BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645971|ref|NP_208151.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223995.1| putative [Helicobacter pylori J99] 355 e-100
ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE... 24 2.8
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 24 2.8
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 23 3.7
ref|NP_223489.1| putative spermidine synthase [Helicobacter... 23 3.7
ref|NP_222915.1| putative lipopolysaccharide biosynthesis p... 23 3.7
ref|NP_223437.1| putative Outer membrane protein [Helicobac... 23 4.8
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 23 4.8
ref|NP_223950.1| 50S RIBOSOMAL PROTEIN L16 [Helicobacter py... 23 6.2
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 23 6.2
ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter py... 23 6.2
ref|NP_223159.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylor... 22 8.2
>ref|NP_223995.1| putative [Helicobacter pylori J99]
Length = 183
Score = 355 bits (910), Expect = e-100
Identities = 177/183 (96%), Positives = 179/183 (97%)
Query: 1 MAIWGWCFLFLSSLMWGLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLE 60
MAIWGWCFLFLSSLMWG SMHELVLRSQALGFETRLVQCDLSFSYERFISK+KRSLAVLE
Sbjct: 1 MAIWGWCFLFLSSLMWGSSMHELVLRSQALGFETRLVQCDLSFSYERFISKTKRSLAVLE 60
Query: 61 EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHGLI 120
EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRI ALGHGL+
Sbjct: 61 EFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRIIALGHGLV 120
Query: 121 CLKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVHSERKG 180
CLKK SLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIV SERKG
Sbjct: 121 CLKKQSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVDSERKG 180
Query: 181 LKL 183
LKL
Sbjct: 181 LKL 183
>ref|NP_224079.1| BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE [Helicobacter pylori
J99]
Length = 340
Score = 23.9 bits (50), Expect = 2.8
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 10/81 (12%)
Query: 59 LEEFDWLNSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRITALGHG 118
LE DW N GF + + + A Y + L+ EN L+L + + L +G
Sbjct: 4 LENLDWKNLGFSYIKTDFR------FIATYKNGSWSQGELVSENALQLSEGSPV--LHYG 55
Query: 119 LICLKKSSLIAPQTYYGRCVL 139
C + L A ++ G+ +L
Sbjct: 56 QACFE--GLKAYRSQKGKALL 74
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 23.9 bits (50), Expect = 2.8
Identities = 17/75 (22%), Positives = 36/75 (47%), Gaps = 2/75 (2%)
Query: 42 SFSYERFISKSKRSLAVLEEFDWLNSGFD--FSRLNVENDTLELLKALYFKLEKLESLLL 99
SF F+ KS LA + + ++ F +++ L+ + L+ K+EK+E +
Sbjct: 458 SFLLYAFMPKSAMKLASAFRVEITPNNYERFFKAKKLQDMVLQDTEPLFSKIEKIEKIEK 517
Query: 100 KENLLELEQKDRITA 114
E + ++E+ + A
Sbjct: 518 IEKIEKIEKGEEALA 532
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 23.5 bits (49), Expect = 3.7
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 17 GLSMHELVLRSQALGFETRLVQCDLSFSYERFISKSKRSLAVLEEFDWLNSGF 69
GLS ++ + + E L D R K K S + + F W N GF
Sbjct: 74 GLSFSSVIAQQSRMNVERALK--DAFKVKNRGFPKFKNSKSAKQSFSWNNQGF 124
>ref|NP_223489.1| putative spermidine synthase [Helicobacter pylori J99]
Length = 262
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 146 FFGVARDKDFLEITRMHALDIKRYDSFIVHSE 177
