 26.6 bits (57), Expect = 0.32
Identities = 16/69 (23%), Positives = 36/69 (51%), Gaps = 5/69 (7%)
Query: 48 LEAKDFSALFSEFEKKNAVVVGISPDNAQSHQKFISQCSLNVILLCDEDKKAANLYKAYG 107
++ +DF+ L+ FE N++ + +S + A++ + + ++ D +KKA +L Y
Sbjct: 167 IDNQDFNELYDNFEHFNSIEIPMSLEEAKNLFEIQTHTTMQ-----DLEKKALDLSAPYY 221
Query: 108 KRMLYGKEH 116
+M K +
Sbjct: 222 HKMNDNKRY 230
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 25.0 bits (53), Expect = 0.94
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 103 YKAYGKRMLYGKEHLGIIRSTFIINTQGV 131
Y A G +L+G LG+ R F+ TQ V
Sbjct: 96 YIAGGIVILFGLHFLGVFRFAFLYKTQSV 124
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.9 bits (50), Expect = 2.1
Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 5/51 (9%)
Query: 59 EFEKKNAVVVGISPDNAQSHQKFISQCSLNVILLCDEDKKAANLYKAYGKR 109
E EK N++ I +H+ F+ C +L EDK+ YK Y K+
Sbjct: 119 EKEKNNSLKHTII---CNAHEFFLFDCK--DLLSLKEDKRIKKFYKNYAKK 164
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 23.5 bits (49), Expect = 2.7
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 22 EISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGISPD-----NAQ 76
EI K++ K++ PK P + K+ +E E KN + + D +
Sbjct: 184 EIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKNQIFIAEKNDTWIKTKRK 243
Query: 77 SHQKFISQC--------SLNVILLCDED 96
H+K + +++ L+C++D
Sbjct: 244 KHKKIVLDAGHGGKDCGAMSANLVCEKD 271
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 22.3 bits (46), Expect = 6.1
Identities = 22/95 (23%), Positives = 38/95 (39%), Gaps = 23/95 (24%)
Query: 37 FYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVG-----------ISPDNAQSH------- 78
FY + L+ +DF+A E++K+N + + PD Q+H
Sbjct: 291 FYRPSSIAYLELDPRDFNAT-EEWQKENLKIRSKAQAKMLEMRSLKPD-PQAHLSTSQSL 348
Query: 79 ---QKFISQCSLNVILLCDEDKKAANLYKAYGKRM 110
QK + S + ++ + +KK Y KRM
Sbjct: 349 LLVQKIFADVSKEIKVVANTEKKVEKAGYGYSKRM 383
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 22.3 bits (46), Expect = 6.1
Identities = 12/44 (27%), Positives = 22/44 (49%), Gaps = 9/44 (20%)
Query: 1 MEKLEVGQLAPD---------FRLKNSDGVEISLKDLLHKKVVL 35
+EKL + +A D F NS G+E++ DL+ +++
Sbjct: 175 LEKLMIVYIALDKEKDDPQLIFESMNSKGIELTQTDLIRNYIIM 218
>ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter pylori J99]
Length = 290
Score = 21.9 bits (45), Expect = 7.9
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 1 MEKLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPK 40
++K G A ++RL+ S + + +L KK ++ YP+
Sbjct: 185 LKKALEGFFAENYRLRYSGSMVADVHHVLVKKGGMFSYPQ 224
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 21.9 bits (45), Expect = 7.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 101 NLYKAYGKRMLYGKEHLGIIRSTFIINTQGVLEK----CFYNVKAKGHAQKVLESL 152
N +K +YGK +IINT +L + K K H +K+ E+L
Sbjct: 85 NQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIFKKVKNH-KKIQENL 139
>ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE)
PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE
TRANSFERASE [Helicobacter pylori J99]
Length = 353
Score = 21.9 bits (45), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 115 EHLGIIRSTFIINTQGVLEKCFY 137
E+ + + NTQGV+ K F+
Sbjct: 46 ENSPLFSERYFFNTQGVVNKSFF 68
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 21.9 bits (45), Expect = 7.9
Identities = 10/38 (26%), Positives = 21/38 (54%)
Query: 3 KLEVGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPK 40
+ +G + D + ++G+ +SLKD K+++ Y K
Sbjct: 265 RTRLGFVTKDGVGETTEGLVLSLKDANTKEIITQVYQK 302
>ref|NP_223499.1| THIAMINE PHOSPHATE PYROPHOSPHORYLASE [Helicobacter pylori J99]
Length = 217
Score = 21.9 bits (45), Expect = 7.9
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 58 SEFEKKNAVVVGISPDNAQSHQKF 81
S EK + GI+ DNA QKF
Sbjct: 168 SGVEKPLIAIGGITTDNASKLQKF 191
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 21.9 bits (45), Expect = 7.9
Identities = 14/36 (38%), Positives = 16/36 (43%), Gaps = 10/36 (27%)
Query: 40 KDNTPGCTLEAKDFSALFS----------EFEKKNA 65
K N G T++ KDF FS EF K NA
Sbjct: 393 KPNETGYTIKFKDFQKRFSLDKQERIYRIEFYKNNA 428
>ref|NP_222868.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 377
Score = 21.9 bits (45), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 6 VGQLAPDFRLKNSDGVEISLKDLLHKKVVLYFYPKDN 42
VG L + +L +D +E L +L H+K F P+ +
Sbjct: 214 VGFLIVNLKLWRADKLEEHLLNLTHQKGQCVFCPEQD 250
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.137 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,339
Number of Sequences: 1491
Number of extensions: 7883
Number of successful extensions: 32
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 17
length of query: 152
length of database: 494,079
effective HSP length: 70
effective length of query: 82
effective length of database: 389,709
effective search space: 31956138
effective search space used: 31956138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)