BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645966|ref|NP_208146.1| putative adenine specific
DNA methyltransferase [Helicobacter pylori 26695]
(835 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223990.1| putative [Helicobacter pylori J99] 1286 0.0
ref|NP_223331.1| putative [Helicobacter pylori J99] 117 2e-27
ref|NP_222939.1| putative [Helicobacter pylori J99] 32 0.086
ref|NP_222912.1| putative [Helicobacter pylori J99] 31 0.15
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 30 0.19
ref|NP_223209.1| cag island protein [Helicobacter pylori J99] 30 0.33
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 29 0.56
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 28 0.95
ref|NP_223238.1| putative [Helicobacter pylori J99] 28 0.95
ref|NP_223973.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_223621.1| putative cation efflux system protein [Hel... 28 1.2
ref|NP_223180.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_224173.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 27 1.6
ref|NP_224042.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 27 2.1
ref|NP_224044.1| putative [Helicobacter pylori J99] 27 2.8
ref|NP_224043.1| putative [Helicobacter pylori J99] 27 2.8
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 27 2.8
ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 27 2.8
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 26 3.6
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 26 4.7
ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDI... 26 4.7
ref|NP_223069.1| putative [Helicobacter pylori J99] 26 4.7
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 6.2
ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylor... 25 6.2
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_223368.1| putative [Helicobacter pylori J99] 25 6.2
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 25 6.2
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 8.0
ref|NP_224077.1| putative [Helicobacter pylori J99] 25 8.0
ref|NP_224003.1| putative [Helicobacter pylori J99] 25 8.0
ref|NP_223954.1| 50S RIBOSOMAL PROTEIN L2 [Helicobacter pyl... 25 8.0
ref|NP_223659.1| putative [Helicobacter pylori J99] 25 8.0
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 25 8.0
ref|NP_223384.1| putative [Helicobacter pylori J99] 25 8.0
ref|NP_223186.1| putative [Helicobacter pylori J99] 25 8.0
ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFER... 25 8.0
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 8.0
ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Heli... 25 8.0
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 1286 bits (3328), Expect = 0.0
Identities = 663/837 (79%), Positives = 707/837 (84%), Gaps = 48/837 (5%)
Query: 1 MLKEYLESIKDLTPEKNELTHRPSLYNLLNQLKNHFNKEFKIEHEPER-KQGSQPDFRVS 59
MLKEYLESIKDLTPE NELTHRPSLYNLL LKN F KE KIEHEP R KQG QPDFRVS
Sbjct: 1 MLKEYLESIKDLTPESNELTHRPSLYNLLKNLKNDFKKELKIEHEPNRDKQGGQPDFRVS 60
Query: 60 YQGINIGYIENKRAGTNLSQLLKSEKSDQILKYLELNPNLMLTDYLNFMWVGKDENNEPL 119
YQG+NIGYIENKR GT+L+QLL+S DQILKYLELNPNLMLTDYLNF+WVGKDE N+P
Sbjct: 61 YQGLNIGYIENKRVGTDLNQLLES---DQILKYLELNPNLMLTDYLNFVWVGKDEENKPS 117
Query: 120 IKKEISVASLDELSKPLKPNPQTERDLIELFKSFFNHEAAPITNAKDFATHLSPRTKYLK 179
