BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646203|ref|NP_208145.1| hypothetical protein
[Helicobacter pylori 26695]
(315 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223990.1| putative [Helicobacter pylori J99] 533 e-153
ref|NP_223331.1| putative [Helicobacter pylori J99] 65 3e-12
ref|NP_224090.1| putative [Helicobacter pylori J99] 30 0.082
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 0.24
ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobact... 27 0.53
ref|NP_222756.1| DNA transformation competancy [Helicobacte... 27 0.90
ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [... 26 1.2
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 25 2.0
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 25 2.6
ref|NP_223714.1| putative [Helicobacter pylori J99] 25 2.6
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 25 2.6
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 25 2.6
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 25 2.6
ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 25 2.6
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 25 3.4
ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 24 4.5
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 24 4.5
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 24 4.5
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 24 5.8
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 24 5.8
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 24 5.8
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 24 5.8
ref|NP_224051.1| putative [Helicobacter pylori J99] 23 7.6
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 23 7.6
ref|NP_223856.1| putative role in outermembrane permeabilit... 23 10.0
ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helico... 23 10.0
ref|NP_223560.1| putative [Helicobacter pylori J99] 23 10.0
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 533 bits (1374), Expect = e-153
Identities = 258/293 (88%), Positives = 270/293 (92%), Gaps = 2/293 (0%)
Query: 23 LSLIHEAKFLSTCYPPPPTNPKTPNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGL 82
L E F PPPPTNPKTPNQTRKNVALNTPRQLKNNDKSWTQCFISS +NDQGL
Sbjct: 778 LERARENTFKHMLPPPPPTNPKTPNQTRKNVALNTPRQLKNNDKSWTQCFISSQLNDQGL 837
Query: 83 SSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYR 142
SSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHY+H FEPLEVLGYIYALLYSP+YR
Sbjct: 838 SSGGNGAGVNYPLYQFKHPNYTENFTPEFRSFIDKHYSHHFEPLEVLGYIYALLYSPHYR 897
Query: 143 KRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESC 202
KRYEDFLK DYPKILFTNNKDLFRALSLLGIELIGLHVLN+ESLN+SF KLKD TIGES
Sbjct: 898 KRYEDFLKADYPKILFTNNKDLFRALSLLGIELIGLHVLNRESLNHSFEKLKDPTIGESY 957
Query: 203 YKEEH--NPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNEP 260
YKE H NPIIKKPSH + +QRLYINHSAYFRGVS+EI+DY IGGYGVLDKYLKSHKNEP
Sbjct: 958 YKEAHDRNPIIKKPSHKKLEQRLYINHSAYFRGVSEEIHDYMIGGYGVLDKYLKSHKNEP 1017
Query: 261 CDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKALMQEILQNPPPPP 313
CDFDHV+NIIK+IARTIEIQKTLGFLTSDLPHLKGNDSKAL+QEILQNPPPPP
Sbjct: 1018 CDFDHVSNIIKIIARTIEIQKTLGFLTSDLPHLKGNDSKALIQEILQNPPPPP 1070
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 64.7 bits (156), Expect = 3e-12
Identities = 54/217 (24%), Positives = 102/217 (46%), Gaps = 23/217 (10%)
Query: 46 PNQTRKNVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTE 105
P+++ +NV +NT N K ++ +S I+D L S YPLY +
Sbjct: 920 PDKSARNVVINTG---VGNGKDFS-ALVSDFISDFSLISPNQA----YPLYYYDDLGNRY 971
Query: 106 NFTPEFR-SFIDKHY-NHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKD 163
