BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645979|ref|NP_208159.1| type IIS restriction enzyme
M1 protein (mod) [Helicobacter pylori 26695]
(260 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 95 2e-21
ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 92 2e-20
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 69 9e-14
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 66 8e-13
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 65 2e-12
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 58 2e-10
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 53 7e-09
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 52 2e-08
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 44 3e-06
ref|NP_222969.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 44 4e-06
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 30 0.049
ref|NP_222772.1| putative [Helicobacter pylori J99] 27 0.41
ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Heli... 26 1.2
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 25 2.1
ref|NP_223244.1| putative [Helicobacter pylori J99] 25 2.1
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 25 2.1
ref|NP_223386.1| putative [Helicobacter pylori J99] 25 2.7
ref|NP_222781.1| putative [Helicobacter pylori J99] 24 4.6
ref|NP_224084.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 23 6.0
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 23 6.0
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 23 7.8
ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobact... 23 7.8
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 95.1 bits (235), Expect = 2e-21
Identities = 77/263 (29%), Positives = 117/263 (44%), Gaps = 43/263 (16%)
Query: 3 LNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIAS----------------WDSFKNDE 46
LN I D L +KSVD DPPY ++ WD F + E
Sbjct: 8 LNTIIEGDCLEKLKDFPNKSVDFIFADPPYFMQTEGELKRFEGTKFQGVEDHWDKFGSFE 67
Query: 47 EFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFAN 106
E+ TF W+ + LKD GS + + N +L + LN I W K + N
Sbjct: 68 EYDTFCLGWLKECQRILKDNGSICVIGSFQNIFRIGFHLQNLGFWILNDIVWHKSNPVPN 127
Query: 107 -AKKRYNHAQESILFYSMHKKN-YTFNADEIRIAYESAERIKHAQSKGILKNNKRWFPNP 164
A KR +A E++++ + HK + TFN ++ L N+K+
Sbjct: 128 FAGKRLCNAHETLIWCAKHKNSKVTFNYKTMKY----------------LNNDKQE---- 167
Query: 165 KGKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
VW+I E+ K K H + KP+AL++++I +++ D+ILD F G+G
Sbjct: 168 -----KSVWQIPICMGNERLKDVQGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTG 222
Query: 225 MTSLVAKSLERNFIGCESHAEYV 247
T VAKS++R FIG E + Y+
Sbjct: 223 TTGAVAKSMDRYFIGIEKDSFYI 245
>ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 277
Score = 91.7 bits (226), Expect = 2e-20
Identities = 78/249 (31%), Positives = 105/249 (41%), Gaps = 47/249 (18%)
Query: 20 DKSVDLAIIDPPYNL----------KIAS-----WDSFKNDEEFLTFSYAWIDKMLPKLK 64
+ + DL DPPY L KI S WD + F+Y WI+ LK
Sbjct: 36 ENAFDLIFADPPYFLSNDGLSIQSGKIVSVNKGDWDKENGINDIDEFNYQWINNAKKALK 95
Query: 65 DTGSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANAKKRY-NHAQESILFY-S 122
+TGS I T N L LN ITW K + N RY H+ E I++
Sbjct: 96 NTGSLLISGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFSCRYLTHSAEQIIWARK 155
Query: 123 MHKKNYTFNADEIRIAYESAERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITSQRHVE 182
+K + FN YE ++I NNK+ DVW + E
