BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646208|ref|NP_208161.1| Adenine-specific DNA
methylase [Helicobacter pylori 26695]
(809 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 833 0.0
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 241 5e-65
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 149 3e-37
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 116 2e-27
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 105 5e-24
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 59 5e-10
ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 50 2e-07
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 47 3e-06
ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (... 45 6e-06
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 41 1e-04
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 37 0.003
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 35 0.010
ref|NP_223787.1| putative [Helicobacter pylori J99] 34 0.013
ref|NP_222969.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 34 0.013
ref|NP_223534.1| putative [Helicobacter pylori J99] 34 0.017
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 33 0.037
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 32 0.049
ref|NP_222912.1| putative [Helicobacter pylori J99] 31 0.14
ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [... 30 0.32
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 29 0.41
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 29 0.54
ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helic... 29 0.54
ref|NP_223659.1| putative [Helicobacter pylori J99] 28 0.71
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 28 0.92
ref|NP_223610.1| putative [Helicobacter pylori J99] 28 0.92
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 28 0.92
ref|NP_223069.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_223055.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_223759.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobact... 27 1.6
ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-... 27 1.6
ref|NP_223586.1| putative [Helicobacter pylori J99] 27 2.1
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 27 2.1
ref|NP_223990.1| putative [Helicobacter pylori J99] 27 2.7
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 27 2.7
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 26 3.5
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 26 3.5
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 26 3.5
ref|NP_223265.1| putative secretion/efflux abc transporter,... 26 3.5
ref|NP_222809.1| putative keto-acid dehydrogenase [Helicoba... 26 3.5
ref|NP_222848.1| putative [Helicobacter pylori J99] 26 4.6
ref|NP_222796.1| putative [Helicobacter pylori J99] 26 4.6
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 25 6.0
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 25 6.0
ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 25 6.0
ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99] 25 6.0
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 7.8
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 7.8
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 25 7.8
ref|NP_223632.1| putative [Helicobacter pylori J99] 25 7.8
ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERME... 25 7.8
ref|NP_222951.1| putative [Helicobacter pylori J99] 25 7.8
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 833 bits (2153), Expect = 0.0
Identities = 454/696 (65%), Positives = 517/696 (74%), Gaps = 65/696 (9%)
Query: 132 VKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDLVFNLK----DTDKKTNTLNFSVT 187
+KSETIYKDFCFELE ILFNFD SLLESKKYNEKVDL+F+LK D D KTNTLNFSVT
Sbjct: 1 MKSETIYKDFCFELEGILFNFDTSLLESKKYNEKVDLIFDLKSIVKDKDTKTNTLNFSVT 60
Query: 188 LSSKGNQTKISEILKECFNQSVKLDEEILKKAFGKFKKQGSMDYFIHKNALGFLKEQLDL 247
LSSKG QTK +EILKEC NQ VKLDEEILKKAF KFKKQGSMDYFIHKNA GFLKEQLDL
Sbjct: 61 LSSKGTQTKTNEILKECSNQGVKLDEEILKKAFVKFKKQGSMDYFIHKNAQGFLKEQLDL 120
Query: 248 YLFEYLFKEMTAFDAKRLNEINTIKEVALEVVSLVSEFENELCKIWNKPRFVLNSHFIVS 307
YLFEYLFKEMTAFD KRLN INTIKEVALEV++LVSEFENELCKIWNKPR VLNSHFIVS
Sbjct: 121 YLFEYLFKEMTAFDHKRLNGINTIKEVALEVIALVSEFENELCKIWNKPRLVLNSHFIVS 180
Query: 308 LDQLKAKNYDLNKITNHPNYPKQVKEWQDLNLKITDNFLENEFLPLDTIYFKDLEEEVTN 367
LD+LKAKNYDL+KITNHPNYPKQVKEWQDLNL+I DN L NEFLPLDT+YFKDLEEEV +
Sbjct: 181 LDKLKAKNYDLSKITNHPNYPKQVKEWQDLNLEIADNLLGNEFLPLDTLYFKDLEEEVKS 240
Query: 368 LFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLS 427
LFNE+EINGTLIKSENYQALNSLKNRYKEAIDCIYIDPP+NT ++F Y D F+ S+WLS
Sbjct: 241 LFNENEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPFNT-GSDFAYIDRFQDSTWLS 299
Query: 428 MMENRLELARKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVK 487
+M NRL+LA L+ +G ++ +D ++L++++F+ +NF I W F + +
Sbjct: 300 LMHNRLQLAYDFLSPQGNFYLHLDYRANYLGRMLLNDIFS---KENFRNEIIW-HFRTYQ 355
Query: 488 ND-AANFSKNIEYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFS 546
+NF + + +L Y KN + N N +K+ + + D V + F
Sbjct: 356 GQIQSNFPRKHDSLLWYSKNCNVN----------NFFKITYSDNY--KDTVDYRRWREF- 402
Query: 547 PYTFLNGKTWSPPSGTFWRYSIGTLKDMEQNNRIVF-------NGKNPMAKRYLSEVAEG 599
+ NN+IV+ + + KRYL E
Sbjct: 403 ---------------------------IVDNNKIVYPNYPKADSRFDGYLKRYLQSTKEP 435