K++IS+ASL+EL K LKPNPQTERDLIELF+ FFNHEAAPITNAKDFA LS T+YLK
Sbjct: 118 TKRKISIASLEELPK-LKPNPQTERDLIELFRGFFNHEAAPITNAKDFANALSAPTRYLK 176
Query: 180 DALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLTYSLFLAKLNHPSEKINLDN 239
DALI YQ+ QVSSIF NFKEYLYEELSFEDFSDA AQTLTYSLFLAKLNHP EKI+L+N
Sbjct: 177 DALIAYQKDDQVSSIFKNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKIDLNN 236
Query: 240 VRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDDKDPYLH 299
VRS IPKNFAVIREMADFLKKLD I+EIQWLLNEIL INHVDM I+KDLNDDKDPYLH
Sbjct: 237 VRSSIPKNFAVIREMADFLKKLDAIQEIQWLLNEILILINHVDMGPIIKDLNDDKDPYLH 296
Query: 300 FYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKL 359
FYETFLS YDPKLRE KGVYYTPDSVV+FIINALDSLLKTHFKDAPLGLKSALDN+NIKL
Sbjct: 297 FYETFLSAYDPKLREKKGVYYTPDSVVEFIINALDSLLKTHFKDAPLGLKSALDNKNIKL 356
Query: 360 LDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 419
LDFATGTGTFLLEAFRKALE RKTSDGG STKEDKYQNLLKQFYGFEYLIAPYAIAHLNL
Sbjct: 357 LDFATGTGTFLLEAFRKALEVRKTSDGGASTKEDKYQNLLKQFYGFEYLIAPYAIAHLNL 416
Query: 420 SQAFKEEFKKPLKENDALQIILTNTLIQPSEIIAYRGLSPIFEKELSNAQEIKKNENILI 479
SQAFKEEFKKPLKEND L+IILTNTLIQPSEIIAYRGL+PIFEKELSNAQEIKKNENILI
Sbjct: 417 SQAFKEEFKKPLKENDTLKIILTNTLIQPSEIIAYRGLNPIFEKELSNAQEIKKNENILI 476
Query: 480 ITGNPPYSGASENKGLFEWEVKATYGIDPKFQTIEIEKNVKLADKIQTLLSSVQIQKQSG 539
ITGNPPYSGASENKGLFEWEVKATYGI+P+FQTIEIEKNVKL DKIQTLL +VQ QK+SG
Sbjct: 477 ITGNPPYSGASENKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLKNVQKQKESG 536
Query: 540 SKNDLKKLKSLHSKYKLQDEKNPKWLLDDYVKFMRFAQNKIESLGHGLFGFISNNAFLDN 599
SKN LK+LK+LHSKYKLQ EKNPKWLLDDYVKFMRFAQNKIE LGHGLFGFISNNAFLDN
Sbjct: 537 SKNALKELKNLHSKYKLQKEKNPKWLLDDYVKFMRFAQNKIELLGHGLFGFISNNAFLDN 596
Query: 600 PTFRGLRRSLLECYDELYILNLHGNARKKEKTPQGAKDENVFNIKQGVSINLFVKNPQVV 659
PTFRGLRRSLLECYDELYILNLHGNAR+KE+TPQGA DENVFNI QGVSINLFVK Q
Sbjct: 597 PTFRGLRRSLLECYDELYILNLHGNARRKEETPQGATDENVFNIMQGVSINLFVKKAQAT 656
Query: 660 KQKIHYYDVYGQRTEKYAFLAQNDLNSIEWLEIAPRGPFYLLLPLETPLLDEYEQGFSVQ 719
K KI YYDVYG+R EKYAFLAQNDL+ IEWLE+APR PFYLL+P +TPLL+EYEQGFSVQ
Sbjct: 657 KPKICYYDVYGERAEKYAFLAQNDLDRIEWLELAPREPFYLLIPQKTPLLEEYEQGFSVQ 716
Query: 720 EMFQIGSTGICSQRDHVVFHKDKESL----LKLLKDFSTLEPSELRRIYNIKKDGRDWRL 775
EMFQI S GI + +D + + ESL LK +F+
Sbjct: 717 EMFQISSVGIVTGKDKIFIANNTESLKEQVLKYCNEFN---------------------- 754
Query: 776 EYAIKDVKANANNLEEYIVSCQYRPFDFYYTYYTGKSKSFIAYPRGEVFKHMLPPPP 832
E +KD+ YRPFD YY K + R FKHMLPPPP
Sbjct: 755 EQCVKDI--------------HYRPFDIRKVYYDTKK---LERARENTFKHMLPPPP 794
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 117 bits (292), Expect = 2e-27
Identities = 128/487 (26%), Positives = 224/487 (45%), Gaps = 92/487 (18%)
Query: 299 HFYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIK 358
+ Y TF K E G+ YTP VV FI+ A + +LK HF + ++++I
Sbjct: 407 NLYNTFFKEAFRKQSEKLGIVYTPIEVVDFILRATNGILKKHFN-------TDFNDQSIT 459
Query: 359 LLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLN 418
+ D GTG+F+ K E SD ++K+Q K + F+ ++ Y IA +N
Sbjct: 460 IFDPFMGTGSFIARLLSK--ENDFISD---EALKEKFQ---KGLFAFDIVLLSYYIALIN 511
Query: 419 LSQAFKEEFKKPLKENDALQIILTNTLIQPSEIIAYRGLSPIFE---KELSNAQEIK--- 472
++QA + LK + I LT++L E +G+ P FE ++L +EIK
Sbjct: 512 ITQAAQNR-DSSLK--NFKNIALTDSLDYLEEKND-KGVIPGFEYLFEDLKENKEIKTTM 567