Sbjct: 156 SYKHKHVFN-------YEILKKIN---------NNKQM---------RDVWNFPAIAPWE 190
Query: 183 KEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLERNFIGCES 242
K GK HP+ KP AL+ R++ +S N LI D FSGS T + A L+R FIG E
Sbjct: 191 KANGK-----HPTQKPLALLVRLLLMASDDNSLIGDPFSGSSTTGIAANLLKREFIGIEK 245
Query: 243 HAEYVHGSL 251
+ ++ S+
Sbjct: 246 ESRFIKISM 254
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 69.3 bits (168), Expect = 9e-14
Identities = 65/241 (26%), Positives = 95/241 (38%), Gaps = 51/241 (21%)
Query: 19 EDKSVDLAIIDPPYNLKIAS-WDSFKN-----------DEEFLTFSYAWIDKMLPKLKDT 66
++ VD I DPPYN+ + + + + K+ D+ F WI + +
Sbjct: 19 QNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLE--WIARYASLINPN 76
Query: 67 GSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFA-NAKKRYNHAQESILFYSMHK 125
G IF + + +L +FI WVK + N +RY E L+ K
Sbjct: 77 GCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVKKK 136
Query: 126 KNYTFNADEIRIAYESAERIKHAQSKGILKNNKRWFPNPKGKLCLDVWEITSQRHVEKEK 185
+ FN KN K P L L ++ V
Sbjct: 137 AKWVFNKP---------------------KNEKYLRP-----LILKSPVVSGIERV---- 166
Query: 186 GKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLERNFIGCESHAE 245
KHP+ K L+E++I ++ ND +LD F GSG T L K+L+RNFIG ES E
Sbjct: 167 ------KHPTQKSLTLMEKIISTHTNPNDTVLDPFMGSGTTGLACKNLKRNFIGIESEKE 220
Query: 246 Y 246
Y
Sbjct: 221 Y 221
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 66.2 bits (160), Expect = 8e-13
Identities = 66/256 (25%), Positives = 112/256 (42%), Gaps = 40/256 (15%)
Query: 21 KSVDLAIIDPPYNL--KIASWDSFKNDEEFLTFSYAWIDKMLPKLKDTGSFYI---FNTP 75
+++D IDPP+N A D F+ D +L+ + + L G+FY+ +
Sbjct: 269 EAIDCIYIDPPFNTGSDFAYIDRFQ-DSTWLSLMHNRLQLAYDFLSPQGNFYLHLDYRAN 327
Query: 76 FNCALFLAYLHHKKVHFLNFITWVKKDGFANAKKRYNHAQESILFYSM-----------H 124
+ + L + K+ +F N I W + + + +S+L+YS +
Sbjct: 328 YLGRMLLNDIFSKE-NFRNEIIWHFRTYQGQIQSNFPRKHDSLLWYSKNCNVNNFFKITY 386
Query: 125 KKNYT----------FNADEIRIAYESAERIKHAQSKGILKNNKRWFPNPK--------- 165
NY F D +I Y + + ++ G LK + PK
Sbjct: 387 SDNYKDTVDYRRWREFIVDNNKIVYPNYPKAD-SRFDGYLKRYLQSTKEPKNGDIIATIN 445
Query: 166 GKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGM 225
G + DVW T + ++ +K + KP+ L+ER+IKASS++N ++ D F+GSG
Sbjct: 446 GYVIDDVW--TDIQAIDPKKADERLQGTLTQKPEKLLERIIKASSNENSIVCDFFAGSGT 503
Query: 226 TSLVAKSLERNFIGCE 241
T VA L+R +IG E
Sbjct: 504 TCAVAHKLKRKYIGVE 519
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 65.1 bits (157), Expect = 2e-12
Identities = 72/269 (26%), Positives = 125/269 (45%), Gaps = 54/269 (20%)
Query: 15 LDKLEDKSVDLAIIDPPY-NLKIASWDSFKNDEEFLTFSYAWIDKMLPKLKDTGSFYIFN 73
L+K+ SV+L PPY N +I S +KN +++L+ + K ++ + G F I N
Sbjct: 155 LNKIAPSSVNLIFTSPPYYNARIYS--DYKNYKDYLSAMSQSL-KACFRVLEEGRFIIIN 211
Query: 74 TP----------FNCALFLAYLHHKKV------HFLNFITWVKKD--------GFANAKK 109
F + + ++ +F++ I W+K D G+ KK
Sbjct: 212 VSPIITKRAGREFESVRYPIHFDFHQILIDNGFYFVDEILWIKPDFSVPNRIGGYLQNKK 271
Query: 110 ----RYNHAQESILFYSMHKKNYTFNADE-IRIAYESAERIKHAQSKGILKNNKRWFPNP 164
+ N ES+L Y +K F D+ I+IA +R+K +K N F
Sbjct: 272 PLGYKPNCVSESLLVY---RKKAPFLLDKNIKIA---EKRLKP------IKQNHTLF--- 316
Query: 165 KGKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSG 224
GK L + E T+ ++ + K HP++ P++L ER++ S +N+++ D F+GSG
Sbjct: 317 -GKKELPI-ETTNCWYITPKSSK----DHPAVFPESLCERVLNYYSFENEVVCDPFAGSG 370
Query: 225 MTSLVAKSLERNFIGCESHAEYVHGSLEM 253
+VAKS+ R + CE H +Y +++
Sbjct: 371 TFGMVAKSMGRIPLLCEQHPKYAQNLIKL 399