Query: 600 RKSSTFWDGSEVGYNLNGDAEIKQLFNGNKVFN------NPKPEALLQRILEISTKENDL 653
+ + GY ++ Q + K KPE LL+RI++ S+ EN +
Sbjct: 436 KNGDII--ATINGYVIDDVWTDIQAIDPKKADERLQGTLTQKPEKLLERIIKASSNENSI 493
Query: 654 VLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPRLKKVIGGFKSGAAKEFDGGGVI 713
V DFFAGSGTTCAVAHK+KRKYIG+EMGEHFESVILPRLKKVIGGFKSGA KEF+GGGVI
Sbjct: 494 VCDFFAGSGTTCAVAHKLKRKYIGVEMGEHFESVILPRLKKVIGGFKSGALKEFNGGGVI 553
Query: 714 KVYELESYEEILRKIKYEDNDKPLAYDEQYSDLVERKNESYTLNIEALEKMGVDIKETLE 773
KVYELESYEEILRKIKYEDNDKPLAY+EQYSDLVERKNESYTLNIEALE MGVDIKETLE
Sbjct: 554 KVYELESYEEILRKIKYEDNDKPLAYEEQYSDLVERKNESYTLNIEALENMGVDIKETLE 613
Query: 774 NLWGVGVEFFNEKVVKFKGNDKEVEILKALKEALIW 809
NL GVGVEFFNEKVVKFKGNDKEV ILKALKEALIW
Sbjct: 614 NLHGVGVEFFNEKVVKFKGNDKEVSILKALKEALIW 649
Score = 25.4 bits (54), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 50 YYQSKKQELEKLINLKCQNNNDLKEELFDKLYSFFKRYLSANGGIYFN 97
Y++ ++E++ L N N +K E + L S RY A IY +
Sbjct: 230 YFKDLEEEVKSLFNENEINGTLIKSENYQALNSLKNRYKEAIDCIYID 277
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 241 bits (615), Expect = 5e-65
Identities = 161/402 (40%), Positives = 209/402 (51%), Gaps = 73/402 (18%)
Query: 371 EDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLSMME 430
+DE LIK N AL+SLK ++ + + CIYIDPPYNT N+ F Y DNF SSWL M+
Sbjct: 161 KDENTNYLIKGNNLIALHSLKKKFAKKVKCIYIDPPYNTGNDSFNYNDNFNHSSWLVFMK 220
Query: 431 NRLELARKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVKNDA 490
NRLE AR+ L+D G +FV DDNEQAYLKVLMDE+F G +NF+A W++ N
Sbjct: 221 NRLEAAREFLSDDGVIFVQCDDNEQAYLKVLMDEIF---GRENFIACFVWEK---TSNSL 274
Query: 491 ANFSKNIEYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPVWAKSGNNFSPYTF 550
+ EYILCY + LI N A+ G +F
Sbjct: 275 SRIRIKTEYILCY-EQTKFGLIFNGDM---------------------AEEGQDFPILNE 312
Query: 551 LNGK--TWSPPSGTFWRYSIGTLKDMEQN----------------NRIVFNGKNPMAKRY 592
+N K PP+ +++ G +K + N N + N K +
Sbjct: 313 VNVKRTLQFPPNSIYFKTFKGVIKPTKFNKMELIDDLRIVNKTNSNMVRINAKFKWTQDK 372
Query: 593 L-SEVAEG----------------------RKSSTFWDGSEVGYNLNGDAEIKQLF--NG 627
L E+ EG + S+ F V N+ +EIK LF +
Sbjct: 373 LDDEIKEGTTFVIKSDEFSMRYIRKGDREVKASNVFNAECGVTTNIKATSEIKVLFANSN 432
Query: 628 NKVFNNPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESV 687
+F+ PKPEALLQRILEIST ENDLVLDFFAGSGTTCAVAHKMKR+YIGIE ++ E++
Sbjct: 433 TDLFSTPKPEALLQRILEISTNENDLVLDFFAGSGTTCAVAHKMKRRYIGIEQMDYIETI 492
Query: 688 ILPRLKKVIGGFKSGAAK--EFDGGGVIKVYELESYEEILRK 727
RLKKVI G + G +K +F GGG EL+ ++K
Sbjct: 493 TKERLKKVIEGEQGGISKKCDFKGGGSFVYAELKEVNSGIKK 534
Score = 26.6 bits (57), Expect = 2.7
Identities = 20/87 (22%), Positives = 40/87 (44%), Gaps = 2/87 (2%)
Query: 127 KDLYYVKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDLVFNLKDTDKKTNTLNFSV 186
+D + + + F I F +++ K+N K++L+ +L+ +K TN+ +
Sbjct: 305 QDFPILNEVNVKRTLQFPPNSIYFKTFKGVIKPTKFN-KMELIDDLRIVNK-TNSNMVRI 362
Query: 187 TLSSKGNQTKISEILKECFNQSVKLDE 213
K Q K+ + +KE +K DE
Sbjct: 363 NAKFKWTQDKLDDEIKEGTTFVIKSDE 389
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 149 bits (376), Expect = 3e-37
Identities = 144/491 (29%), Positives = 208/491 (42%), Gaps = 106/491 (21%)
Query: 370 NEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSS----- 424
NE LIK +N AL LK Y E I IYIDPPYNT+N+ FIY D+F +S+
Sbjct: 84 NESTSKHILIKGDNLDALKILKQSYSEKIKMIYIDPPYNTKNDNFIYGDDFSQSNEEVLK 143
Query: 425 -----------------------WLSMMENRLELARKLLNDKGAMFVSIDDNEQAYLKVL 461
WLS M RL LA+ LL G +F+SIDDNE A LK+L
Sbjct: 144 TLDYSKEKLDYIKNLFGSKCHSGWLSFMYPRLLLAKDLLKQDGVIFISIDDNECAQLKLL 203
Query: 462 MDEVFNGGGGDNFVASISWKQFHSVKNDAANFSKNIEYILCYCKN-FSKNLIS------- 513
DE+F G NF+ + W + + + + K E+ILCY KN +K +I+
Sbjct: 204 CDEIFGEG---NFIETFLWNKTQTPPSASNKTRKTHEFILCYQKNKDNKKMIAKFSDGGD 260
Query: 514 ----NEPFDK------SNLYKLKDENGFYK---------LDPVWAKSGNNFSPYTFLNGK 554
NE + +N +NG YK LD + +G + + L G
Sbjct: 261 APLWNETNSERILTFPANYVFSNLKNGIYKKGIRDKIEVLDDIEVYNGKIINSFR-LKG- 318
Query: 555 TWSPPSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRYLSEVAE-GRKSSTFWDGSEVGY 613
+R+ TL + NN + + + RY E ++ VG
Sbjct: 319 --------HFRWKQETLNEEIINNVFLVVKSDKFSIRYCREGERIVMPTNEISKKDNVGT 370
Query: 614 NLNGDAEIKQLFNGNKVFNNPKPEALLQRILEI---STKENDLVLDFFAGSGTTCAVAHK 670
N E+ +LF+ NK+FN KP +L++ ++ I +T E D++LDFFAGSGTT AH
Sbjct: 371 NETASKELFKLFDNNKIFNFNKPVSLIKYLISICSNNTNEGDIILDFFAGSGTT---AH- 426
Query: 671 MKRKYIGIEMGEHFESVILPRLKKVIGGFKSGAAKEFDGGGVIK----VYELESYEEILR 726
V+ KS K +GGG+ V++ + +
Sbjct: 427 -----------------------AVLESNKSDYQKLSEGGGLFNGLNAVFKERRFILVQL 463
Query: 727 KIKYEDNDKPLAYDEQYSDLVERKNESYTLNIEALEKMGVDIKETLENLWGVGVEFFNEK 786
K E N AYD + L + + E +++ G IKE +L VG F
Sbjct: 464 DEKIEKNKS--AYDFCLNTLKSTSPSIFDITEERIKRAGAKIKEACAHL-DVGFRAFEII 520
Query: 787 VVKFKGNDKEV 797
+ NDK +
Sbjct: 521 DDETHTNDKNL 531
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 116 bits (291), Expect = 2e-27
Identities = 96/338 (28%), Positives = 149/338 (43%), Gaps = 63/338 (18%)
Query: 385 QALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLSMMENRLELARKLLNDKG 444
+AL LK KE+I IYIDPPYNT+++ F Y D + + +E L LA+ +L G
Sbjct: 8 EALECLKRIEKESIQTIYIDPPYNTKSSNFEYED--AHADYEKWIEEHLILAKAVLKQSG 65
Query: 445 AMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVKNDAANFSKNIEYILCYC 504
+F+S+DDN+ A +K++ +E+F G NF+ + KQ + +++A + + EY+L Y