Query: 473 KNENILIITGNPPYSGASENKGLFEWEVKATYGIDPKFQTIEIEKNVKLADKIQTLLSSV 532
+ +NI +I GNPPYS ++++ D Q L S
Sbjct: 568 EKQNIRVIIGNPPYSSGAKSEN----------------------------DNNQNL-SHP 598
Query: 533 QIQKQSGSKNDLKKLKSLHSKYKLQDEKNPKWLLDDYVKFMRFAQNKIESLGHGLFGFIS 592
+++K ++ + K KN D + +R A + ++ G+ GF+
Sbjct: 599 KLEK---------RVYETYGKNSTAQNKNST--RDTLIHSIRMASDLLKD--KGVLGFVV 645
Query: 593 NNAFLDNPTFRGLRRSLLECYDELYILNLHGNARK--KEKTPQGAKDENVFN--IKQGVS 648
N +F+D+ + G R+ + + + LY LNL GNAR +E+ QG + +F+ + V+
Sbjct: 646 NGSFIDSKSADGFRKCVAQDFSHLYALNLRGNARTSGEERKKQG---DGIFDSGSRVTVA 702
Query: 649 INLFVKNPQVVKQKIHYYDV--YGQRTEKYAFLAQ-NDLNSIEWLEIAP----------R 695
I FVK+ I YY+V Y +R K LA +L+S+ + EI P
Sbjct: 703 IIFFVKDKDAPNHTIFYYEVEDYLKREAKLNLLANFENLDSVPFKEITPNDKGDWINQRN 762
Query: 696 GPFYLLLPLETPLLDEYEQGFSVQEMFQIGSTGICSQRDHVVFHKDKESLLKLLKDFSTL 755
F L+PL+ D+ + F+ +F + S G+ + RD V++ +++L++ +++
Sbjct: 763 DDFEKLIPLKR---DKKSKIFNA--IFDLNSNGVKTSRDPWVYNFSQKTLMQSVQNCIDT 817
Query: 756 EPSELRR 762
++L+R
Sbjct: 818 YNADLKR 824
>ref|NP_222939.1| putative [Helicobacter pylori J99]
Length = 390
Score = 31.6 bits (70), Expect = 0.086
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 259 KKLDEIKEIQWLLNEILSSINHVDMDSIL-KDLNDDKDPYLHFYETFLSTYDPKLRESKG 317
K L+EI + W N+ +SS +M + K+ + D Y+ F+ T + ++ +
Sbjct: 12 KTLEEIG-LDWHTNDDMSSYIADEMVVVSQKEADAYYDACNELYDMFVETAEEAIKNDR- 69
Query: 318 VYYTPDSVVKFIINALDSLLKTHFKD-------APLGLKSALDNENIKLLDFATGTGTFL 370
++ D I NAL ++K F++ L LD + IKLL+F T T L
Sbjct: 70 -FFELD-----IPNALIPMIKQSFEEEVHWHIYGRFDLAGGLDGKPIKLLEFNADTPTML 123
Query: 371 LE 372
E
Sbjct: 124 YE 125
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 30.8 bits (68), Expect = 0.15
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 4/78 (5%)
Query: 27 NLLNQLKNHFNKEFKIEHEPERKQGSQPDFRVSYQGINIGYIENKRAGTNLSQLLKSEKS 86
+L+ +++NH E E EPE K D + Q I YIE+ A ++S+ +KS
Sbjct: 241 SLIREIENHCKNECNSEEEPEYKIN---DLLKNIQQICKNYIES-HAVNDVSKDIKSMMC 296
Query: 87 DQILKYLELNPNLMLTDY 104
LK ++L N + Y
Sbjct: 297 QFYLKQIDLLVNSEIVRY 314
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 30.4 bits (67), Expect = 0.19
Identities = 31/121 (25%), Positives = 49/121 (39%), Gaps = 36/121 (29%)
Query: 301 YETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDN-ENI-K 358
YE ++ Y +S G Y+TP V + + K L N ENI K
Sbjct: 194 YEYLMAMYASNAGKSGGEYFTPQEVSELL------------------AKITLHNQENINK 235
Query: 359 LLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLN 418
+ D G+G+ LL+ F K L + N+LK ++G E + Y + +N
Sbjct: 236 VYDPCCGSGSLLLQ-FSKVLGDK---------------NVLKGYFGQEINLTTYNLCRIN 279
Query: 419 L 419
+
Sbjct: 280 M 280
>ref|NP_223209.1| cag island protein [Helicobacter pylori J99]
Length = 268
Score = 29.6 bits (65), Expect = 0.33
Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 212 SDALAQTLTYSLFLAKLNHPSEKINLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQWLL 271
+D L ++S +L +L + I + + +N + + ++FL+ D + +
Sbjct: 16 NDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSNFLE--DHVN----VF 69
Query: 272 NEILSSINHVDMDSILKDLNDDKDPYLHFYETFLSTYDPKLRESKGV 318
E + +I+ V + + L D + LHF ++FLS D R K +
Sbjct: 70 YENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEI 116
