BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645970|ref|NP_208150.1| hypothetical protein
[Helicobacter pylori 26695]
(168 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223994.1| putative [Helicobacter pylori J99] 326 2e-91
ref|NP_222796.1| putative [Helicobacter pylori J99] 29 0.076
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_222774.1| putative [Helicobacter pylori J99] 28 0.17
ref|NP_223614.1| putative [Helicobacter pylori J99] 27 0.22
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.29
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 27 0.29
ref|NP_223761.1| putative [Helicobacter pylori J99] 27 0.38
ref|NP_223180.1| putative [Helicobacter pylori J99] 27 0.38
ref|NP_223809.1| putative [Helicobacter pylori J99] 26 0.50
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 26 0.65
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 26 0.65
ref|NP_223219.1| putative [Helicobacter pylori J99] 26 0.65
ref|NP_223642.1| putative [Helicobacter pylori J99] 25 0.85
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 25 1.1
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 25 1.1
ref|NP_223773.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_222962.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter p... 25 1.4
ref|NP_223364.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_224003.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 24 2.5
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 24 2.5
ref|NP_223084.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 23 3.2
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 23 3.2
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 23 3.2
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 3.2
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 23 4.2
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 4.2
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223438.1| putative [Helicobacter pylori J99] 23 4.2
ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 23 4.2
ref|NP_223961.1| RIBONUCLEASE HII [Helicobacter pylori J99] 23 5.5
ref|NP_222779.1| putative [Helicobacter pylori J99] 23 5.5
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 7.2
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 22 7.2
ref|NP_223238.1| putative [Helicobacter pylori J99] 22 7.2
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 9.3
ref|NP_224104.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_224090.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99] 22 9.3
ref|NP_223659.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_223277.1| putative chemotaxis protein [Helicobacter ... 22 9.3
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 22 9.3
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 22 9.3
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 326 bits (835), Expect = 2e-91
Identities = 164/168 (97%), Positives = 168/168 (99%)
Query: 1 MLSSSDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKE 60
MLSS+DLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENY+YSKRL+E
Sbjct: 1 MLSSNDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRLRE 60
Query: 61 LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG
Sbjct: 61 LEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
Query: 121 HYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW 168
HYAASDE+NEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW
Sbjct: 121 HYAASDEVNEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLKW 168