Sbjct: 66 CIFISMDDNKMAEVKIIANEIF---GTRNFLGTFITKQ--ATRSNAKHINITHEYVLSYA 120
Query: 505 KNFS----------------------------------------------KNLISNEPFD 518
KN + K L E F+
Sbjct: 121 KNKAFAPGFKILRTLLPIYAKALKDLMRTIKNVFKQKGQAQAQLILKEQIKELSQKEHFN 180
Query: 519 KSNLYKLKDENGFYKLDPVWAKSGNNFSPYTFLNGKTWSPPSGTFWRYSIGTLKDMEQNN 578
Y L DE G + N S P W S LK++ N
Sbjct: 181 FLKNYNLVDEKGEIYFAKDLSTPSNPRSVAIQEINLFLEPLKSRGWS-SDEKLKELYYQN 239
Query: 579 RIVFNGKNPMAKRYLSEVAEGRKSSTFWDGSEVGYNLNGDAEIKQLFNGNK-VFNNPKPE 637
R++F P K YL E + S + Y+ G ++++L G K +F PKP
Sbjct: 240 RLIFKNNRPYEKYYLKESQDNCLSVLDF------YSRQGTKDLEKL--GLKGLFKTPKPV 291
Query: 638 ALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKY 675
AL++ +L ST ++ ++LDFFAGSGTT ++ + Y
Sbjct: 292 ALIKYLLLCSTPKDSIILDFFAGSGTTAQAVIEVNKDY 329
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 105 bits (262), Expect = 5e-24
Identities = 100/334 (29%), Positives = 152/334 (44%), Gaps = 59/334 (17%)
Query: 378 LIKSENYQALNSLKN--RYKEAIDCIYIDPPY-----------------NTQNNEFIYAD 418
LI++EN AL L N K ID IYIDPP+ N++N + Y+D
Sbjct: 5 LIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAYSD 64
Query: 419 NFKRSSWLSMMENRLELARKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASI 478
++ ++ RL L ++LL+++G+++V D Y+KV++DE+F G NF I
Sbjct: 65 KVVGMDFMEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIF---GIQNFRNEI 121
Query: 479 SWKQFHSVKNDAANFSK----NI-EYILCYCKNFSKNLISNE---PFDKSNLY----KLK 526
+ +K + NF + NI + IL Y K KN I NE P+ +L K+
Sbjct: 122 T-----RIKCNPKNFKRIGYGNIKDMILFYSK--GKNPIFNEPKIPYTPQDLEKRFPKID 174
Query: 527 DENGFYKLDPVWAKSGNNFSPYTFLNGKTWSPPSGTFWRYSIGTLKDMEQNNRIVF-NGK 585
+ Y P+ A G S K PP G WR I TL+ ++ I + N
Sbjct: 175 KDKRRYTTVPIHA-PGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNN 233
Query: 586 NPMAKRYLSEVAEGRKSSTFWDGSEVGYNLNGDAEIKQLFNGNKVFNNPKPEALLQRILE 645
NP K Y E G++ W+ + Y + K LL I++
Sbjct: 234 NPRKKIYALEQV-GKRVQDIWEFKDPQY---------------PSYPTEKNAQLLDLIIK 277
Query: 646 ISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIE 679
S+ ++ +VLD F GSGTT A ++RK+IGI+
Sbjct: 278 TSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGID 311
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 58.9 bits (141), Expect = 5e-10
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 617 GDAEIKQLFNGNKVFNNPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYI 676
G+ +K + G KV + KPEALL++I+ +TK D++LD F G+GTT AVA M R +I
Sbjct: 178 GNERLKDV-QGKKVHSTQKPEALLKKIILSATKPKDIILDPFFGTGTTGAVAKSMDRYFI 236
Query: 677 GIEMGEHFESVILPRL 692
GIE + RL
Sbjct: 237 GIEKDSFYIKEAAKRL 252
>ref|NP_222806.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 277
Score = 50.1 bits (118), Expect = 2e-07
Identities = 48/158 (30%), Positives = 73/158 (45%), Gaps = 30/158 (18%)
Query: 560 SGTFWR-YSIGTLK---DMEQNNRIVFNGKNP---MAKRYLSEVAEGRKSSTFWDGSEVG 612
SGT+ +S+G + D + N I + NP + RYL+ AE W
Sbjct: 103 SGTYHNLFSLGRILQKLDFKILNLITWQKTNPPPNFSCRYLTHSAE----QIIWARKSYK 158
Query: 613 YNLNGDAEIKQLFNGNK----VFNNP---------------KPEALLQRILEISTKENDL 653
+ + EI + N NK V+N P KP ALL R+L +++ +N L
Sbjct: 159 HKHVFNYEILKKINNNKQMRDVWNFPAIAPWEKANGKHPTQKPLALLVRLLLMASDDNSL 218
Query: 654 VLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPR 691
+ D F+GS TT A+ +KR++IGIE F + + R
Sbjct: 219 IGDPFSGSSTTGIAANLLKREFIGIEKESRFIKISMNR 256
Score = 25.0 bits (53), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 388 NSLKNRYKEAIDCIYIDPPYNTQNN 412
N + +++ A D I+ DPPY N+
Sbjct: 29 NEVLPQFENAFDLIFADPPYFLSND 53
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 46.6 bits (109), Expect = 3e-06
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 584 GKNPMAKRYLSEVAEGRKSSTFWDGSEVGYNLNGDAEIKQLFNGNKVFNNPKPEAL-LQR 642
G + + L E+ + + + W L G K FN +F PE L L
Sbjct: 161 GADAKNNKILKELKKEKTKNNIW---HYAVGLGGSTNDKIAFNHPAIF----PEQLALDH 213
Query: 643 ILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPRLKK 694
IL S E D+V D GSGTTC +A R +IG+++ + + + RL++
Sbjct: 214 ILSWSN-ERDIVFDPMCGSGTTCKMAFLHNRNFIGVDISKEYIQIAQKRLQQ 264
>ref|NP_222765.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 230
Score = 45.4 bits (106), Expect = 6e-06
Identities = 23/58 (39%), Positives = 32/58 (54%)
Query: 635 KPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHFESVILPRL 692
K L+++I+ T ND VLD F GSGTT +KR +IGIE + + + RL
Sbjct: 172 KSLTLMEKIISTHTNPNDTVLDPFMGSGTTGLACKNLKRNFIGIESEKEYFQIAQKRL 229
Score = 25.8 bits (55), Expect = 4.6
Identities = 36/158 (22%), Positives = 68/158 (42%), Gaps = 15/158 (9%)
Query: 378 LIKSENYQALNSLKNRYKE--AIDCIYIDPPYN-TQNNEFIYADNFKR-----SSWLSMM 429
+I+ + A +K+ +++ +D I DPPYN + N F + KR W
Sbjct: 1 MIQIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNF 60
Query: 430 ENRLELAR--KLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVK 487
+ +AR L+N G M + +Y+ ++E NG +F+ + K +
Sbjct: 61 KLLEWIARYASLINPNGCMVIFCSYRFISYIADFLEE--NGFVVKDFIQWV--KNNPMPR 116
Query: 488 NDAANFSKNIEYILCYCKNFSKNLISNEPFDKSNLYKL 525
N + ++ E+ L K +K + N+P ++ L L
Sbjct: 117 NIHRRYVQDTEFALWAVKKKAK-WVFNKPKNEKYLRPL 153
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 40.8 bits (94), Expect = 1e-04
Identities = 65/307 (21%), Positives = 118/307 (38%), Gaps = 80/307 (26%)
Query: 377 TLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLSMMENRLELA 436
+L+ +N Q LN + +++ I+ PPY N IY+D +LS M L+