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 28.9 bits (63), Expect = 0.56
Identities = 35/149 (23%), Positives = 60/149 (39%), Gaps = 33/149 (22%)
Query: 233 EKINLDNVRSLIPKNFAVIREMADFLKK-LDEIKEIQWLLNEILSSINHVDMDSILKDL- 290
EK+ +D+ K + DF + L + K ++ + S+ NH ++ ILK L
Sbjct: 32 EKLEIDH------KIYVKTSSFLDFCRNHLGKNKLNRYANKSLKSAHNHQEL--ILKYLE 83
Query: 291 ----NDDKDPYLHFYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPL 346
+ D + +YE LS R +G+YYTP+ +V+ +
Sbjct: 84 MLENSSDLENLGSYYEKELSN---TTRNLEGIYYTPNRIVEQLFT--------------- 125
Query: 347 GLKSALDNENIKLLDFATGTGTFLLEAFR 375
L D D A G+G F++ A +
Sbjct: 126 -LPKDFDTTQAIFCDPAVGSGNFVMHALK 153
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 28.1 bits (61), Expect = 0.95
Identities = 38/153 (24%), Positives = 68/153 (43%), Gaps = 17/153 (11%)
Query: 406 EYLIAPYAIAHLNLSQAFKEEFKKPLKENDALQIILTNTLIQPSEIIAYRGLSPIFEKEL 465
E++I P A L+Q+ + F KE+ L +I +L Q + P+ + L
Sbjct: 156 EFIINPSASL---LNQSSLDLFVSGTKES--LNMIEMRSLGQKLNALE----EPLMLEAL 206
Query: 466 SNAQEIKKNENILIITGNPPYSGASENKGLFEWEVKATYGIDPKFQTIEIEKNVKLADKI 525
AQ+ K L PY +N+ LF K GI + +++ KN + I
Sbjct: 207 ELAQKSLKETCALYEEAFTPY----QNELLF----KEGEGIVLNERLLDLLKNQYFDEII 258
Query: 526 QTLLSSVQIQKQSGSKNDLKKLKSLHSKYKLQD 558
+ + SS ++++ K KK+ HS++ L++
Sbjct: 259 KGIESSALSERENVFKEVAKKISEAHSEFSLEE 291
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 28.1 bits (61), Expect = 0.95
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 10/62 (16%)
Query: 524 KIQTLLSSVQI--QKQSGSKNDLKKLKSLHSKYKLQDEKNPKWLLDDYVKFMRFAQNKIE 581
++Q L ++ I Q+ S K +LK LK +S+YK + +K Y ++ + KIE
Sbjct: 56 QLQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDK--------YKNRIKQLEQKIE 107
Query: 582 SL 583
+L
Sbjct: 108 AL 109
>ref|NP_223973.1| putative [Helicobacter pylori J99]
Length = 253
Score = 27.7 bits (60), Expect = 1.2
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 203 YEELSF---EDFSDALAQTLTYSLFLAKLNHPSEKINLDNVRSLIPKNFAVIREMADFLK 259
Y+ L F E+FS+ + L LAK HP + +L ++L K FA+I+E +K
Sbjct: 196 YKALGFIKHENFSEVKKRYLE----LAKTYHP-DLCDLKEKKALYAKRFAIIQEAYSHIK 250
Query: 260 K 260
K
Sbjct: 251 K 251
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 27.7 bits (60), Expect = 1.2
Identities = 23/102 (22%), Positives = 46/102 (44%), Gaps = 3/102 (2%)
Query: 166 DFATHLSPRTKYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLTYSLFL 225
D + L+ + + AL + ++V + N YLY + E +D + +S FL
Sbjct: 673 DDISELNELSFQIAQALKGIKGSSEVLTTLNEGVNYLYVTPNKESMADVGITSNEFSKFL 732
Query: 226 AKLNHPSEKINLDNVRSLIPKNFAVIREMADFLKKLDEIKEI 267
E + +D + + I + +IR+ +DF + +IK +
Sbjct: 733 KSA---LEGLVVDVIPTGISRTPVMIRQESDFASSITKIKSL 771
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 27.7 bits (60), Expect = 1.2
Identities = 19/51 (37%), Positives = 24/51 (46%), Gaps = 1/51 (1%)
Query: 742 KESLLKLLKDFSTLEPSELRRIYNIKKDGRDWRLEYAIKDVKANANNLEEY 792
K+S LKL K+ LEP + I D DW L+ + A LEEY
Sbjct: 507 KQSSLKLNKNLKDLEPFGEKEIEKRASDLVDWALKIWTYPI-LEAETLEEY 556
>ref|NP_224173.1| putative [Helicobacter pylori J99]
Length = 308
Score = 27.3 bits (59), Expect = 1.6
Identities = 49/185 (26%), Positives = 74/185 (39%), Gaps = 44/185 (23%)
Query: 114 ENNEPLIKKEISVASLDELSKPLKPNPQTERD-LIELFKSFFNH---EAAPITNAKDFA- 168
E N P IKK V S + PL D +++ K+ N I +A F+