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 28.9 bits (63), Expect = 0.076
Identities = 23/112 (20%), Positives = 45/112 (39%), Gaps = 17/112 (15%)
Query: 28 LKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHL 87
LK+ +H K++D + +K L L G++ K K+D + + +
Sbjct: 299 LKDNSLFHTKAMPTKSVDAITSQ----AKELNHLVGQI------KEMKQDGASPNKIDSV 348
Query: 88 YNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQE 139
N+ E+ RD L+ + L+N KD ++ + + L Q+
Sbjct: 349 VNKAMEV-------RDKLDNNLNQLDNDLKDQKGLSSEQQAQVDKALDSVQQ 393
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 28.1 bits (61), Expect = 0.13
Identities = 28/135 (20%), Positives = 61/135 (44%), Gaps = 10/135 (7%)
Query: 38 RRLEKTLDESYQENYIYSKRLKE-----LEGRLEGL-SLEKSAKEDSSLKTTLSHLYNQL 91
++LE D SYQE+ K++KE + LE L + K+ + +S K +L +
Sbjct: 297 KQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLDTENLKRII 356
Query: 92 QEIQKSMDKERDYLEEKIITLENKFK---DMGHYAASDEINEKQVLKMYQEGYSVDSISK 148
+ ++ + + + +K + FK + A ++ +K ++ ++ I K
Sbjct: 357 ETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHNETIKDIEK 416
Query: 149 EFKVSKGEV-EFILN 162
+ K K + +F++N
Sbjct: 417 QKKSCKEQTWKFLIN 431
Score = 25.0 bits (53), Expect = 1.1
Identities = 32/136 (23%), Positives = 59/136 (42%), Gaps = 17/136 (12%)
Query: 29 KEKEFYHKMRRLEKTLDESYQEN------YIYSKRLKELEGRLEGLSLEKSAKED---SS 79
++++FY R + + E+ E ++Y L + + +S K D SS
Sbjct: 507 EDEKFYRIQREDGQLVGETLSEGEVTFITFLYYYHLAKGSLKENDISKNKVLVIDDPISS 566
Query: 80 LKTTLSHLYNQL-QEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQ 138
L + + + + L +++ K +E+ +++ II N + EI + LK YQ
Sbjct: 567 LDSNILFMVSVLVKDLMKETMEEKTNIKQIIILTHNTY-------FYKEITLEYDLKRYQ 619
Query: 139 EGYSVDSISKEFKVSK 154
YS I K+ VSK
Sbjct: 620 GKYSFWIIKKDNNVSK 635
Score = 24.3 bits (51), Expect = 1.9
Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 65 LEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQK----------SMDKERDYLEEKIITLEN 114
++ + +K + ++ + K ++ + +QE K +++KE +EK+ LEN
Sbjct: 411 IKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLEN 470
Query: 115 KFKDM 119
+ K++
Sbjct: 471 EIKEL 475
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 27.7 bits (60), Expect = 0.17
Identities = 25/109 (22%), Positives = 45/109 (40%), Gaps = 19/109 (17%)
Query: 26 LYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKS------------ 73
L+ + + K+ LE + D+ +Q N +K EL+ + L+ E +
Sbjct: 74 LFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEE 133
Query: 74 ----AKEDSSLK---TTLSHLYNQLQEIQKSMDKERDYLEEKIITLENK 115
E LK T L+H +L + K++ E D L ++ L N+
Sbjct: 134 KRELTTEKERLKRENTELTHKITELTKENKALTTENDKLNHQVTALTNE 182
Score = 21.9 bits (45), Expect = 9.3
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 57 RLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLE 113
RLK LEG L+ + +S L +L+E ++ + D L E++ L+
Sbjct: 266 RLKSLEGMEAKSDLDLHNRRLASANEDLKRQNRKLEEENIALKERVDGLNEQLSKLQ 322
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 27.3 bits (59), Expect = 0.22
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 41 EKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKE--DSSLKTTLS--HLYNQLQEIQ- 95
++ + E Y++ Y +L +L LE L + KE D++ + +L+ L N L+E +
Sbjct: 71 QEKIQEEYRDCIDYDNKLLQLHYSLENLQTLRELKEEADNNYQESLNDEKLQNNLREWRD 130
Query: 96 -KSMDKERDYLE-EKIITLENKFKD 118
K+ +E +Y E E+I + F+D
Sbjct: 131 LKNTPEEENYREFEEIKKMVLYFRD 155
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 26.9 bits (58), Expect = 0.29
Identities = 15/59 (25%), Positives = 32/59 (53%), Gaps = 3/59 (5%)
Query: 97 SMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKG 155