Sbjct: 145 SLLVGDNAQTLNKIA---PSSVNLIFTSPPYY---NARIYSDYKNYKDYLSAMSQSLKAC 198
Query: 437 RKLLNDKGAMFVSIDDNEQAYLKVLMDEVFNGGGGDNFVASISWKQFHSVKNDAANFSKN 496
++L + + +++ + + ++F SV+
Sbjct: 199 FRVLEEGRFIIINVSP---------------------IITKRAGREFESVR--------- 228
Query: 497 IEYILCYCKNFSKNLISNEPFDKSNLYKLKDENGFYKLDPV-WAKSGNNFSPYTFLNGKT 555
Y +F + +++ +NGFY +D + W K +FS + G
Sbjct: 229 ------YPIHF-------------DFHQILIDNGFYFVDEILWIKP--DFSVPNRIGGYL 267
Query: 556 WSPPSGTFWRYSIGTLKDMEQNNRIVFNGKNPMAKRYLSEVAEGRKSSTFWDGSEVGYNL 615
+ + +G + + +V+ K P ++AE R + + L
Sbjct: 268 QN-------KKPLGYKPNCVSESLLVYRKKAPFLLDKNIKIAEKRLKPI-----KQNHTL 315
Query: 616 NGDAEIKQLFNGNKVFNNPK---------PEALLQRILEISTKENDLVLDFFAGSGTTCA 666
G E+ + N + PK PE+L +R+L + EN++V D FAGSGT
Sbjct: 316 FGKKELP-IETTNCWYITPKSSKDHPAVFPESLCERVLNYYSFENEVVCDPFAGSGTFGM 374
Query: 667 VAHKMKR 673
VA M R
Sbjct: 375 VAKSMGR 381
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 36.6 bits (83), Expect = 0.003
Identities = 37/169 (21%), Positives = 71/169 (41%), Gaps = 13/169 (7%)
Query: 47 KSQYYQSKKQELEKLINLKCQNNNDLKEELFDKLYSFFKRYLSANGGIYFNDTPLYDSLY 106
K ++++ + +ELE+L +N + KE L D+ G+ N++ L L
Sbjct: 642 KQRFFEKETKELEEL-----ENALNEKEALLDEFIEEHSNEEGLFDGLKINESVLKKELK 696
Query: 107 TKSDYEKCSLKKDTALFYKTKDLYYVKSETIYKDFCFELEDILFNFDASLLESKKYNEKV 166
+D E + K + + K+ Y+ ELE F+ +L + NE
Sbjct: 697 NATDLEDKQILKTALEWLEAKNKALKMKNKAYE----ELELKAFHQYKNL----EINEIK 748
Query: 167 DLVFNLKDTDKKTNTLNFSVTLSSKGNQTKISEILKECFNQSVKLDEEI 215
DL+ K + N L + + + ++EI+ N ++LD+E+
Sbjct: 749 DLIIKDKWLNSLKNALENKIQKRTNAFASALNEIISSYSNSLLELDKEV 797
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 34.7 bits (78), Expect = 0.010
Identities = 49/194 (25%), Positives = 80/194 (40%), Gaps = 34/194 (17%)
Query: 42 NLLKAKSQYYQS-----KKQELEKLINLKC------QNNNDLKEELFDKLY------SFF 84
NL+ AKS +S K++ ++L++LK N L++ F+ LY
Sbjct: 43 NLIPAKSDSLESFKEQENKEKAKQLMDLKALQSVYFSKNRKLQDNNFNVLYVAGNTNKIR 102
Query: 85 KRYLSANGGIYFNDTPLYDSLYTKSDYEKCSLKKDTALFYKTKDLYYVKSETIYKDFCFE 144
RY I+ ND +Y SL SD+E L Y T D Y + + + K
Sbjct: 103 LRYAMTTTFIFDNDPIIYVSLGDPSDFE---------LTYPTNDHYDLSNMLVIKPLLIG 153
Query: 145 LEDILFNFDAS------LLESKKYNEKVDLVFNLKDTDKKT-NTLN-FSVTLSSKGNQTK 196
++ L AS L S Y K F++ ++K++ LN S + K Q
Sbjct: 154 VDTNLTVVGASGTIYTYYLFSTTYTSKFQSYFSVFVSNKRSIGKLNILSKSELEKREQEX 213
Query: 197 ISEILKECFNQSVK 210
+++ + FN+ K
Sbjct: 214 LAKTETDNFNKQDK 227
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 34.3 bits (77), Expect = 0.013
Identities = 91/389 (23%), Positives = 149/389 (37%), Gaps = 48/389 (12%)
Query: 20 KIEDKQESLLDPTPKAVKNGMLNLLKAKSQYYQSKKQELEKLINLKCQNNNDLK-EELFD 78
KIE K+ES+ K +KN +A Q KK++ EK C N K EE F
Sbjct: 122 KIESKKESINKENEKKIKN------EASLQVLTQKKEKEEKDFTDSCWKNLYKKNEEEFK 175
Query: 79 KLYSFFKRYLSANGGIY-------FNDTPLYDSLYTKSDYEKCSLKKDTALFYKTKDLYY 131
++ FKR G I N + + K E K T L DL
Sbjct: 176 EILEGFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELALLECDL-- 233
Query: 132 VKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDLVFNLKDTDKKTNTLNFSVTLSSK 191
++I +E + I+ + D ++ K D V ++ K + F +
Sbjct: 234 TDFDSIENHSIWE-QKIVGSGDVAIANLIKTLSNEDWVAQGREYVKDNSICPF---CQKE 289
Query: 192 GNQTKISEILKECFNQSVKLDEEILKKAFGKFKKQGSMDYFIHKNALGFLKEQLDLYLFE 251
+ + L+ F+ S + + +KK DY N E+LD +
Sbjct: 290 TITEEFKKQLESYFDTSYQESTDTIKKM--------KEDY---TNKTDEALERLDEIIKT 338
Query: 252 YLFKEMTAFDAKRLNEINTIKEVALEVVSLVSEFENELCKIWNKPRFVLNSHFIVSL-DQ 310
T D + L I I+ + ++ + + ++ ++ + N + I ++ D
Sbjct: 339 EQNNSQTKLDTENLKRI--IETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDL 396
Query: 311 LKAKNYDLNKITNHPNYPKQVKEWQDLNLKITDNFLENEFLPLDTIYFK---DLEEEVTN 367
+K N +ITNH K +++ + + T FL NEF Y K LE+ + N
Sbjct: 397 IKKAN---EQITNHNETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINN 453
Query: 368 LFNEDEINGTLIKSENYQALNSLKNRYKE 396
L E EI SEN + + L+N KE
Sbjct: 454 L--EKEI------SENQEKVKKLENEIKE 474
Score = 26.2 bits (56), Expect = 3.5
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 718 LESYEEILRKIKYEDNDKPLAYDEQYSDLVERKNESYTLNIEALEKMGVDIKETLENLWG 777
++ +E+ R K + N + + DL+++ NE T + E ++ + K E W
Sbjct: 371 IDKSKEMSRNFKLDSNKNEI---DAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWK 427
Query: 778 VGVEFFNEKVVKF 790
+ F + ++
Sbjct: 428 FLINEFKSDIQEY 440
>ref|NP_222969.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 252
Score = 34.3 bits (77), Expect = 0.013
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 634 PKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHF 684
P P L +R +++ + D + D F+GSGTT A+ + R +G+E+ + +
Sbjct: 187 PFPRELPRRCIQLFSFLEDTIFDPFSGSGTTILEANALGRFSVGLEIEKEY 237
>ref|NP_223534.1| putative [Helicobacter pylori J99]
Length = 614
Score = 33.9 bits (76), Expect = 0.017
Identities = 64/302 (21%), Positives = 122/302 (40%), Gaps = 67/302 (22%)
Query: 125 KTKDLYY--VKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDL-VFNLKDTDKKTNT 181
+T+DL++ +K+ K+ + F + LE ++Y EK +L ++ D K+N
Sbjct: 31 QTEDLWFEILKTSIFIKNSAKDDFSEAFGGELQQLEEEEYYEKKELTLYQTHDIKIKSNA 90
Query: 182 LNFSVTLSSKGNQTKISEILKECFNQSVKLDEEILKKAFGKFKKQGSMDYFIHKNALGFL 241
+ + +KI IL ECF + LD E +Y+
Sbjct: 91 YKRFFEVKVDEDLSKIEIILDECF---IVLDTE---------------EYYQE------- 125
Query: 242 KEQLDLYLFEYLFKEMTAFDAKRLNEINTIKE-VALEVVSLVSEFENELCKIWNKPRFVL 300
+F Y+ KE AF+ + + E + E+ E +N+ ++ P F+