Sbjct: 153 ERNHP-IKKIKGVESGIDFIAPLNTPVYASADGIVDFVKTRSNAGYGNLVRIEHAFGFSS 211
Query: 169 --THLS-----PRTKYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLTY 221
THL P++ K LI Y K+ N+ E L+ E+ F L + L
Sbjct: 212 IYTHLDHVNVQPKSFIQKGQLIGYSGKSG-----NSGGEKLHYEVRF------LGKILDA 260
Query: 222 SLFLAKLNHPSEKINLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHV 281
FLA +LD+ +S + +N K E K + W+L +I+ HV
Sbjct: 261 EKFLAW--------DLDHFQSALEEN------------KFIEWKNLFWVLEDIVQLQEHV 300
Query: 282 DMDSI 286
D D++
Sbjct: 301 DKDTL 305
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 27.3 bits (59), Expect = 1.6
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 20/110 (18%)
Query: 510 FQTIEIEKNVKLADKIQTLLSSVQ---IQKQS----GSKNDLKKLKSLHSKYKLQDEKNP 562
++T+ +E+ + DKI L VQ +Q S NDLK L+ K L+ + P
Sbjct: 200 YETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRQEKIKV-LKTLQPP 258
Query: 563 KWLLDDYVKFMRFAQ-------NKIESLGHGLFGFISNNAFLDNPTFRGL 605
K D+ K + AQ NK+ F++ AFLD P F+G+
Sbjct: 259 K----DFTKQVIRAQYQGYRDENKVHKESQ-TETFVAIKAFLDTPKFKGV 303
>ref|NP_224042.1| putative [Helicobacter pylori J99]
Length = 329
Score = 26.9 bits (58), Expect = 2.1
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 171 LSPRTKYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLTYSLFLAKLNH 230
++P T + KDALI+ EK S+I N L LS D AL + L
Sbjct: 218 IAPSTSF-KDALIEMSEKRLGSAILVNDNNELVGVLSDGDVRRALLKGL----------- 265
Query: 231 PSEKINLDNVRSLIPKNF----AVIREMADFLKK 260
S + + + +L PK+F A++ E +FL++
Sbjct: 266 -SLESEVKHFATLKPKSFKNLDALLLEALEFLER 298
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 26.9 bits (58), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 735 HVVFHKDKESLLKLLK-----DFSTLEPSELRRIYNIKKDGRDWRLEYAIK 780
H + ++ + LLKLLK D S L P++L R+ + K+ E A+K
Sbjct: 310 HYLKNQSVQELLKLLKPFSFSDLSHLNPAQLDRLLDALKERSQTLKELALK 360
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 26.6 bits (57), Expect = 2.8
Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 34/225 (15%)
Query: 166 DFATHLSPRTKYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFE------DFSDALAQ-T 218
DF T +++KD L ++ NNF + L D+ A A+
Sbjct: 114 DFKTQSQECKEFIKDHLNSSHLHNKIQIDKNNFFTIYQKWLEIVKPTIKIDWELAKAEGI 173
Query: 219 LTYSLFLAKLNHPSEKINLDNVRSLIPKNFAVIREMADFLKKL--DEIKEIQWLLNEILS 276
L +LA L +K ++ +R+++ + ++ ++ L KL + I ++ + N+
Sbjct: 174 LDADYYLADLLSDGDKTIIEKLRTILKSSHYELKWGSNTLNKLGLEGITKVGFTDNQQA- 232
Query: 277 SINHVDMDSILKDLNDDKDPYLHFYETFLSTYD----PKLRESKGVYYTPDSVVKFIINA 332
H + S+ ++ P F + L D +RE KG Y+TP V+ +
Sbjct: 233 ---HQEFWSVY-----ERPPKSEFQASILERRDLLVPSDVRERKGAYFTPKIWVE---KS 281
Query: 333 LDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKA 377
+ L K +D E+ + D A GTG L KA
Sbjct: 282 QEYLAKALGQDY---------QEDYIIWDCAGGTGNLLRGLLNKA 317
>ref|NP_224043.1| putative [Helicobacter pylori J99]
Length = 357
Score = 26.6 bits (57), Expect = 2.8
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 120 IKKEISVASLDELSKPLKPNPQTERDLIELFKSFFNHEAAPITN-AKDFATHLSPRTKYL 178
+K I +LDELS+ LKP+ + ++ + L+ + N +KDF +L
Sbjct: 1 MKASIYDFTLDELSQLLKPSFRAKQLYLWLYAKYKTSFKDMQNNFSKDFIAYLE------ 54
Query: 179 KDALIKYQEKAQVSSIFNNFKEYLYEEL 206
++ ++ E A V + K+YL++ L
Sbjct: 55 QEFTLRTIEIAHVRESVDGSKKYLFKSL 82