F V +K+F ++ LDIK+YD + E
Sbjct: 117 FHEVKNNKNFTHAKQLLDLDIKKYDLILCLQE 148
>ref|NP_222915.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 394
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 2/36 (5%)
Query: 146 FFGVARDKDFLEITRMHALDIKRYDSFIVHSERKGL 181
+FG R+KD + + R A D+ Y+ +H++ G+
Sbjct: 158 YFGAVREKDLIAMDRNSAKDL--YELRQMHAKSIGI 191
Score = 22.3 bits (46), Expect = 8.2
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 122 LKKSSLIAPQTYYGRCVLEGKILAFFGVARDKDFLEITRMHALDIKRYDSF 172
+ +S I T+Y V E ++A + KD E+ +MHA I D+F
Sbjct: 146 ISESFFIPLGTHYFGAVREKDLIAMDRNSA-KDLYELRQMHAKSIGIADAF 195
>ref|NP_223437.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 455
Score = 23.1 bits (48), Expect = 4.8
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 68 GFDFSRLNVENDTLELLKALYFKLE-KLESLLLKENLLELEQKDRITALGHGLICLKKSS 126
GF+ S+LN + + ++ +++S LL +N+ + K + + L +
Sbjct: 39 GFNHSKLNSKEGIFPTATFVTATIKLQVDSNLLPKNIEKHSLKIGVGGILGALAYDSTKT 98
Query: 127 LIAPQTY--YGRCV--LEGKILAFFGVARDKDFLEITRMHALDIKRYDSFIVHS 176
LI T+ YG + L G+ F G A KD L + H + Y+S++ +S
Sbjct: 99 LIDQATHQIYGSELFYLIGRWWGFLGNAPWKDSLIESDAHTRNYVLYNSYLFYS 152
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 23.1 bits (48), Expect = 4.8
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Query: 62 FDWLNSGFDFSRLNVENDTLELLKALYFKLEKLES 96
+DW + G+DF+ N D++ KA Y+K + E+
Sbjct: 638 YDWTDGGYDFTG-NGVFDSVNFNKA-YYKFQGAEN 670
>ref|NP_223950.1| 50S RIBOSOMAL PROTEIN L16 [Helicobacter pylori J99]
Length = 141
Score = 22.7 bits (47), Expect = 6.2
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 17 GLSMHELVLRSQALGFETRLVQCD 40
GL+ L L L F+T++V C+
Sbjct: 112 GLAREALALSQSKLPFKTKIVTCE 135
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 22.7 bits (47), Expect = 6.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 82 ELLKALYFKLEKLESLLLKENLLELEQKDRITALG 116
ELLKA+ FKL+ KEN L+ E + + + G
Sbjct: 71 ELLKAIAFKLK-------KENNLDYEPSEILVSNG 98
>ref|NP_222901.1| TRIOSE PHOPHATE ISOMERASE [Helicobacter pylori J99]
Length = 234
Score = 22.7 bits (47), Expect = 6.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 157 EITRMHALDIKRYDSFIVHSERKGL 181
EIT H ++K + I HSER+ L
Sbjct: 72 EITSKHLEELKIHTLLIGHSERRVL 96
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 22.3 bits (46), Expect = 8.2
Identities = 18/67 (26%), Positives = 36/67 (52%), Gaps = 5/67 (7%)
Query: 48 FISKSKRSLAV-LEEFDWLNSGFDFSRLNVENDTLELLKA----LYFKLEKLESLLLKEN 102
++S + SL ++E++ S F+ S E + L A + +++KLE+ L++E
Sbjct: 80 WLSNAGESLKTKMKEYERFFSEFNTSMHANEQEVTATLNANTENIKSEIKKLENQLIEET 139
Query: 103 LLELEQK 109
+ LEQ+
Sbjct: 140 RMLLEQE 146
>ref|NP_223130.1| putative ZINC PROTEASE [Helicobacter pylori J99]
Length = 443
Score = 22.3 bits (46), Expect = 8.2
Identities = 12/37 (32%), Positives = 20/37 (53%)
Query: 66 NSGFDFSRLNVENDTLELLKALYFKLEKLESLLLKEN 102
++ FD +R ++ L K+L E + SL LKE+
Sbjct: 110 STSFDITRYFIKTSEANLDKSLELFAETMGSLNLKED 146
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.326 0.141 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,723
Number of Sequences: 1491
Number of extensions: 7859
Number of successful extensions: 44
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 14
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)