N + + +HY +++ E+ YIYA+ + Y ++Y++ L + P+I + +
Sbjct: 972 NAISGYALNLFRRHYKDNAITEEEIFYYIYAIFHHKGYLEKYKNSLAKEAPRIALSED-- 1029
Query: 164 LFRALSLLGIELIGLHVLNQESLNYSFGKLKDA---TIGESCYKEEHNPIIKKPSHNEPD 220
F+ LS+LG EL LH LNY G++ + + ES E + +I+ + D
Sbjct: 1030 -FKELSMLGKELAELH------LNYESGEMHTSVKHNLLESAEMEGYYDVIQMKKDKKGD 1082
Query: 221 QRLYINHSAYFRGVSQEIYDYRIGGYGVLDKYLKSHK 257
R+ NH + ++ +DY + G +D ++ ++
Sbjct: 1083 -RIKYNHHITITQIPKKAFDYVVNGKSAIDWVIERYQ 1118
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 30.0 bits (66), Expect = 0.082
Identities = 25/101 (24%), Positives = 43/101 (41%), Gaps = 11/101 (10%)
Query: 60 QLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFKHPNYTENFTPEF-RSFIDKH 118
QL+N K++ + H+N S ++ ++T T EF R +
Sbjct: 511 QLENYHKAYFHFLRAFHLNSADYLSA---------VFAVLASHFTHEDTTEFLREITENF 561
Query: 119 YNHSFEPLEVLGYIYALLYSPNYRKRYE-DFLKNDYPKILF 158
Y+H F + +L+ NYR ++ D+LKN K+ F
Sbjct: 562 YSHDFSSPTQKALLSSLIAYLNYRTNWDMDWLKNAPKKLPF 602
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 28.5 bits (62), Expect = 0.24
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 252 YLKSHKNEPCDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKALMQEILQN 308
Y S+ E +H++ +V R E+ + G D PH ++L+ ++L N
Sbjct: 1198 YQLSNLKEDIKIEHLSGAYEVFVRNNELNELYGIRHKDKPHSYKVPFESLLNKVLNN 1254
>ref|NP_223778.1| ATP synthase F1, subunit gamma [Helicobacter pylori J99]
Length = 301
Score = 27.3 bits (59), Expect = 0.53
Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 46/173 (26%)
Query: 122 SFEPLEVLGYIYALLYSPNY-------RKRYEDFLKNDYPKILFTNN---KDLFRALSLL 171
SF +EVL I L PNY +K ED+L K++ +N + + + +
Sbjct: 135 SFNGIEVLDKINNLSSMPNYERAQEFMKKVVEDYLSGKTDKVIIIHNGFKNMITQEIRVK 194
Query: 172 GIELIGLHVLNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPD-----QRLYIN 226
I IG +++Q E I +PS +E + Y+
Sbjct: 195 TILPIGYKIIHQNPQP----------------SETQETITSEPSGSEDEILDSLAEKYVE 238
Query: 227 HSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNEPCDFDHVTNIIKVIARTIEI 279
+S Y Y ++D H D TN K + +T+ I
Sbjct: 239 YSLY---------------YALIDSLAAEHSARMQAMDTATNNAKDLVKTLTI 276
>ref|NP_222756.1| DNA transformation competancy [Helicobacter pylori J99]
Length = 247
Score = 26.6 bits (57), Expect = 0.90
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 122 SFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHVL 181
SF L + + ++L + DFL D + + L LIG +VL
Sbjct: 61 SFIALVLAIVLISILPLQKTEHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVL 120
Query: 182 NQESLN 187
N+ES+N
Sbjct: 121 NRESIN 126
>ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [Helicobacter pylori J99]
Length = 430
Score = 26.2 bits (56), Expect = 1.2
Identities = 14/54 (25%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Query: 117 KHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRALSL 170
++YN + E L +G ++ ++ N + ++D LK+D + K LF+ + L
Sbjct: 341 QNYNIALETLN-MGSMFGFFFNENAVRDFDDALKSDTEMFAKFHQKMLFKGVYL 393
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 25.4 bits (54), Expect = 2.0
Identities = 24/102 (23%), Positives = 38/102 (36%), Gaps = 2/102 (1%)
Query: 41 TNPKTPNQTRK-NVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFK 99
+NPK K + P +L N K+ F S N S A ++ L
Sbjct: 127 SNPKLAQALEKMQEPITNPLELVENLKNLELQFSQSQ-NSMLSSLSSQIAQISNSLNALD 185
Query: 100 HPNYTENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNY 141
+Y++N + + + Y H F + G+ Y L Y Y
Sbjct: 186 PSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGY 227
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 25.0 bits (53), Expect = 2.6
Identities = 20/63 (31%), Positives = 29/63 (45%), Gaps = 12/63 (19%)