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.6 bits (57), Expect = 2.8
Identities = 26/91 (28%), Positives = 46/91 (49%), Gaps = 19/91 (20%)
Query: 220 TYSLF---LAKLNHPSEKINLDNVRSLI---PKNFAVIREMAD------------FLKKL 261
TYS F L LN ++ + +N+++L+ +N A ++EM + L+ L
Sbjct: 1207 TYSPFNQPLNSLNIYNKGFSSENLKTLLGILSQNSATLKEMIESNQLDNITNINEVLQLL 1266
Query: 262 DEIKEIQWLLNEILSSINHVDMDSILKDLND 292
D+IK Q +L +INH+ D+I + N+
Sbjct: 1267 DKIKITQAQKQALLETINHL-TDNINQTFNN 1296
>ref|NP_223564.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 381
Score = 26.6 bits (57), Expect = 2.8
Identities = 19/71 (26%), Positives = 30/71 (41%), Gaps = 13/71 (18%)
Query: 209 EDFSDALAQTLTYSLFLAKLNHPSEKINL------DNVRSLIPKNFAVIREMADFLKKLD 262
+D + + + L YSLF E+ NL ++ L PK + DFLK
Sbjct: 94 KDIAPSTKEKLHYSLF-------DERSNLYLFFIEKAIKHLKPKGELIFITPRDFLKSTS 146
Query: 263 EIKEIQWLLNE 273
+K +W+ E
Sbjct: 147 SVKLNEWIYKE 157
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 26.2 bits (56), Expect = 3.6
Identities = 33/171 (19%), Positives = 64/171 (37%), Gaps = 26/171 (15%)
Query: 232 SEKINLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQWLLNEILSSINHVDMDSILKDLN 291
S L N +S A+ ++ ++ +E + +L + + + +L
Sbjct: 123 SNNAELFNTKSTDETTIALFESVSQYI---NEGSKRANFTRSLLDKLKNFNFKQAFLNLQ 179
Query: 292 DDK--DPYLHFYETFLSTYDPKLRESKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLK 349
+ + D + +E L Y+ + YYTP S+ I L +
Sbjct: 180 NQQGYDFFAPIFEYLLKDYNNNSGGTYAEYYTPLSIASIIAKLLVNK------------- 226
Query: 350 SALDNENIKLLDFATGTGTFLLEAFRKALETRKTSDGGTSTKEDKYQNLLK 400
+++K+ D + GTGT L+ AL + +D T +D Q L+
Sbjct: 227 ---PTQSVKIYDPSAGTGTLLM-----ALAHQIGTDSCTLYAQDISQKSLR 269
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 25.8 bits (55), Expect = 4.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 454 YRGLSPIFEKELSNAQEIKKNENILIITGNPPYSGAS-ENKGLFEWEVKATYGIDPKFQT 512
+R S + + L + I KN L ++ P K + E ++ T +DPKF+
Sbjct: 368 FRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGLLDPKFEV 427
Query: 513 IEIEKNVK-LADKIQTLLS 530
+ +K V+ L D+I+++++
Sbjct: 428 RDSDKQVQDLFDEIKSVVA 446
>ref|NP_223593.1| putative AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR
[Helicobacter pylori J99]
Length = 257
Score = 25.8 bits (55), Expect = 4.7
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 15 EKNELTHRPSLYNLLNQLKNHFNKEFKIEHEPERKQG 51
++ +LT SL +LN L H N FKI E + K G
Sbjct: 177 KRADLTLNSSLA-ILNYLNTHKNSPFKIAWESKEKDG 212
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 25.8 bits (55), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 7 ESIKDLTPEKNELTHRPSLYNLLNQLKNHFNKEFKI 42
E+ K+L E H ++ LLNQL F ++F++
Sbjct: 222 EASKELPLESRVFYHLQAIEGLLNQLNIPFKRDFEL 257
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.4 bits (54), Expect = 6.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 516 EKNVKLADKIQTLLSSVQIQKQSGSKNDLKKLKS-----LHSKYKLQDEK 560
EKN +LADKI + K K + +KL+ ++ Y L DE+
Sbjct: 1195 EKNQELADKITDCAEQILALKAKDPKANTQKLEKEIDALVYQLYHLTDEE 1244
>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
Length = 336
Score = 25.4 bits (54), Expect = 6.2
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 139 NPQTERDLIELFKSFFNHEAAPITNAKDFATHLS 172
N T +DL E+ K++ NH A KD L+
Sbjct: 292 NETTLKDLFEVLKAYKNHRAYNAIELKDEVARLA 325