Sbjct: 126 -------MFAYI-KERLAFEGVVFRHFSQMYENLKTELRKYQKEAQNKRFILYASPTFIP 177
Query: 301 N----SHFIVSLDQLKA--------------KNYDL---NKITNHPNYPKQVKEWQDL-N 338
N SHF++ + L +NY + N+ NYPKQ ++ ++L
Sbjct: 178 NTEEKSHFLLEEEYLPTHTIFLSDQEESFVKENYYIAKENQKVACVNYPKQGRDGRNLKG 237
Query: 339 LKITDNFLENEFLPL--DTIYFKDLEEEVTNLFNEDEINGT------LIKSENYQALNSL 390
L I + + + P+ D F++ EE ++ + G L+ ++N+ N +
Sbjct: 238 LYIELSKVAHSPTPIGHDKNAFEEREENNALVYYSKALQGVKMEKGRLVSNQNFIFKNGI 297
Query: 391 KN 392
K+
Sbjct: 298 KS 299
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 32.7 bits (73), Expect = 0.037
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 17/168 (10%)
Query: 470 GGDNFVASISWKQFHSVKNDA-ANFSKNIEYILCYCKNFSKNLISNEPFDKSNLYKLKDE 528
GGD ++ S ND+ ANF+ + N + N + F+++N
Sbjct: 1552 GGDQTQTTLENASSLSFYNDSVANFNGTTAFNGVSYLNLNPN--AQVSFNQANFNNANVT 1609
Query: 529 NGFYKLDPVWAKSGNNFSPYTFLNGKTWSPPSGTFWRYSIGTLKDMEQNNRIVFNGKNPM 588
FY + P++ K+ N + +N K + +++ TL +N + F G +
Sbjct: 1610 --FYGI-PLFGKTPNFGNSVRLINFKGDA-------KFNQATLNLRAKNIHLNFQGASTF 1659
Query: 589 AKRYLSEVAEGRKSS--TFWDGSEVGYNLNGDAEIKQLFNGNKVFNNP 634
+AE ++S E +NLNG + + FNGN VFN P
Sbjct: 1660 ENNSTMNLAESSQASFNALSVEGETNFNLNGSSLLS--FNGNSVFNAP 1705
Score = 25.8 bits (55), Expect = 4.6
Identities = 30/110 (27%), Positives = 44/110 (39%), Gaps = 16/110 (14%)
Query: 541 SGNNFSPYTFLNGKTWSPPSGTFWRYSIGTLK-----DMEQNNRIVFNGKNPMAKRYLS- 594
S NNF+ + S +IGTL + NN IV N N + +
Sbjct: 2556 SANNFAFLGTIKANGLVDFSKVLQNTTIGTLDLGPNATFKANNLIVNNAFNNNSNYRANI 2615
Query: 595 ----EVAEGRKSSTFWDGSEVGYNLNGDAEIKQLFNGNKVFNNPKPEALL 640
VA+G ST +G VG N N + + +FN NNP + ++
Sbjct: 2616 SGNFNVAKGATFSTNENGLNVGGNFNSEGPL--IFN----LNNPTHQTII 2659
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 32.3 bits (72), Expect = 0.049
Identities = 46/202 (22%), Positives = 83/202 (40%), Gaps = 22/202 (10%)
Query: 572 KDMEQNNRIVFNGKNPMAKRYLSEV----AEGRKSSTFWD--GSEVGYNLNGDAEIKQ-L 624
+++ Q N+I+ N ++ K+ LSE+ + + F++ G + L GD E K+ L
Sbjct: 341 REILQQNKILANIRSASVKKILSEIERLSKDNKNYHKFYEPFGKVLKEGLYGDFENKEKL 400
Query: 625 FNGNKVFNNPKPEALLQRILEISTKENDLVLDFFAGSGTTCAVAHKMKRKYIGIEMGEHF 684
+ ++ K E + + + + KEN + + G A + KY +
Sbjct: 401 LELLRFYSKDKGEWISLKEYKENLKENQKSIYYLLGENLDLLKASPLLEKY-----AQKG 455
Query: 685 ESVILPRLKKVIGGFKSGAAKEFDGGGVIKVYELESYEEI-LRKIKYEDNDKPLAYDEQY 743
V+L L I F E+D ES +E+ L +I E D Q+
Sbjct: 456 YDVLL--LSDEIDAFVMPGVNEYDKTPFRDASHSESLKELGLAEIHDEVKD-------QF 506
Query: 744 SDLVERKNESYTLNIEALEKMG 765
DL++ E+ I+ +E G
Sbjct: 507 KDLIKAFEENLKDEIKGVELSG 528
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 30.8 bits (68), Expect = 0.14
Identities = 81/384 (21%), Positives = 140/384 (36%), Gaps = 39/384 (10%)
Query: 191 KGNQTKISEI---LKECFNQSVKLD--EEILKKA--FGKFKKQGSMDYFIHKNAL-GFLK 242
KG Q ++++I LKE +K E+ILKK K K F K + +K
Sbjct: 143 KGKQKQLAKIYSHLKELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEIKDIIK 202
Query: 243 EQLDLYLFEYLFK-EMTAFDAKRLNEINTIKEVALEVVSLVSEFENEL---CKIWNKPRF 298
E + Y FK + F++ K+ SL+ E EN C +P +
Sbjct: 203 EIDEKYPINENFKRQFNEFESNIEKHDEIKKDFERNKESLIREIENHCKNECNSEEEPEY 262
Query: 299 VLNSHFIVSLDQLKAKNYDLNKITNHPNYPKQVKEW------QDLNLKITDNFLENEFLP 352
+N + ++ Q+ KNY + N + K +K + ++L + + +
Sbjct: 263 KIND-LLKNIQQI-CKNYIESHAVN--DVSKDIKSMMCQFYLKQIDLLVNSEIVRYRYSN 318
Query: 353 LDTIYFKDLEEEVTNLFNEDEI-----NGTLIKSE---NYQALNSLKNRYKEAIDCIYID 404
L + L E + L NE I N IK + N + KN + A C +
Sbjct: 319 LFEPIQRSLWESIKILDNESGIYLFPKNIGEIKDKFEANKEKFKQSKNVSEFAEYCRECN 378
Query: 405 PPYNTQNNEFIYADNFKRSSWLSMMENRLELARKLLNDKGAMFVSIDDNEQAYLK----V 460
P T N + +N + + E + D +S + A
Sbjct: 379 P--YTAFNFHLNINNGLSHQFEKFVPIMKEYKEPKITDNDLEAISTKETGLASQLSGHWF 436
Query: 461 LMDEVFNGGGGDNFVASISWKQFHSVKNDAANFSKNIEYILCYCKNFSKNLISNEPFDKS 520
+FN NF + W K F K++E ++F+ + + D+
Sbjct: 437 FQLSLFNK---TNFNPNKIWIPLEFNKRSKIKFDKDLEIYFDSHESFNISKKYLQEIDQE 493
Query: 521 NLYKLKDENGFYKLDPVWAKSGNN 544
+L K+K F+ + + +K NN
Sbjct: 494 SLKKIKQSKDFFSIQKIESKHDNN 517
>ref|NP_223511.1| ADP-L-GLYCERO-D-MANNOHEPTOSE-6-EPIMERASE [Helicobacter pylori J99]
Length = 329
Score = 29.6 bits (65), Expect = 0.32
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 1 MKTNEAQFYEVLENLFIGVKIEDKQESLLDPTPKAVKNGMLNLLKAKSQYYQSKKQELEK 60
M E + +E E L V IED ++ + KA K+G+ N+ ++++ Y +
Sbjct: 211 MAFKEVKLFEFGEQLRDFVYIEDVIQANVKAM-KAQKSGVYNVGYSQARSYN-------E 262
Query: 61 LINLKCQNNNDLKEELFDKLYSFFKRYLSANGGIYFND---TPLYDSLYTKSDY 111
++++ ++ D K Y+FF+++ A+ D TPLYD DY
Sbjct: 263 IVSILKEHLGDFKVSYIKNPYTFFQKHTQAHIEPTILDLDYTPLYDLESGIKDY 316
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 29.3 bits (64), Expect = 0.41
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 4 NEAQFY----EVLENLFIGVKIEDKQ--ESLLDPTPKAVKN-GMLNLLKAKSQYYQSKKQ 56
N + FY + E+LFI K+E ++ + TPK + G ++L+ K + ++ ++
Sbjct: 78 NHSAFYYNQFKTGESLFIYGKLEQSSFNQAYIINTPKILTEFGKISLIFKKVKNHKKIQE 137
Query: 57 ELEKLINLKCQNNNDLKEELFDKLYSFF 84
L+KL++L+ +KE + L F
Sbjct: 138 NLQKLLSLENLKKEGVKENVARLLLEIF 165
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 28.9 bits (63), Expect = 0.54
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 46/226 (20%)
Query: 9 YEVLENLFIGVKIEDKQESLLDPTPKAVKNGMLNLLKAKSQYYQSKKQELEKLINLKCQN 68
+E LE L G K +D+ L + K+ ELEKL + K +
Sbjct: 586 FETLEGLGFGEKTDDENFKLT----------------LNQNEFLKKEPELEKLKDEKYLD 629