S +K +++ + KDMG + + D +NE +L+++++ S+D + +E S G
Sbjct: 5 SKNKPYSFIKNLEFYTIKRIKDMGSHPSQDHLNE--LLELFKQDLSID-LKREIASSIG 60
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 26.9 bits (58), Expect = 0.29
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 50 ENYIYSKRLKELEGRLEGLSL----EKSAKEDSSLKTTLSHLYNQLQEIQKSMD--KERD 103
+NY YS+ LK L+ + + ++L EK +E ++ N Q++ K+ D KE+
Sbjct: 2 DNYTYSELLKSLQNKCDNIALIIKPEKIKQELERIEKEQED-PNFWQDVLKARDTNKEKV 60
Query: 104 YLEEKIITLENKFKDMGHYA-----ASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVE 158
L + T + + A ++ +E + +Y+E ++ E V K E+E
Sbjct: 61 RLNRLLETYQKMKNSLDESVELFELAQNDSDEVTLSLLYEEAPTL-----EHSVQKVEIE 115
Query: 159 FILN 162
+L+
Sbjct: 116 IMLS 119
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 26.6 bits (57), Expect = 0.38
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 24/112 (21%)
Query: 39 RLEKTLDESYQENYIYSKRLKEL---------------EGRLEGLSLEKSA--------- 74
R++ L+ + + YIY+K +KE RL+ + A
Sbjct: 460 RIQGMLNFTPKSRYIYNKAIKEYYHIDLEPDELLVRVPNKRLDNTEINNLAASSNQGRFN 519
Query: 75 KEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASD 126
E LSH +L+E++K +D + Y + I+ F H D
Sbjct: 520 SESDHAIAVLSHYEAKLKELEKKLDADSIYSLKNIVANNLNFDKATHPNVGD 571
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 26.6 bits (57), Expect = 0.38
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 31 KEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQ 90
+E + +R+ KTLDE EN+ K + + ++ ++ LK L +N+
Sbjct: 595 RELFDILRKEIKTLDERVTENF----NSKYIAYKFFKINFVDIVVQNKVLKLYLKMEFNE 650
Query: 91 LQEIQKSMDKERD 103
LQ+ K K RD
Sbjct: 651 LQDEIKEKLKIRD 663
Score = 21.9 bits (45), Expect = 9.3
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 69 SLEKSAKEDSSLKTTLSHLY-----NQLQEIQKSMDKERDYLEEKIITLENKFKDMGHY 122
++E+ K++ +L Y ++ I+K +DY +++ I +E+ KD+ Y
Sbjct: 236 AMEEDFKQNETLFNRFVRHYLTIKTGKIPNIKKVYGAFKDYQQKEGIEIEDLLKDLQKY 294
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 26.2 bits (56), Expect = 0.50
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 9 MVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELE 62
+ V+G L++L L +Y KEKE K ++ K L E + + LKEL+
Sbjct: 161 LYVVGIFLIMLCALTIIIYFKEKEGDFKSQKNLKLLKEQVKGS------LKELK 208
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 25.8 bits (55), Expect = 0.65
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 5 SDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRL----------EKTLDESYQENYIY 54
S L ++LGA + + G ++++E EK L + Y
Sbjct: 87 SSLIFIILGAAITRFFGVEGLMHVRENSAQSSFESADTYLNITLNDEKKLSLKTPLTFYY 146
Query: 55 SKRLKELEGRLEGLSL---------EKSAKEDSSLKTTLSHLYN 89
SKRLK + L+ L + + K+D + L YN
Sbjct: 147 SKRLKPIHATLDHKPLLLEPLEIYKQNAIKKDDATILVLKATYN 190
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 25.8 bits (55), Expect = 0.65
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 58 LKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQ-------KSMDKERDYLEEK-- 108
LKELE LEG + K+ +S L ++ N + + + K DY +
Sbjct: 395 LKELESLLEGAKIAILDKDHTSTPKKLHNILNDFNAQKTNILIGTQMISKGHDYAKVSLA 454
Query: 109 -IITLENKFKDMGHYAASDEINEKQVLKMYQ-EGYSVDSISKEFKVSKGEVEFILN 162
++ ++N K + A E+ V +YQ G S IS + + E + + N
Sbjct: 455 VVLGIDNIIKSNSYRAL-----EEGVSLLYQIAGRSARQISGQVFIQSTETDLLEN 505
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 25.8 bits (55), Expect = 0.65
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 8 FMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLE-KTLDESYQENYIYSKRLKELEGRLE 66
F++VLG ++++LV ++ KE + R ++ T + S+ E ++ E +LE
Sbjct: 153 FVIVLGVVVIILVVVIIQNSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLE 212