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.4 bits (54), Expect = 6.2
Identities = 17/59 (28%), Positives = 26/59 (43%), Gaps = 12/59 (20%)
Query: 315 SKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEA 373
++ YYTP V+ I LD LG + DN ++ + + GTG F+ A
Sbjct: 521 ARDAYYTPKLVIDSIYQGLDQ----------LGFNN--DNHPKEIFEPSLGTGKFIAHA 567
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 25.4 bits (54), Expect = 6.2
Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 7/63 (11%)
Query: 497 EWEVKATYGIDPKFQTIEIEKNVKLADKIQTLLSSVQ--IQKQSGSKNDLKKLKSLHSKY 554
+WE Y +P ++ ++ DKI L + + G K DLKKL S+ +
Sbjct: 152 KWEFDIIYHFNPNMYGVK-----EIKDKIDKQLHNNDHLFEGLFGEKEDLKKLVSMFGQL 206
Query: 555 KLQ 557
+ Q
Sbjct: 207 RFQ 209
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 25.4 bits (54), Expect = 6.2
Identities = 38/176 (21%), Positives = 64/176 (35%), Gaps = 14/176 (7%)
Query: 313 RESKGVYYTPDSVVK--FIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFL 370
+E ++ P ++ K + IN L + L ++ + L+N I +A
Sbjct: 287 KERHQLFLEPQTIHKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQ 346
Query: 371 LEAFRKALETRKTSDGGTSTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLSQAFKEEFKKP 430
ALET+K K + G+E A +A +N A K +
Sbjct: 347 PTELTHALETKKI-------KGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFI 399
Query: 431 LKENDALQIILTNTLIQPSEIIAYRGLSPIFEKELSNAQEIKKNENILIITGNPPY 486
LK N+A +L + L+ YR + E L + + +N L G Y
Sbjct: 400 LKRNEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRL-----LLREDNTLFRLGEHAY 450
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.0 bits (53), Expect = 8.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 421 QAFKEEFKKPLKENDALQIILTNTLIQPSEIIAYRGLSPIFEKELSNAQ----EIKKNEN 476
+AF+ F + +ND L + N E + ++GL I EK+ + Q E KKN+
Sbjct: 131 EAFR--FNDRVAKNDILGALPPNIYEHQEEDLDFKGLLDILEKDFLSYQHKELEHKKNQI 188
Query: 477 I 477
I
Sbjct: 189 I 189
>ref|NP_224077.1| putative [Helicobacter pylori J99]
Length = 377
Score = 25.0 bits (53), Expect = 8.0
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 518 NVKLADKIQTLLSSVQIQKQSGSKNDLKKLKSLHSKYKLQDEKNPKWLLDDYVKFMRFAQ 577
N++L + + ++++ K K D + K KY+L K K L++ Y F+
Sbjct: 77 NIELCNVSENNACALKVVKDWLEKEDDLESKKAGKKYELMITKLGKSLVETYNTFL---- 132
Query: 578 NKIESLGHGLFGFISN 593
N G LF FI +
Sbjct: 133 NAFNFCGMILFYFIKS 148
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 25.0 bits (53), Expect = 8.0
Identities = 25/87 (28%), Positives = 34/87 (38%), Gaps = 3/87 (3%)
Query: 259 KKLDEIKEIQWLLNEILSSINHVDMDSILKDLNDDKDPYLHFYETFLSTY---DPKLRES 315
K ++KE L++E + H D L + HF + Y D + E
Sbjct: 659 KNFKDLKEHFHLMSEKHFILKHEIYDPKDYALLKEMIQTAHFKKVSTWHYKDLDYMISEI 718
Query: 316 KGVYYTPDSVVKFIINALDSLLKTHFK 342
KG Y V K NALD+ HFK
Sbjct: 719 KGKLYPNQKVPKDEFNALDNEKIVHFK 745
>ref|NP_223954.1| 50S RIBOSOMAL PROTEIN L2 [Helicobacter pylori J99]
Length = 276
Score = 25.0 bits (53), Expect = 8.0
Identities = 15/54 (27%), Positives = 25/54 (45%), Gaps = 8/54 (14%)
Query: 777 YAIKDVKANANNLEEYIVSCQYRPFDFYYTYYTGKSKSFIAYPRGEVFKHMLPP 830
Y I D K N N+E + + +Y P Y + + YP G+ +++L P
Sbjct: 62 YRIIDFKRNKYNIEGKVAAIEYDP-------YRNARIALVVYPDGDK-RYILQP 107
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 25.0 bits (53), Expect = 8.0