Query: 69 NNDLKEELFDKLYSFFKRYLSANGGIYFNDTPLYDSLYTKSDYEKCSLKKDTALFYKTKD 128
LK+ L D+L F+ N+ K +++K L ++ +
Sbjct: 630 FEKLKDFLKDRLIGHFRVRNK-------NERKTEKIKINKENFKKFETLW-AGLNHQARI 681
Query: 129 LYYVKSETIYKDFCFELEDILFNFDASLLESKKY-----NEKVDLVFNLKDTD----KKT 179
Y + SE++ +++I+ N ++S S K ++KV+ + N T+ K
Sbjct: 682 AYAIDSESL-------IDEIVKNINSSFNVSSKIVSVTTHKKVETMGNNAKTEIFERKSA 734
Query: 180 NTLNFSVTLSSKGNQTKISEILKECFNQSVKLDEEILKKAFGKFKK 225
+ +S+ N+ K+S F K+ E I + F + KK
Sbjct: 735 CVWSLHEFISALSNKVKLS------FKSVAKVLENIDENKFNEIKK 774
>ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 406
Score = 28.9 bits (63), Expect = 0.54
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 403 IDPPYNTQNNEFIYADNFKRSSWLSMMENRLELARKLLNDKGAMFVSIDDNEQAYLKVLM 462
+ P NTQ E I D F + + RL + L G ++ ++E+ L V
Sbjct: 141 LKPTANTQTLEGIDFD-FMEKFIAELEQCRLAELQAYLKATGLENTTLSNDEENALNVFN 199
Query: 463 DEVFNGGGGDNFVASISWKQF 483
+ +GGGG N ++W+ F
Sbjct: 200 N---SGGGGGNTPCGLTWQHF 217
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 28.5 bits (62), Expect = 0.71
Identities = 19/47 (40%), Positives = 25/47 (52%), Gaps = 10/47 (21%)
Query: 134 SETIYKDFCFE------LEDILFNFDASLLESKKYNEKVDLVFNLKD 174
SET Y + E LE L +FD + K YNE + LVF++KD
Sbjct: 94 SETAYNEMFLECDKQFILESWLNDFDLT----KDYNETMHLVFSIKD 136
Score = 26.6 bits (57), Expect = 2.7
Identities = 37/198 (18%), Positives = 81/198 (40%), Gaps = 4/198 (2%)
Query: 4 NEAQFYEVLENLFIGVKIEDKQESLLDPTPKAVKNGMLNLLKAKSQYYQSKKQELEKLIN 63
NE + E L+N+ + ++ +K+E L+ LN K + K + K ++
Sbjct: 227 NEPKLKE-LDNIKLQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKDKNKAKALD 285
Query: 64 LKCQNNNDLKEELFDKLYSFFKRYLSANGGIYFNDTPLYDSLYTKSDYEKCSLKKD--TA 121
++ ++ LK+++ + F +++ D S++ K K +
Sbjct: 286 IQNNHSTPLKQKISKFKIALFNHKDTSDDEKESLSIDRIDKRKPVSEHLKNMSKHELYEL 345
Query: 122 LFYKTKDLYYVKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDLVFNLKDTDKKTNT 181
L + K+L ++ + +K+F L + +F+ +K L+ LK DK+
Sbjct: 346 LGFYQKELDKKQNHSAFKNFAI-LNGLDRDFERETKGYSVLKKKEMLLNKLKHLDKRLLD 404
Query: 182 LNFSVTLSSKGNQTKISE 199
N + L+ N+ K +
Sbjct: 405 KNSHLLLAQLRNEVKTKQ 422
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 28.1 bits (61), Expect = 0.92
Identities = 89/392 (22%), Positives = 144/392 (36%), Gaps = 69/392 (17%)
Query: 37 KNGMLNLLKAKSQYYQSKKQELEKLINLKCQNNNDLKEELFDKLYSFF----KRYLSANG 92
KN L KA Q +E+EK + NN LK + + FF K LS
Sbjct: 97 KNRENPLSKAFCQMVLYFLEEIEK------EKNNSLKHTIICNAHEFFLFDCKDLLS--- 147
Query: 93 GIYFNDTPLYDSLYTKSDYEKCSLKKDTALFYKTKDLYYVKSET-IYKDFCFELEDILFN 151
L + K Y+ + K+ T +K +Y E + +DF EL FN
Sbjct: 148 --------LKEDKRIKKFYKNYAKKEGTD---SSKPKFYKDLEQFLQEDFQGELRYTHFN 196
Query: 152 FDASLLESKKYNEKVDLVFNLKDTDKKT---NTLN--------FSVTLSSKGNQTKISEI 200
E + + LK K+T NTLN + + L + ++ KI +
Sbjct: 197 LSDDFKELPLIYQVLSQEVLLKQ--KRTLDANTLNKDFYEELLYILGLEEQNDKGKI--L 252
Query: 201 LKECFNQSVKLDEEILKKAFGKFKKQGSMDYFIH-KNALGFLKEQLDLYL-FEYLFKEMT 258
+K +++ LK+ + + M I N + FL+ L + FE+ KE +
Sbjct: 253 IKP--SRTKNSLSGALKEKYKNLDDEEVMALLIAWNNRILFLRLLESLLISFEHFEKERS 310
Query: 259 AFDAKRLNEINTIKEVALEVVS------LVSEFENELC--------KIWNKPRFVLNSHF 304
+ N + + EV++ L EN++ +++K L H
Sbjct: 311 FLTTGNFKDFNALNTLFFEVLAKKNSERLPEIKENKILGKIPYLNSSLFDKTPLELKGHE 370
Query: 305 IVSLDQLKAKNYDLNKITNHPNYPKQVKEWQDLNLKITDNFLENEFLPLDTIYFKDLEEE 364
I LD K + Y + + H NY K +L + + F + L T KD+++
Sbjct: 371 IKLLDNKKLEIYKNSVLKKHENYQK-----DKASLPLLEYFFKFLHLYKFTTTPKDIKD- 424
Query: 365 VTNLFNEDEINGTLIKSENYQALNSLKNRYKE 396
N D LI + N YKE
Sbjct: 425 -----NTDTSESRLINPSVLGLVFEKLNGYKE 451
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 28.1 bits (61), Expect = 0.92
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 157 LESKKYNEKVDLVFN---LKDTDKKTNTLNFSVTLSSKGNQTKISEILKECFNQSVKLDE 213
LE +K K+ + N L+DT+ K ++ Q K+SEI E +S+ ++E
Sbjct: 49 LEEEKLALKLQVSKNEQTLQDTNAKIASI-----------QKKMSEIKSERELRSLNIEE 97
Query: 214 EILKKAFGKFKKQGSMDYFIHKNALGFLKEQLDLYLFEYLFKEMTAFDAKRL--NEINTI 271
+I K+ Q + + +N + E+ ++ E L E A + + L NE+ I
Sbjct: 98 DIAKER----SNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVENEVKNI 153
Query: 272 KE 273
KE
Sbjct: 154 KE 155
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 28.1 bits (61), Expect = 0.92
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Query: 128 DLYYVKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDLVFN-LKDTDKKTNTLNFSV 186
D+ + +++YK F EL DI ++ A + E+++Y ++ +F+ LK D +
Sbjct: 610 DVANEQRKSVYK-FRDELLDINYDISAKIAENREY--ALNQIFSKLKAFDHQN------- 659
Query: 187 TLSSKGNQTKISEILKECFNQSVKLDEEILKKA 219
S+ + ILKE FN SV+L++ L+KA
Sbjct: 660 --LSEEELLGLKNILKEDFNASVELED--LEKA 688
Score = 25.0 bits (53), Expect = 7.8
Identities = 19/58 (32%), Positives = 27/58 (45%), Gaps = 5/58 (8%)
Query: 363 EEVTNLFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNF 420
++ NLF D L K EN AL+ ++ +A +ID Y NNE + D F
Sbjct: 276 KKAENLFGVDN----LYKIEN-AALSHHLDQALKANYLFFIDKDYIVANNEVVIVDEF 328
>ref|NP_223069.1| putative [Helicobacter pylori J99]
Length = 438
Score = 27.7 bits (60), Expect = 1.2
Identities = 24/106 (22%), Positives = 46/106 (42%), Gaps = 13/106 (12%)
Query: 116 LKKDTALFYKTKDLYYVKSETIYKDFCFELEDILFNFDASLLESKKYNEKVDLVFNLKDT 175
+K +F K + + Y +F LE++ D +K K+ V +K++
Sbjct: 316 VKNKQEVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQID-----NKDQMVKIGSVVEVKES 370
Query: 176 -------DKKTNTLNFSVTLSSKGNQTKISEILKECFNQSVKLDEE 214