Query: 67 GLSLEKSAKEDSSLKTTLSHLYNQLQEIQK-SMDKERDYLEEKIITLENKFK 117
EK ++D K + N + I K + E L+EK + + FK
Sbjct: 213 ----EKHKEQDKQGKEAIKENPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFK 260
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 25.4 bits (54), Expect = 0.85
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 27 YLKEKEFYHKMRRLEKTLDESYQENYI---YSKRLKELEG----------RLEGLSLEKS 73
+ ++ EFY R + +LD + + ++ L+ LE R G +
Sbjct: 70 FKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSSLENLEKQKINPIREQKRESGWQNNED 129
Query: 74 AKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKD 118
KE+S L+ + Q +DK+ EEK LE+K K+
Sbjct: 130 NKENSELEKAFKKDLSFSQSNPIPLDKKETSKEEKEEELESKEKE 174
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 25.0 bits (53), Expect = 1.1
Identities = 36/158 (22%), Positives = 68/158 (42%), Gaps = 23/158 (14%)
Query: 26 LYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKEL-----------EGRLEGLSLEK-S 73
L L + EF K LEK DE Y + LK+ E + E + + K +
Sbjct: 605 LTLNQNEFLKKEPELEKLKDEKYLDFEKLKDFLKDRLIGHFRVRNKNERKTEKIKINKEN 664
Query: 74 AKEDSSLKTTLSH---------LYNQLQEIQKSMDKERDYLEEKI-ITLENKFKDMGHYA 123
K+ +L L+H + + EI K+++ + + + +T K + MG+ A
Sbjct: 665 FKKFETLWAGLNHQARIAYAIDSESLIDEIVKNINSSFNVSSKIVSVTTHKKVETMGNNA 724
Query: 124 ASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFIL 161
+ EI E++ ++ + ++S + K+S V +L
Sbjct: 725 KT-EIFERKSACVWSLHEFISALSNKVKLSFKSVAKVL 761
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 25.0 bits (53), Expect = 1.1
Identities = 19/81 (23%), Positives = 36/81 (43%), Gaps = 3/81 (3%)
Query: 55 SKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLEN 114
S+R++E + E + L+ +H N + KS E+++ + L+N
Sbjct: 243 SERIEESKKNQERFNAFLENLSFLDLENFFNHSRNAFFKAAKSFFDEQNHTPNLVALLQN 302
Query: 115 KFKDMGHYAASDEINEKQVLK 135
KFK+ + NEK++ K
Sbjct: 303 KFKESVQINTN---NEKELEK 320
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 25.0 bits (53), Expect = 1.1
Identities = 31/149 (20%), Positives = 59/149 (38%), Gaps = 26/149 (17%)
Query: 2 LSSSDLFMVVLGAILLVLVCLVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKEL 61
+S S +F V+ G + +L L+ Y L E+ H + LD + ++ L++L
Sbjct: 1 MSKSAIF-VLSGFLAFLLYALLLYGLLLER---HNKEAEKILLDLNKKDEQAIDLNLEDL 56
Query: 62 EGRLEGLSLEKSAKEDSSL-----------KTTLSHLYNQLQEIQKSMDKERDYLEEKII 110
+ +EK ++ + +L +++ L + Q+ DK E+K
Sbjct: 57 PSEKKNEKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNE 116
Query: 111 TLENKFKDMGHYAASDEINEKQVLKMYQE 139
E + + E+Q LK QE
Sbjct: 117 QEEQR-----------RLREQQRLKQNQE 134
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 25.0 bits (53), Expect = 1.1
Identities = 18/59 (30%), Positives = 25/59 (41%)
Query: 29 KEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHL 87
KEKE K++ L + KRLK L EG+ E +DS + T S +
Sbjct: 72 KEKEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKM 130
>ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter pylori J99]
Length = 276
Score = 24.6 bits (52), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 22 LVGYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKE 60
L+G++ KE+ F H LE + +E + + KRL +
Sbjct: 28 LLGFVLQKERVFLHTHEHLELSHEEETRFFELVGKRLND 66
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 24.6 bits (52), Expect = 1.4
Identities = 23/123 (18%), Positives = 53/123 (42%), Gaps = 17/123 (13%)
Query: 54 YSKRLKE--------LEGRLEGLSLEKSAKEDSSLKTTL-SHLYNQLQEIQKSMDKERDY 104
++KR KE ++G L L + +D + SH + +++ ++ ++
Sbjct: 82 FAKRFKEALEIHGERIKGVLVDLGVSSLQLDDDNRGFNFRSHALDMRMDLESELNAQKVI 141