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 58.2 bits (139), Expect = 2e-10
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 32/261 (12%)
Query: 2 ILNKIYIEDVFTFLD-KLEDKSVDLAIIDPPYNLKIASWDSFKNDEEFLTFSYAWIDKML 60
+LN Y++ F+ KL+++S+D+ + PPY D+ +N + + TF++ I +
Sbjct: 12 LLNNFYVDSCVNFMQHKLQNESIDMILTSPPY-------DNLRNYQGY-TFAFENIANEI 63
Query: 61 PKLKDTGSFYIF-------NTPFNCALFLAYLHHKKVHFL--NFITWVKKDGFANAKKRY 111
++ G ++ N + F L+ +++ F + + + KK+ Y
Sbjct: 64 FRVIKKGGVVVWIVGDKIKNGNKSLTSFRQALYFQQIGFNMHDVMIYAKKNTPFMRSNAY 123
Query: 112 NHAQESILFYSMHKKNYTFNADEIRIAYESAERIKHAQSKGI-LKNNKRWFPNPKGKLCL 170
+A E + S K TFN + A E + +KG KNNK K K
Sbjct: 124 TNAYEYMFVLSKGKPK-TFNPLKEPTARNGMEML--VTNKGADAKNNKILKELKKEKTKN 180
Query: 171 DVWEITSQRHVEKEKGKILKPK----HPSIKPKALIERMIKASSHKNDLILDLFSGSGMT 226
++W H G K HP+I P+ L I + S++ D++ D GSG T
Sbjct: 181 NIW------HYAVGLGGSTNDKIAFNHPAIFPEQLALDHILSWSNERDIVFDPMCGSGTT 234
Query: 227 SLVAKSLERNFIGCESHAEYV 247
+A RNFIG + EY+
Sbjct: 235 CKMAFLHNRNFIGVDISKEYI 255
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 53.1 bits (126), Expect = 7e-09
Identities = 22/45 (48%), Positives = 36/45 (79%)
Query: 197 KPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLERNFIGCE 241
KP+AL++R+++ S+++NDL+LD F+GSG T VA ++R +IG E
Sbjct: 440 KPEALLQRILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIE 484
Score = 32.0 bits (71), Expect = 0.017
Identities = 35/122 (28%), Positives = 47/122 (37%), Gaps = 5/122 (4%)
Query: 15 LDKLEDKSVDLAIIDPPYNLKIASW---DSFKNDEEFLTFSYAWIDKMLPKLKDTGSFYI 71
L K K V IDPPYN S+ D+F N +L F ++ L D G ++
Sbjct: 180 LKKKFAKKVKCIYIDPPYNTGNDSFNYNDNF-NHSSWLVFMKNRLEAAREFLSDDGVIFV 238
Query: 72 FNTPFNCALFLAYLHHKKVHFLNFITWVKKDGFANAKKRYNHAQESILFYSMHKKNYTFN 131
N +L L + NFI + +N+ R E IL Y K FN
Sbjct: 239 -QCDDNEQAYLKVLMDEIFGRENFIACFVWEKTSNSLSRIRIKTEYILCYEQTKFGLIFN 297
Query: 132 AD 133
D
Sbjct: 298 GD 299
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 51.6 bits (122), Expect = 2e-08
Identities = 69/319 (21%), Positives = 120/319 (36%), Gaps = 94/319 (29%)
Query: 6 IYIEDVFTFLDKLEDKS----VDLAIIDPPY---------NLKIASWDSFKNDE------ 46
I E+ L L DK+ +DL IDPP+ N + + + KN +
Sbjct: 6 IQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAYSDK 65
Query: 47 ----EFLTFSYAWIDKMLPKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNF---ITWV 99
+F+ F + + L + GS Y+ +T + ++ + + NF IT +
Sbjct: 66 VVGMDFMEFLKQRLVLLKELLSEQGSIYV-HTDYKIGHYVKVMLDEIFGIQNFRNEITRI 124
Query: 100 KKDGFANAKKRYNHAQESILFYSMHKKNYTFNADEIRIAYESAER--------------- 144
K + + Y + ++ ILFYS K N FN +I + E+
Sbjct: 125 KCNPKNFKRIGYGNIKDMILFYSKGK-NPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTTV 183
Query: 145 ----------------------------------IKHAQSKGILKNNKRWFPNPK----- 165
++ +G+++ + P K
Sbjct: 184 PIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALE 243
Query: 166 --GKLCLDVWEITSQRHVEKEKGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGS 223
GK D+WE ++ P +P+ K L++ +IK SS+K+ ++LD F GS
Sbjct: 244 QVGKRVQDIWEFKDPQY----------PSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGS 293
Query: 224 GMTSLVAKSLERNFIGCES 242
G T A L+R FIG ++
Sbjct: 294 GTTLKSAFLLQRKFIGIDN 312
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 44.3 bits (103), Expect = 3e-06
Identities = 29/104 (27%), Positives = 57/104 (53%), Gaps = 5/104 (4%)