+ + N + FSV+ SK N+T + K+ F + LD++
Sbjct: 371 FYIHAMDNIRANVIGFSVSNESKPNETGYTIKFKD-FQKRFSLDKQ 415
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 27.7 bits (60), Expect = 1.2
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 716 YELESYEEILRKIKYEDNDKPLAYDEQYSDLVERKNESYTLNIEALE-------KMGVDI 768
Y++ Y L+ + Y++ K YD + +L+E + ++ LE K +D
Sbjct: 699 YQMAIYVRALKNLGYKEPIKAFFYDLRKGELLEEDELTLQAKMDHLEFSLIPKLKQEIDF 758
Query: 769 KETLE 773
++TLE
Sbjct: 759 EKTLE 763
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 27.3 bits (59), Expect = 1.6
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 6/105 (5%)
Query: 1 MKTNEAQFYEVLENLFIGVKIEDK--QESLLDPTPKAVKNGMLNLLKAK----SQYYQSK 54
M NE + L +K E K + L++ T + + + + L +A+ +Q ++K
Sbjct: 106 MHANEQEVTNTLNANAENIKSEIKKLENQLIETTTRLLTSYQIFLNQARDNANNQITKNK 165
Query: 55 KQELEKLINLKCQNNNDLKEELFDKLYSFFKRYLSANGGIYFNDT 99
Q LE + K NN++ + + + +AN I N T
Sbjct: 166 TQSLEAITQAKNNANNEISNNQTQAITNITEAKTNANNEISNNQT 210
>ref|NP_223370.1| RNA POLYMERASE SIGMA-54 FACTOR [Helicobacter pylori J99]
Length = 414
Score = 27.3 bits (59), Expect = 1.6
Identities = 16/75 (21%), Positives = 33/75 (43%)
Query: 327 YPKQVKEWQDLNLKITDNFLENEFLPLDTIYFKDLEEEVTNLFNEDEINGTLIKSENYQA 386
Y K +K + FLE E + ++ +++ E+ N++ ++ ++
Sbjct: 193 YEKALKILKSFKNPPAIEFLEKEIEVIPELFILEVDNEMIVRLNDESYPTISLEENRFKD 252
Query: 387 LNSLKNRYKEAIDCI 401
+ LK + KEA D I
Sbjct: 253 SDYLKEKLKEAKDLI 267
>ref|NP_223004.1| PERIPLASMIC DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 27.3 bits (59), Expect = 1.6
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 123 FYKTKDLYYVKSETIYKDFCFELEDILFNFDASLLESKKY 162
F+ K +Y+ +++ K F +D+LF+F+ + ++K+Y
Sbjct: 107 FHLRKGVYFHQTKYWNKKVEFSAKDVLFSFERQMDKAKRY 146
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 26.9 bits (58), Expect = 2.1
Identities = 37/172 (21%), Positives = 65/172 (37%), Gaps = 26/172 (15%)
Query: 45 KAKSQYYQSKKQELEKLINLKCQNNNDLKEELFDKLYSFFKRYLSANGGIYFNDTPLYDS 104
K YY K +E+L+NL N D FD + + +YFN+ L
Sbjct: 63 KTSWDYYNEPKPLIERLVNL-APNYKD-----FDFILT------GGEPSLYFNNPILLSV 110
Query: 105 LYTKSDYEKCSLKKDTALFYKTKDLYYVKSETIYKDFCFELEDILFNFDASLLESKKYNE 164
L ++K L+ + +I+ +F L+++ F L S +
Sbjct: 111 L--------------EHFYHKKIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEQES 156
Query: 165 KVDLVFNLKDTDKKTNTLNFSVTLSSKGNQTKISEILKECFNQSVKLDEEIL 216
K + L++ +++F L S+ I+EI S+K +E L
Sbjct: 157 KRINLKALQNILNNAKSVHFKFVLESQNAAHSIAEIQSLLKQLSLKNNEIFL 208
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 26.9 bits (58), Expect = 2.1
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 607 DGSEVGYNLNGDAEIKQLFNGNKVFNNPKPEALLQRILEISTKENDLVLDF 657
DG ++ GD + L+ G P A++ I+EI+ K++ L+L F
Sbjct: 274 DGVMNAISVIGDKVGETLYYGAGAGGEPTASAVISDIIEIARKKSSLMLGF 324
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 26.6 bits (57), Expect = 2.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 5 EAQFYEVLENLFIGVKIEDKQESLLDPTPKAVKNGMLNLLKAKSQYYQSKKQELEK 60
E Q E+ +N VK+ DK ++LL K ++G N LK + K + EK
Sbjct: 506 EFQTIEIEKN----VKLTDKIQTLLKNVQKQKESGSKNALKELKNLHSKYKLQKEK 557
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 26.6 bits (57), Expect = 2.7
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 125 KTKDLYYVKSETIYKDFCFELEDILFNFDASLLESKK---YNEKVDLVFNLKD-TDKKTN 180
K KD+ + T+ F E + F+ + K Y +L+ N+KD + T
Sbjct: 234 KAKDIAQKATNTLI----FNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTL 289
Query: 181 TLNFSVTLSSKGNQTKISEILKECFNQSVKLDEEILKK 218
T NF+ S + K+ ++ + FN + + ILKK
Sbjct: 290 TKNFTNQKLSFAQKQKLCLLVLDSFNFDTQSKKSILKK 327
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 26.2 bits (56), Expect = 3.5
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 577 NNRIVFNGKNPMAKRYLSEVAEGRKSSTFWDGSEVGY 613
+N I F K P+ +E+ +G ++T W V Y
Sbjct: 177 HNEITFGLKFPVIPNKKTEIVDGLSATTLWQRLPVAY 213
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 26.2 bits (56), Expect = 3.5
Identities = 25/80 (31%), Positives = 32/80 (39%), Gaps = 3/80 (3%)
Query: 454 EQAYLKVLMDEVFNGGGGDNFVAS--ISWKQFHSVKNDAANFSKNIEYILCYCKNFSKNL 511
E Y V EV N G D I+ K V D A S IE I CK +S +
Sbjct: 93 ESGYTPVFA-EVKNDGNIDELALEKLITKKTKAIVSVDYAGKSVEIESIQRLCKKYSLSF 151
Query: 512 ISNEPFDKSNLYKLKDENGF 531
+S+ + Y+ K GF
Sbjct: 152 LSDSSHALGSEYQNKKVGGF 171
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 26.2 bits (56), Expect = 3.5
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 34/221 (15%)
Query: 199 EILKECFNQSVKLDEEILKKAFGKFKKQGSMDYFIHKNALGFLKEQLDLYLFEYLFKEMT 258
E + + FNQ L + + A K K+ G + FI +NAL L ++L L + ++
Sbjct: 1414 EGIDKIFNQG-NLANVLSQMAMEKIKQAGGLGNFI-ENALSPLSKELPASLQDETLGQLI 1471
Query: 259 AFD-----AKRLNEINTIKEVALEVVSLVSEF------ENELCKIWNKPRF----VLN-- 301
+ +N I+ + + +S+ F EN L K K +LN
Sbjct: 1472 GQNNLDDLLNNSGVMNEIQNIISQKLSIFGNFVTPSIIENYLAKQSLKSMLDDKGLLNFI 1531
Query: 302 SHFIVSLDQLKAKNYDLNKITNHPNYPKQVKEWQDLNLKITDNFLENEFLPLDTIYFKDL 361
+I + + L ITN P ++ ++ + N L NEFL D + K L
Sbjct: 1532 GGYIDASELSSILGVILKDITNPPTSLQK-------DIGVVANDLLNEFLGQDVV--KKL 1582
Query: 362 EEE------VTNLFNEDEINGTLIKSENYQALNSLKNRYKE 396
E + + N+ ++ ++G + SL+N KE
Sbjct: 1583 ESQGLVSNIINNVISQGGLSGVYNQGLGSVLPPSLQNALKE 1623
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 26.2 bits (56), Expect = 3.5