Query: 105 LEEKIITLENKFKDMG----HYAASDEINEKQVLKMYQEGYS----VDSISKEFKVSKGE 156
++ LE F+D G + + +I E++ K +++ + S+SK K+
Sbjct: 142 NSYPVVALEKIFRDYGEIKEYKKIAHKIAERRAKKPFKDAKDLSEFLSSLSKNKKIHPAT 201
Query: 157 VEF 159
+ F
Sbjct: 202 LVF 204
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 24.3 bits (51), Expect = 1.9
Identities = 13/47 (27%), Positives = 24/47 (50%)
Query: 96 KSMDKERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYS 142
KS D ++ L+ + L N F+ + Y + ++K+ YQ+ YS
Sbjct: 39 KSFDDNKELLDYQQQALINAFRVLVAYFRDFKESKKEFYAFYQKHYS 85
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 23.9 bits (50), Expect = 2.5
Identities = 17/48 (35%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 104 YLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDSISKEFK 151
Y + ++ L KD + SDEI EK V K E S ++S+E K
Sbjct: 180 YSKAELEALGEVLKDTKVWVLSDEIYEKLVYK--GEFVSCAAVSEEMK 225
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 23.9 bits (50), Expect = 2.5
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 44 LDESYQENYIYSKRL-------KELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQK 96
+ YQE ++ +K+L KELE + + L EK AKE Q Q+ QK
Sbjct: 118 MTRDYQE-FLKTKKLIVDAPDPKELEEQKKALEKEKEAKE-------------QAQKAQK 163
Query: 97 -SMDKERDYLEEKIITLENKFKDMGH-YAASDEINEKQVLKMYQE 139
+K ++ + LEN M + S+ N +++K +E
Sbjct: 164 DKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSELIKQQRE 208
Score = 22.3 bits (46), Expect = 7.2
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 36 KMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLS 85
+M RLE + E Q N + K+++EL + ++ + AK+ S+KT S
Sbjct: 213 QMERLED-MQEQAQANAL--KQIEELNKKQAEEAVRQRAKDKISIKTDKS 259
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 23.9 bits (50), Expect = 2.5
Identities = 24/142 (16%), Positives = 62/142 (42%), Gaps = 22/142 (15%)
Query: 9 MVVLGAILLVLVCLVGYLYLKEKEFYHKM-------RRLEKTL-------------DESY 48
M +G +++V +V ++L ++F + R ++KTL +E
Sbjct: 1 MFGMGFFEILVVLIVAIIFLGPEKFPQAVVDIVKFFRAVKKTLNDAKDTLDKEINIEEIK 60
Query: 49 QENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKER--DYLE 106
+E Y K + L+G+ +E+ + + + + + +Q+ ++S++ ++L
Sbjct: 61 KETLEYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYKRSLETNTIPNHLN 120
Query: 107 EKIITLENKFKDMGHYAASDEI 128
E++ E K++ + E+
Sbjct: 121 EEVSNEEALNKEVSSDESPKEV 142
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 23.5 bits (49), Expect = 3.2
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 31 KEFYHKMRRLEKTLDESYQENYIY---SKRLKELEGRLEGLSL 70
K++ + + K +Y E IY S L+ LEGRLE LS+
Sbjct: 230 KDYAFENKDYSKGNFRNYLEKEIYEQHSSLLECLEGRLEALSV 272
Score = 21.9 bits (45), Expect = 9.3
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 24 GYLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKE 76
G+ +L + + LE+TL + K + L+G L L K AKE
Sbjct: 116 GHAFLSQTDTEVIAHLLEETLKSEGDLLKAFEKSISLLKGSYAILMLHKRAKE 168
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 23.5 bits (49), Expect = 3.2
Identities = 13/58 (22%), Positives = 25/58 (42%)
Query: 101 ERDYLEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVE 158
+ +++ + + NK + + Y E +V+ + D EFK KGE+E
Sbjct: 805 KHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPPHINSSMQDFSVAEFKNQKGELE 862
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 23.5 bits (49), Expect = 3.2
Identities = 9/26 (34%), Positives = 18/26 (68%)
Query: 126 DEINEKQVLKMYQEGYSVDSISKEFK 151
+E++ K+++ Y + YS+ SK+FK
Sbjct: 233 EELDTKRLIPTYSKLYSLKKHSKKFK 258
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 23.5 bits (49), Expect = 3.2
Identities = 26/97 (26%), Positives = 37/97 (37%), Gaps = 17/97 (17%)