Query: 248 VLDKYLKSHKNEPCDFDHVTNIIKVIARTIEIQKTL---GFLT-------SDLPHLKGND 297
+ D++LK EP FD + + K + + TL G + DLPHLK ND
Sbjct: 98 IQDEFLKLF--EPSPFDALRGLFKSVKTRPKHPFTLFSAGVFSFEMLNFFEDLPHLKAND 155
Query: 298 SKA 300
+ A
Sbjct: 156 NTA 158
>ref|NP_223714.1| putative [Helicobacter pylori J99]
Length = 248
Score = 25.0 bits (53), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (52%), Gaps = 1/47 (2%)
Query: 214 PSHNEPDQRLYIN-HSAYFRGVSQEIYDYRIGGYGVLDKYLKSHKNE 259
P + + +Y N + AY + ++YD+ I G V K K+H++E
Sbjct: 100 PKASIENSPIYKNCYEAYVKQRIHDLYDFYIEGKKVKRKIKKAHEHE 146
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 25.0 bits (53), Expect = 2.6
Identities = 17/63 (26%), Positives = 28/63 (43%)
Query: 186 LNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYDYRIGG 245
++YS K E YKE +K +++E +RL ++ A +EI D G
Sbjct: 226 VHYSEISHKGPVNPEKYYKEGDEVYVKAIAYDEEKRRLSLSIKATIEDPWEEIQDKLKPG 285
Query: 246 YGV 248
Y +
Sbjct: 286 YAI 288
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 25.0 bits (53), Expect = 2.6
Identities = 24/102 (23%), Positives = 38/102 (36%), Gaps = 2/102 (1%)
Query: 41 TNPKTPNQTRK-NVALNTPRQLKNNDKSWTQCFISSHINDQGLSSGGNGAGVNYPLYQFK 99
+NPK K + P +L N K+ F S N S A ++ L
Sbjct: 122 SNPKLVQALEKMQEPITNPLELVENLKNLELQFSQSQ-NSMLSSLSSQIAQISNSLNALD 180
Query: 100 HPNYTENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNY 141
+Y++N + + + Y H F + G+ Y L Y Y
Sbjct: 181 PSSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGY 222
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 25.0 bits (53), Expect = 2.6
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 136 LYSPNYRKRYEDFLKNDYPKIL--FTNNKDLFRAL 168
LY ++ KRY ++ K+ PKI+ + N KDL++ +
Sbjct: 358 LYGQDFEKRYLEYEKD--PKIIKEYINAKDLWKKI 390
>ref|NP_223122.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 298
Score = 25.0 bits (53), Expect = 2.6
Identities = 41/174 (23%), Positives = 64/174 (36%), Gaps = 44/174 (25%)
Query: 73 ISSHINDQGLSSGGNGAGVNYPLYQFK----------HPNYTE-----NFTPEFRSFI-- 115
++SH+N+ G++ +Y L FK H Y E F + FI
Sbjct: 71 MASHVNEDGVNKPIQAGARDYILKPFKMDELLRKIQYHRAYQEMTARLGFYENYLDFIHA 130
Query: 116 ------DKHYNHSF---EPLEVLGYIYALLYSPNYRKRYEDF-LKNDYPKILFTNNKDLF 165
D Y F P + L Y L Y+ + + F LK+ K L+ N L
Sbjct: 131 ELPLPRDFSYRPPFIIHAPSQELANAYLLQYAKERQMDFSFFSLKDTTWKELYKNKDKLE 190
Query: 166 RALSLLGIELIGLHVLNQESLNYSFGKLKDATIGESCYKEEHNPIIKKPSHNEP 219
R ++ +E L ++ +LK + SC PI+ +H EP
Sbjct: 191 RPFYIMHLE-----ELKKDE------QLKLLELARSC------PIVLSYTHKEP 227
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 24.6 bits (52), Expect = 3.4
Identities = 17/60 (28%), Positives = 24/60 (39%), Gaps = 4/60 (6%)
Query: 108 TPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPNYRKRYEDFLKNDYPKILFTNNKDLFRA 167
TP F + + N + L L YI L Y N ++ F KI NN + +A
Sbjct: 168 TPHFVKDFETNKNFPSQHLNALKYIEMLFYMKNLERKKLQF----NAKIACPNNSERLKA 223
>ref|NP_223894.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 198
Score = 24.3 bits (51), Expect = 4.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 40 PTNPKTPNQTRKNVA--------LNTPRQLKNNDKS 67
PTNP P QT K + + +P+Q + N+K+
Sbjct: 119 PTNPLMPTQTPKELPKEPAKTPFVESPKQNEKNEKN 154
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 24.3 bits (51), Expect = 4.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 227 HSAYFRGVSQEIYDYR 242
H A+F G+ +Y+YR
Sbjct: 317 HEAFFEGIYPSVYEYR 332
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 24.3 bits (51), Expect = 4.5
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 119 YNHSFEPLEVLGYIY-ALLYSPNYRKRY 145
YNH F P +VLG Y A L Y RY
Sbjct: 90 YNHFFHPDKVLGLRYFAFLDWQGYGMRY 117