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 191 KGNQTKISEILKECFNQSVKLDEEILKKAFGKFKKQGSMDYFIHKNALG---FLKEQ 244
K +Q+K++ I+ N SVK EI+ GK +QG+ + + K L FLK+Q
Sbjct: 533 KKSQSKMALIITHRMN-SVKQANEIIVLDQGKLIEQGNFETLMKKQGLFCELFLKQQ 588
>ref|NP_222809.1| putative keto-acid dehydrogenase [Helicobacter pylori J99]
Length = 314
Score = 26.2 bits (56), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 117 KKDTALFYKTKDLYYVKSETIYKDF 141
+KD AL +TKDLYY + + F
Sbjct: 242 EKDLALILETKDLYYASDVFVKEPF 266
>ref|NP_222848.1| putative [Helicobacter pylori J99]
Length = 242
Score = 25.8 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 714 KVYELESYEEILRKIKYEDNDKPL 737
+VYEL + + ++KYED +PL
Sbjct: 107 RVYELSEFLDKKLQVKYEDKGEPL 130
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 25.8 bits (55), Expect = 4.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 302 SHFIVSLDQLKAKNYDLNKITNHPNYPKQVKEWQDLNLKITDNFLENE 349
+H + + ++K NKI + N +V++ D NL DN L+++
Sbjct: 326 NHLVGQIKEMKQDGASPNKIDSVVNKAMEVRDKLDNNLNQLDNDLKDQ 373
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 25.4 bits (54), Expect = 6.0
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 8/41 (19%)
Query: 56 QELEKLINLKCQNNNDL----KEELFDKLYSFFKRYLSANG 92
+E+E+L+ K ++NN L K+E+ +LY LS NG
Sbjct: 573 KEIERLLKQKIEDNNQLDMEEKKEIMGRLYVM----LSENG 609
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 25.4 bits (54), Expect = 6.0
Identities = 12/39 (30%), Positives = 18/39 (45%)
Query: 368 LFNEDEINGTLIKSENYQALNSLKNRYKEAIDCIYIDPP 406
LFN + N IK ++ + K +E D I +D P
Sbjct: 171 LFNGENFNDIEIKEYGFKTKQATKAHRQEGFDFIEVDSP 209
>ref|NP_223148.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 545
Score = 25.4 bits (54), Expect = 6.0
Identities = 22/85 (25%), Positives = 38/85 (43%), Gaps = 15/85 (17%)
Query: 383 NYQALNSLKNRYKEAIDCIYIDPPYNTQNNEFIYADNFKRSSWLSMMENRLELARKLLND 442
N + L ++ DCI+ +PP+ + N+ +NFK+ + L + L D
Sbjct: 188 NIMQKDFLSLKHAPQFDCIFTNPPWGKKYNQ-NQKENFKQ---------QFNLHQSL--D 235
Query: 443 KGAMFVSIDDN---EQAYLKVLMDE 464
++F N E AYL +L+ E
Sbjct: 236 SASLFFMASLNCLKENAYLGLLLPE 260
>ref|NP_222744.1| CITRATE SYNTHASE [Helicobacter pylori J99]
Length = 426
Score = 25.4 bits (54), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 524 KLKDENGFYKLDPVWAKSGNNFSPYTFLNGK 554
KL + GF+ DP ++ + S +++NGK
Sbjct: 32 KLFETTGFFSYDPGYSSTAGCQSKISYINGK 62
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 25.0 bits (53), Expect = 7.8
Identities = 36/157 (22%), Positives = 60/157 (37%), Gaps = 18/157 (11%)
Query: 41 LNLLKAKSQYYQSKKQELEKLINLKCQNNNDL-KEELFDKLYSFFKRYLSANGGIYFNDT 99
LN + Y S ++L++ LK QN N+ K EL K + K + + + +
Sbjct: 428 LNYEARSVEQYVSSPEKLDEYFELKTQNLNEAAKTELKKKWVNLQKVFSTKDRLEHIVQD 487
Query: 100 PLYDS--------------LYTKSDYEKCSLKKDTALFYKTKDLYYVKSETIYKDFCFEL 145
+ D L +S Y C + LF +T+ V T Y+ +L
Sbjct: 488 IVLDMAKLPRLSNGKGNAMLVAESVYNACRYFE---LFLETELKDKVAVITSYEPNIADL 544
Query: 146 EDILFNFDASLLESKKYNEKVDLVFNLKDTDKKTNTL 182
+D N + + Y + + FN KD K N +
Sbjct: 545 KDCGSNESEESYKYRAYCKMLQNFFNEKDEKKALNKI 581
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 25.0 bits (53), Expect = 7.8
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 1 MKTNEAQFYEVLENLFIGVKIEDKQESLLDPTPKAVKNGMLNLLKAKSQYYQSKKQELEK 60
+++ A +Y NL +G+ + +++ D + + K+ N + ++LE+
Sbjct: 145 IRSQIAVYYVNKSNLGMGIDVSKGEQAYSDLSFLSRKH--FNDFIKRVDTLSLSDEDLER 202
Query: 61 LINLKCQNNNDLKEELFDKLYSFFKRYLSANGGIY 95
+ K Q D +L + +Y K +LS + +Y
Sbjct: 203 IREKKNQEIEDCLMQLNNNIYDKEKNFLSEHNRVY 237
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 25.0 bits (53), Expect = 7.8
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 758 IEALEKMGVDIKETLENLWGVGVEFFNEKVVKFKGN 793
++ E+ G + +T N WG G + + + K +
Sbjct: 383 VQGGERRGTNPGQTTSNTWGAGCAYVGQTITNLKNS 418
>ref|NP_223632.1| putative [Helicobacter pylori J99]
Length = 411
Score = 25.0 bits (53), Expect = 7.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 11/45 (24%)
Query: 483 FHSVKNDAANFSKNI--------EYILCYCKNFSKN---LISNEP 516
F + +D N K + + +CYC+N S N LIS EP
Sbjct: 224 FQNEPSDTFNLKKTLLVLARAFSQAAICYCQNASANEVDLISTEP 268
>ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter
pylori J99]
Length = 326
Score = 25.0 bits (53), Expect = 7.8
Identities = 9/21 (42%), Positives = 16/21 (75%)
Query: 331 VKEWQDLNLKITDNFLENEFL 351
++EWQ++ L + ++FL NE L
Sbjct: 28 LEEWQEVCLNVKNHFLHNEEL 48
>ref|NP_222951.1| putative [Helicobacter pylori J99]
Length = 105
Score = 25.0 bits (53), Expect = 7.8
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 40 MLNLLKAKSQYYQSKKQELEKLINLKCQNNND-LKEELFDKLYSFFKRYLSANGGIYFND 98
M+N KA + Y K E+ + QN ND L +E D + +++ + D
Sbjct: 1 MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSA--MKMD 58
Query: 99 TPLYDSLYTKSDYEKCSLKKDT 120
PLY D S+ KDT
Sbjct: 59 NPLYPK--APGDEIYASMYKDT 78
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.136 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 992,136
Number of Sequences: 1491
Number of extensions: 54734
Number of successful extensions: 294
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 81
length of query: 809
length of database: 494,079
effective HSP length: 85
effective length of query: 724
effective length of database: 367,344
effective search space: 265957056
effective search space used: 265957056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)