Query: 46 ESYQENYI-YSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDY 104
E Y + Y +K + EG +E L E KE I +S K+
Sbjct: 598 EDYLKGYADNNKEYEGYEGLIERLLTEFPLKEPI---------------ISESQKKDFIK 642
Query: 105 LEEKIITLENKFKDMGHYAASDEINEKQVLKMYQEGY 141
L KI+ LEN ++ D IN + + YQ Y
Sbjct: 643 LFGKILKLENILNSFENFNKDDHINPRD-FQDYQSKY 678
Score = 23.1 bits (48), Expect = 4.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 86 HLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEIN 129
H Y Q QK ++ ++ +EE + E + M H + EIN
Sbjct: 770 HAYFQNYIHQKREEEFQNIIEENRLNEEKAYSFMQHAFSGGEIN 813
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 23.1 bits (48), Expect = 4.2
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 51 NYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKII 110
N + S + K+L + L LE++ + + + HL N E S + R L +
Sbjct: 358 NALLSAKAKDLLLKSPSLVLEEAPMSEKGAQKLVLHLQNSQLETLSSGEYSR--LRLAFM 415
Query: 111 TLENKF-KDMGHYAASDEIN 129
LE +F KD DE++
Sbjct: 416 LLEMEFLKDFKGVLVLDEMD 435
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 23.1 bits (48), Expect = 4.2
Identities = 12/41 (29%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 65 LEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYL 105
++GL +KS K L+ T L + + +++ D+E DY+
Sbjct: 681 IQGLISDKSQKIKKKLEETRDQLKSLCESVKEPKDEE-DYI 720
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 23.1 bits (48), Expect = 4.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 84 LSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMG 120
L L +QLQ KS+ + DY +EK + E K D+G
Sbjct: 53 LKFLNSQLQNSLKSVIESFDYSKEKALE-EIKALDLG 88
Score = 22.7 bits (47), Expect = 5.5
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 50 ENYIYSKRLKELEGRLEGL-------SLEKSAKE-DSSLKTTLSHLYNQLQEIQKSMDKE 101
EN I K + E++ +L+ + LE S K + ++H ++ QK +K
Sbjct: 252 ENLIEVKVIPEVQYKLKKVLPGLFNECLENSLKGLKDRCELEITHKKQEIALAQKEKEKH 311
Query: 102 RDYLEEKIITLENK 115
+ LE++ LENK
Sbjct: 312 LNDLEDQKQILENK 325
>ref|NP_223438.1| putative [Helicobacter pylori J99]
Length = 175
Score = 23.1 bits (48), Expect = 4.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 39 RLEKTLDESYQENYIYSKRLKELEGRLE 66
+++K LD Q+N I K LK++ +LE
Sbjct: 128 QIDKQLDSFKQDNLIDVKPLKDVLAQLE 155
>ref|NP_223029.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 180
Score = 23.1 bits (48), Expect = 4.2
Identities = 13/37 (35%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 31 KEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEG 67
+EF LE ++ +++ Y K ELEGRL+G
Sbjct: 116 EEFQLNSLHLE-VMENNFKAIAFYEKNHYELEGRLKG 151
>ref|NP_223961.1| RIBONUCLEASE HII [Helicobacter pylori J99]
Length = 209
Score = 22.7 bits (47), Expect = 5.5
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 81 KTTLSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINE 130
K L L L++ +K K+R +LE+KI T ++G + NE
Sbjct: 32 KIALEFLKMGLKDSKKLSPKKRFFLEDKIKT----HGEVGFFVVKKSANE 77
>ref|NP_222779.1| putative [Helicobacter pylori J99]
Length = 86
Score = 22.7 bits (47), Expect = 5.5
Identities = 20/87 (22%), Positives = 37/87 (41%), Gaps = 8/87 (9%)
Query: 55 SKRLKELEGRLEGLSLEKSAKEDSSLKTTLSHLYNQLQEIQKSMDKERDYLEEKIITLEN 114
++ ++E G LE E +E +SL H +N ++ D RD E + L+
Sbjct: 8 TEEVREFVGHLERFK-ELLNEEVNSLN---GHFHN----LESWQDARRDKFSEVLDNLKG 59
Query: 115 KFKDMGHYAASDEINEKQVLKMYQEGY 141
F + A K+ +++ +E Y
Sbjct: 60 TFNEFNEAAQEQIAWLKERIRVLEEDY 86
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 22.3 bits (46), Expect = 7.2
Identities = 22/89 (24%), Positives = 34/89 (37%), Gaps = 12/89 (13%)