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 23.9 bits (50), Expect = 5.8
Identities = 29/123 (23%), Positives = 46/123 (36%), Gaps = 10/123 (8%)
Query: 189 SFGKLKDATIGESC--YKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYDYRIGGY 246
S G + D T G C KE N + E Y N R +SQ I +++
Sbjct: 389 SAGVINDNTYGSGCAFVKETLNSL-------EQHTAYYGNQVNQDRALSQTILNFK-EAL 440
Query: 247 GVLDKYLKSHKNEPCDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKALMQEIL 306
L K+ + + + ++ + T G LT L K N + + QE+
Sbjct: 441 STLGNDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTVAQELG 500
Query: 307 QNP 309
+NP
Sbjct: 501 KNP 503
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 23.9 bits (50), Expect = 5.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 68 WTQCFISSHINDQGLSSGGNGAGVNY 93
W ++S I GLS GG G ++Y
Sbjct: 358 WALIVLASMIGQVGLSGGGFGFSMHY 383
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.9 bits (50), Expect = 5.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 41 TNPKTP---NQTRKNVALNTPRQLKNNDKS 67
TNP T N + N + N P L NND+S
Sbjct: 2210 TNPCTTAQNNASSSNASNNAPIALNNNDES 2239
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 23.9 bits (50), Expect = 5.8
Identities = 29/123 (23%), Positives = 46/123 (36%), Gaps = 10/123 (8%)
Query: 189 SFGKLKDATIGESC--YKEEHNPIIKKPSHNEPDQRLYINHSAYFRGVSQEIYDYRIGGY 246
S G + D T G C KE N + E Y N R +SQ I +++
Sbjct: 389 SAGVINDNTYGSGCAFVKETLNSL-------EQHTAYYGNQVNQDRALSQTILNFK-EAL 440
Query: 247 GVLDKYLKSHKNEPCDFDHVTNIIKVIARTIEIQKTLGFLTSDLPHLKGNDSKALMQEIL 306
L K+ + + + ++ + T G LT L K N + + QE+
Sbjct: 441 STLGNDSKAINSGISNLPNAKSLQNMTHATQNPNSPEGLLTYSLDTSKYNQLQTVAQELG 500
Query: 307 QNP 309
+NP
Sbjct: 501 KNP 503
>ref|NP_224051.1| putative [Helicobacter pylori J99]
Length = 259
Score = 23.5 bits (49), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (49%)
Query: 29 AKFLSTCYPPPPTNPKTPNQTRKNVALN 56
AK+ T + P TN KTP ALN
Sbjct: 144 AKYAQTFHSNPYTNQKTPTSDLYYPALN 171
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 23.5 bits (49), Expect = 7.6
Identities = 11/19 (57%), Positives = 12/19 (62%)
Query: 240 DYRIGGYGVLDKYLKSHKN 258
DY GGYGVL + L S N
Sbjct: 48 DYAQGGYGVLFERLDSSDN 66
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 23.1 bits (48), Expect = 10.0
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 92 NYPLYQFKHPNYTENFTPEFRSFIDKHYNHSFEPLEVLGYIYALLYSPN 140
N P Y FK+ +++N ++ + + + G +Y +++PN
Sbjct: 508 NIPYYTFKNGLFSQNMYALSTQALNSYTSPLLRDYDYQGRLYDSVWNPN 556
>ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 524
Score = 23.1 bits (48), Expect = 10.0
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 141 YRKRYEDFLKNDYPKILFTNNKDLFRALSLLGIELIGLHVL----------NQESLNYSF 190
Y K +ED L+ D I NK+ + IE + V+ N+++L +
Sbjct: 187 YTKNFEDILQCDMITIHTPKNKETINMIGAKEIERMKKGVILINCARGGLYNEDALYEAL 246
Query: 191 GKLKDATIGESCYKEE---HNPIIKKPS 215
K +G + +E HN ++ P+
Sbjct: 247 ETKKVRWLGIDVFSKEPGIHNKLLDLPN 274
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 23.1 bits (48), Expect = 10.0
Identities = 8/9 (88%), Positives = 9/9 (99%)
Query: 41 TNPKTPNQT 49
TNPKTPN+T
Sbjct: 125 TNPKTPNET 133
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,924
Number of Sequences: 1491
Number of extensions: 20578
Number of successful extensions: 82
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 28
length of query: 315
length of database: 494,079
effective HSP length: 78
effective length of query: 237
effective length of database: 377,781
effective search space: 89534097
effective search space used: 89534097
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)