Query: 139 YESAERIK--HAQSKGILKNNK---RWFPNPKGKLCLDVWEITSQRHVEKEKGKILKPKH 193
+ S E++K + Q++ I KNN+ +++ CL V + S++ + + LK
Sbjct: 226 WSSDEKLKELYYQNRLIFKNNRPYEKYYLKESQDNCLSVLDFYSRQGTKDLEKLGLKGLF 285
Query: 194 PSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLERNF 237
+ KP ALI+ ++ S+ K+ +ILD F+GSG T+ + +++
Sbjct: 286 KTPKPVALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNKDY 329
Score = 38.5 bits (88), Expect = 2e-04
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 3 LNKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLKIASWDSFKNDEEFLTFSYAWIDKML-- 60
++K++I + L ++E +S+ IDPPYN K + +F+ ++ + WI++ L
Sbjct: 1 MHKVFIMEALECLKRIEKESIQTIYIDPPYNTKSS---NFEYEDAHADYE-KWIEEHLIL 56
Query: 61 --PKLKDTGSFYIFNTPFNCALFLAYLHHKKVHFLNFI-TWVKKDGFANAKKRYNHAQES 117
LK +G +I + N + + ++ NF+ T++ K + K N E
Sbjct: 57 AKAVLKQSGCIFI-SMDDNKMAEVKIIANEIFGTRNFLGTFITKQATRSNAKHINITHEY 115
Query: 118 ILFYSMHK 125
+L Y+ +K
Sbjct: 116 VLSYAKNK 123
>ref|NP_222969.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 252
Score = 43.9 bits (102), Expect = 4e-06
Identities = 25/55 (45%), Positives = 30/55 (54%)
Query: 192 KHPSIKPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLERNFIGCESHAEY 246
KHP+ P+ L R I+ S D I D FSGSG T L A +L R +G E EY
Sbjct: 183 KHPAPFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEY 237
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 30.4 bits (67), Expect = 0.049
Identities = 35/150 (23%), Positives = 52/150 (34%), Gaps = 32/150 (21%)
Query: 10 DVFTFLDKLEDKSVDLAIIDPPYNLKIASW---DSF--KNDEEFLTFSYA---------- 54
D L + + + + IDPPYN K ++ D F N+E T Y+
Sbjct: 99 DALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLKTLDYSKEKLDYIKNL 158
Query: 55 --------WIDKMLPK-------LKDTGSFYIFNTPFNCA--LFLAYLHHKKVHFLNFIT 97
W+ M P+ LK G +I CA L + +F+
Sbjct: 159 FGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLLCDEIFGEGNFIETFL 218
Query: 98 WVKKDGFANAKKRYNHAQESILFYSMHKKN 127
W K +A + E IL Y +K N
Sbjct: 219 WNKTQTPPSASNKTRKTHEFILCYQKNKDN 248
Score = 29.3 bits (64), Expect = 0.11
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 197 KPKALIERMIKASSH---KNDLILDLFSGSGMTS 227
KP +LI+ +I S+ + D+ILD F+GSG T+
Sbjct: 392 KPVSLIKYLISICSNNTNEGDIILDFFAGSGTTA 425
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 27.3 bits (59), Expect = 0.41
Identities = 19/71 (26%), Positives = 31/71 (42%), Gaps = 4/71 (5%)
Query: 123 MHKKNYTFNADEIRIAYESAERIKHAQ----SKGILKNNKRWFPNPKGKLCLDVWEITSQ 178
+ ++N AD+ + E E K SK +L+N K + K L D +T +
Sbjct: 49 LERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKE 108
Query: 179 RHVEKEKGKIL 189
+ EK K+L
Sbjct: 109 KTELTEKNKVL 119
>ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 227
Score = 25.8 bits (55), Expect = 1.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 7 YIEDVFTFLDKLEDKS------VDLAIIDPPYNLKIASWDSFKNDEEFLT 50
+I D TFLD++ +DL + D PY + A+ + K D + LT
Sbjct: 36 FIRDGATFLDEIRKIDGNFKIFLDLKLYDIPYTMANAALECAKLDIDMLT 85
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 25.0 bits (53), Expect = 2.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 4 NKIYIEDVFTFLDKLEDKSVDLAIIDPPYNLK 35
N++Y +D + K+ S D+ +DPPYN +
Sbjct: 188 NEVYQQDSNDLIGKI---SGDILYLDPPYNAR 216
>ref|NP_223244.1| putative [Helicobacter pylori J99]
Length = 183
Score = 25.0 bits (53), Expect = 2.1
Identities = 20/52 (38%), Positives = 25/52 (47%), Gaps = 9/52 (17%)