Query: 88 YNQLQEIQKSMDKERDY-----------LEEKIITLENKFKDMGHYAASDEINEKQVLKM 136
YN+ E+ KSM E D+ EE I EN F Y + + +
Sbjct: 243 YNKADEVAKSMQVEVDFTIDEKNRAILITEEGIKKAENLFGVDNLYKIENAALSHHLDQA 302
Query: 137 YQEGYSVDSISKEFKVSKGEVEFILNMAG 165
+ Y + I K++ V+ EV + G
Sbjct: 303 LKANY-LFFIDKDYIVANNEVVIVDEFTG 330
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 22.3 bits (46), Expect = 7.2
Identities = 15/63 (23%), Positives = 26/63 (40%)
Query: 26 LYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTLS 85
+ L E F +L + + + +E I E EG+ + K D+ + L+
Sbjct: 261 IVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVIELKRDAMSEIVLN 320
Query: 86 HLY 88
HLY
Sbjct: 321 HLY 323
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 22.3 bits (46), Expect = 7.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 36 KMRRLEKTLDESYQENYIYSKRLKELEGRLEGL 68
+++ L++ E E+ Y R+K+LE ++E L
Sbjct: 77 ELKALKQRNSEYKGESDKYKNRIKQLEQKIEAL 109
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 21.9 bits (45), Expect = 9.3
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 44 LDESYQENYIYSKRLKELEGRLEGLSLEKSAKEDSSLKTTL 84
LD+ Q+ I +LKEL+ L+ E KE L TL
Sbjct: 474 LDKFNQKYNIECDKLKELKNYLKNSYKEDKRKEYLQLLLTL 514
>ref|NP_224104.1| putative [Helicobacter pylori J99]
Length = 203
Score = 21.9 bits (45), Expect = 9.3
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 25 YLYLKEKEFYHKMRRLEKTLDESYQENYIYSKRLKEL 61
Y +LKE Y ++ +++++IY + L+ L
Sbjct: 157 YEFLKELNHYGYYELAVNYIENMHEDSFIYDEFLRSL 193
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 21.9 bits (45), Expect = 9.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 86 HLYNQLQEIQKSMDKERDYLEEKIITLE 113
H Y + + +D + LE+KI +LE
Sbjct: 680 HFYTYMGFMVNDLDHQERLLEQKIASLE 707
>ref|NP_224085.1| THYMIDYLATE KINASE [Helicobacter pylori J99]
Length = 191
Score = 21.9 bits (45), Expect = 9.3
Identities = 9/22 (40%), Positives = 15/22 (67%)
Query: 96 KSMDKERDYLEEKIITLENKFK 117
KS+DK + EK++T++ K K
Sbjct: 132 KSLDKIENQGIEKLLTIQQKLK 153
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 21.9 bits (45), Expect = 9.3
Identities = 11/48 (22%), Positives = 25/48 (51%)
Query: 84 LSHLYNQLQEIQKSMDKERDYLEEKIITLENKFKDMGHYAASDEINEK 131
LS L + L+ +QK + D ++++++ N+F + S+ + K
Sbjct: 18 LSFLDDILKHMQKPRFSDSDKVDKRLLIKFNQFNPNSKFIKSNLVGTK 65
>ref|NP_223277.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 313
Score = 21.9 bits (45), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 81 KTTLSHLYNQLQEIQKSMDKERD 103
KTT HL N+ Q + +D E+D
Sbjct: 7 KTTSLHLNNEAQFLCFRLDAEKD 29
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 21.9 bits (45), Expect = 9.3
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 112 LENKFKDMGHYAASDEINEKQVLKMYQEGYSVDSISKEFKVSKGEVEFILNMAGLK 167
L+ +FK+M + +I+ K+ QE Y K+F + E + + K
Sbjct: 187 LQKRFKEMAYLNDGLKISFKEEKTQLQETYFYKDGLKQFVKDSAKKELLTPIIAFK 242
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 21.9 bits (45), Expect = 9.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 103 DYLEEKIITLENKFKDMGHYAASDEINEKQVLK 135
+ LE ++I K ++ GHYA N +V K
Sbjct: 11 EILEAEVIIEYPKDREHGHYATPIAFNLAKVFK 43
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,886
Number of Sequences: 1491
Number of extensions: 9017
Number of successful extensions: 64
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 56
length of query: 168
length of database: 494,079
effective HSP length: 71
effective length of query: 97
effective length of database: 388,218
effective search space: 37657146
effective search space used: 37657146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)