Identities = 46/222 (20%), Positives = 90/222 (39%), Gaps = 38/222 (17%)
Query: 64 NIGYIENKRAGTNLSQLLKSEKSDQILKYLELNPNLMLTDYLNFMWVGKDENNEPLIKKE 123
NIG ++ L+ L++ ++ +LE + +L +LN + KD N +
Sbjct: 74 NIGQMKRSHLENALNYALENSETAYNEMFLECDKQFILESWLNDFDLTKDYNETMHL--- 130
Query: 124 ISVASLDELSKPLKPNPQTERDLI-----ELFKSFFNHEAAPITNAKDFATHLS---PRT 175
V S+ + KP+ +T + L+ L ++ A + +A H+ +T
Sbjct: 131 --VFSIKD-----KPDEETMQGLLHSTWESLKIRLPEYKFALVPHAHQDHAHIHCFINKT 183
Query: 176 KYLKDALIKYQEKAQVSSIFNNFKEYLYEELSFEDFSDALAQTLTYSLFLAKLNHPSEKI 235
L ++++ + FN L E ++ L++ Y +N P K
Sbjct: 184 NQLTRRRLRFKGREDCKEFFNE----LRSEFAYRLNEHLLSEEYLY------VNEPKLK- 232
Query: 236 NLDNVRSLIPKNFAVIREMADFLKKLDEIKEIQ--WLLNEIL 275
LDN++ ++++ K L++IK Q W LN+ L
Sbjct: 233 ELDNIK-------LQLQDLEKEEKALEQIKSPQDEWDLNKAL 267
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 25.0 bits (53), Expect = 8.0
Identities = 13/38 (34%), Positives = 19/38 (49%)
Query: 618 ILNLHGNARKKEKTPQGAKDENVFNIKQGVSINLFVKN 655
I LHGN + PQ + V + K +S+NL K+
Sbjct: 166 IEKLHGNTLSPLQIPQDLTYQPVLSTKVNISVNLNPKD 203
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 25.0 bits (53), Expect = 8.0
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 523 DKIQTLLSSVQIQKQSG------SKNDLKKLKSLHSKYKLQDEKN 561
D IQ LS +Q + Q G ND +K SL YK +EKN
Sbjct: 15 DVIQQHLSVLQEKSQVGFGKIRSKLNDQEKHDSLEEIYKATNEKN 59
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 25.0 bits (53), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 568 DYVKFMRFAQNKIESLGHGLFG 589
DY K +AQN I+ G GL G
Sbjct: 108 DYKKAQFYAQNAIKGYGSGLLG 129
>ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE [Helicobacter pylori
J99]
Length = 328
Score = 25.0 bits (53), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (49%), Gaps = 7/40 (17%)
Query: 274 ILSSINHVDMDSILKDLNDDKDPYLHFYETFLSTYDPKLR 313
ILS ++D+ + D NDD Y + +TY P +R
Sbjct: 246 ILSRRYNIDIQPVFIDFNDD-------YSHYTATYYPSIR 278
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 25.0 bits (53), Expect = 8.0
Identities = 26/102 (25%), Positives = 44/102 (42%), Gaps = 19/102 (18%)
Query: 498 WEVKATYGIDPKFQTIEIEKNVKLAD---KIQTLLSSVQIQKQSGSKNDLKKLKSLHSKY 554
WE K DP++ + EKN +L D K + S+ + GS LK L K+
Sbjct: 253 WEFK-----DPQYPSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKF 307
Query: 555 KLQDEKNPKWLLDDYVKFMRFAQNKIESLGHGLFGFISNNAF 596
+D+ ++ +NK+E++ L F+S N +
Sbjct: 308 ---------IGIDNSDLAIQACKNKLETITKDL--FVSQNFY 338
>ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 227
Score = 25.0 bits (53), Expect = 8.0
Identities = 10/36 (27%), Positives = 20/36 (54%)
Query: 462 EKELSNAQEIKKNENILIITGNPPYSGASENKGLFE 497
++ ++NA+E K+N + I+ G P Y + + E
Sbjct: 187 QERVANAKEAKQNLSDFIVVGRPIYQAKEPREVVLE 222
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.136 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 986,645
Number of Sequences: 1491
Number of extensions: 51585
Number of successful extensions: 251
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 52
length of query: 835
length of database: 494,079
effective HSP length: 86
effective length of query: 749
effective length of database: 365,853
effective search space: 274023897
effective search space used: 274023897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)