BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645986|ref|NP_208167.1| (3R)-hydroxymyristoyl-(acyl
carrier protein) dehydratase (fabZ) [Helicobacter pylori 26695]
         (159 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224008.1|  HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHY...   321  7e-90
ref|NP_223467.1|  putative [Helicobacter pylori J99]               25  1.3
ref|NP_222903.1|  UDP-3-O-[3-hydroxymyristoyl [Helicobacter ...    24  1.7
ref|NP_222852.1|  putative [Helicobacter pylori J99]               24  2.2
ref|NP_223589.1|  proline/betaine transporter [Helicobacter ...    23  3.8
ref|NP_223001.1|  putative FLAGELLAR-HOOK ASSOCIATED PROTEIN...    23  5.0
ref|NP_223674.1|  putative [Helicobacter pylori J99]               22  8.5
ref|NP_223274.1|  putative vacuolating cytotoxin (VacA) para...    22  8.5

>ref|NP_224008.1| HYDROXYMYRISTOYL-ACYL CARRIER PROTEIN DEHYDRATASE [Helicobacter
           pylori J99]
          Length = 159

 Score =  321 bits (822), Expect = 7e-90
 Identities = 157/159 (98%), Positives = 159/159 (99%)

Query: 1   MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNEDVFNGHFP 60
           MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQAN+KIVAYKNITFNEDVFNGHFP
Sbjct: 1   MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFP 60

Query: 61  NKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLE 120
           NKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLE
Sbjct: 61  NKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLE 120

Query: 121 YHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERD 159
           YHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER+
Sbjct: 121 YHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE 159



>ref|NP_223467.1| putative [Helicobacter pylori J99]
          Length = 205

 Score = 24.6 bits (52), Expect = 1.3
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 10/83 (12%)

Query: 58  HFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFD-----PEIAKTKIVYFMTIDKVKFRIP 112
           HFP       ++ +EG+  +G F+ + S+  +D      +  K  ++ F  +D  K  I 
Sbjct: 121 HFPGHTPGCSIIEIEGVIFSGDFIFYRSIGRYDFPYSNEKDMKESLLRFQNLDFPK-DIE 179

Query: 113 VTP--GDRLEYHLEVLKHKGMIW 133
           + P  GD+  +  E  +    IW
Sbjct: 180 IYPGHGDKTSFFAE--REHSKIW 200



>ref|NP_222903.1| UDP-3-O-[3-hydroxymyristoyl [Helicobacter pylori J99]
          Length = 336

 Score = 24.3 bits (51), Expect = 1.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 40  KKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGM 74
           +K+    N+   E V  G   N  I+PGV+I +G+
Sbjct: 107 EKVTIMPNVVIGEGVEIGE--NSLIYPGVVIADGV 139



>ref|NP_222852.1| putative [Helicobacter pylori J99]
          Length = 482

 Score = 23.9 bits (50), Expect = 2.2
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 33  IIELQANKKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAF 83
           ++ L A  KIV+Y++I  N+  FN       +   +L + G  +  GFL F
Sbjct: 306 VMVLMAFCKIVSYEDIIKNKSAFNIFL----LLGSLLTMAGGLKNVGFLNF 352



>ref|NP_223589.1| proline/betaine transporter [Helicobacter pylori J99]
          Length = 452

 Score = 23.1 bits (48), Expect = 3.8
 Identities = 16/51 (31%), Positives = 24/51 (46%), Gaps = 3/51 (5%)

Query: 54  VFNGHFPNKPIFPGVLIVEGMAQTG--GFLAFTSLWGFDPEIAKTKIVYFM 102
           +F G   +K I P  + +   A  G  GFL F   +   P +  T I+YF+
Sbjct: 302 IFTGFLADK-IKPHKVCMAFSAAFGFFGFLFFKEFYSNAPSLVNTIILYFL 351



>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
           pylori J99]
          Length = 828

 Score = 22.7 bits (47), Expect = 5.0
 Identities = 11/59 (18%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 1   MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANK-KIVAYKNITFNEDVFNGH 58
           +++++QN +S   +  +L  + H Y     ++++++  N    +  KN+T   +  + H
Sbjct: 263 LDKAYQNQESATKVSDLLDKIGHAYGNTSQNKVVDVSLNNWGQIEIKNLTPGSENLDFH 321



>ref|NP_223674.1| putative [Helicobacter pylori J99]
          Length = 200

 Score = 21.9 bits (45), Expect = 8.5
 Identities = 14/38 (36%), Positives = 17/38 (43%), Gaps = 6/38 (15%)

Query: 15  EHILQILPHRYPMLLVDRIIELQANKKIVAYKNITFNE 52
           E +L  L  RY      RI+EL     I A+KN    E
Sbjct: 167 EKLLDFLIARY------RIVELVGENAIKAFKNALLKE 198



>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
           J99]
          Length = 3194

 Score = 21.9 bits (45), Expect = 8.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 39  NKKIVAYKNITFNEDVFNG 57
           N  I+   NITFN   FNG
Sbjct: 318 NAYILNANNITFNNLTFNG 336



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.324    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,800
Number of Sequences: 1491
Number of extensions: 6678
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 494,079
effective HSP length: 71
effective length of query: 88
effective length of database: 388,218
effective search space: 34163184
effective search space used: 34163184
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)