Query: 42 FKNDEEFLTFSYAWIDKMLPK--LKDT-------GSFYIFNTPFNCALFLAY 84
FKN L FS + I +L LKD+ SF +PF+C L LAY
Sbjct: 21 FKNKPLGLRFSLSLISVILSNIALKDSLSLNEFLSSFTAPLSPFSCLLILAY 72
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 25.0 bits (53), Expect = 2.1
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 15/126 (11%)
Query: 104 FANAKKRYNHAQESILFYSMHKKNYTFNA--DEIRIAYESAERI--KHAQSKGILKNNKR 159
F N KKR + L Y+ K D + A++SA + + A +KG+ ++
Sbjct: 66 FENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHKSAVEVDKESALTKGLELTMEK 125
Query: 160 WFP-----NPKGKLCLDVWE------ITSQRHVEKEKGKILKPKHPSIKPKALIERMIKA 208
+G CL+ ++ I + EKE GKI++ K K + R
Sbjct: 126 LHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMV 185
Query: 209 SSHKND 214
S KND
Sbjct: 186 SIAKND 191
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 24.6 bits (52), Expect = 2.7
Identities = 14/62 (22%), Positives = 33/62 (52%), Gaps = 4/62 (6%)
Query: 8 IEDVFTFLDKLEDKSVDLAIIDPPYNLKIASWDSFKNDEEFLTFSY--AWIDKMLPKLKD 65
++++ + ++ ++ + +A+ P++L + W K+ EEF S+ A D K+K+
Sbjct: 207 LDELISLSEEEKESLMIVAVAANPFDLGVEHW--LKHQEEFQKLSHIKALQDATQKKIKE 264
Query: 66 TG 67
G
Sbjct: 265 NG 266
>ref|NP_222781.1| putative [Helicobacter pylori J99]
Length = 139
Score = 23.9 bits (50), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 67 GSFYIFNTPFNCALFLAYLHHKKVHFLNFITWVKK 101
G +Y++NT + LFL + K LN ++KK
Sbjct: 100 GGYYLWNTTTDVVLFLDTDNGSKKVLLNLNMFLKK 134
>ref|NP_224084.1| putative [Helicobacter pylori J99]
Length = 191
Score = 23.5 bits (49), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 103 GFANAKKRYNHAQESILFYSMHKKNYTFNADE 134
G A ++A +S+ F + + +N+TF DE
Sbjct: 118 GRLRANNAVSYAGKSLEFRANNPRNFTFRGDE 149
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 23.5 bits (49), Expect = 6.0
Identities = 17/60 (28%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Query: 185 KGKILKPKHPSIKPKALIERMIKASSHKNDLILDLFSGSGMT--SLVAKSLERNFIGCES 242
KGK+L + S++ K++ E N+++ L +GS T L S + NF+ E+
Sbjct: 208 KGKVLLSANKSLQDKSITEIYKSVPKATNEVMAILENGSKATLEYLDPFSHKENFLAVET 267
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 23.5 bits (49), Expect = 6.0
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 15 LDKLEDKSVDLAIIDPPYNLKI----ASWDSFKN 44
+ LED S+D+A++ + +K+ A W N
Sbjct: 236 MQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGN 269
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 23.1 bits (48), Expect = 7.8
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 197 KPKALIERMIKASSHKNDLILDLFSGSGMTSLVAKSLERNFIGC 240
K K +IE A S ++++ L + + + +++A + + +F+ C
Sbjct: 138 KDKEMIELGFIAKSMQHEITLTIEGLNELKTIIAVAKQNDFVAC 181
>ref|NP_223269.1| UROPORPHYRINOGEN DECARBOXYLASE [Helicobacter pylori J99]
Length = 339
Score = 23.1 bits (48), Expect = 7.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 38 SWDSFKNDEEFLTFSYAWIDKMLPKLK 64
SW S E +L FS+ ++ K+ +LK
Sbjct: 202 SWASALEKEAYLEFSWDYLKKISKELK 228
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 310,922
Number of Sequences: 1491
Number of extensions: 15583
Number of successful extensions: 79
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 29
length of query: 260
length of database: 494,079
effective HSP length: 76
effective length of query: 184
effective length of database: 380,763
effective search space: 70060392
effective search space used: 70060392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)