BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645987|ref|NP_208168.1| hypothetical protein
[Helicobacter pylori 26695]
(146 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224009.1| putative [Helicobacter pylori J99] 248 6e-68
ref|NP_223798.1| putative [Helicobacter pylori J99] 98 1e-22
ref|NP_223106.1| putative proline peptidase [Helicobacter p... 28 0.13
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 27 0.30
ref|NP_223155.1| putative [Helicobacter pylori J99] 27 0.30
ref|NP_223621.1| putative cation efflux system protein [Hel... 24 1.5
ref|NP_223815.1| AMINO ACID ABC TRANSPORTER, ATP-BINDING PR... 23 2.5
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 23 3.3
ref|NP_223416.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223220.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 23 4.3
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 23 4.3
ref|NP_223681.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223252.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_223159.1| putative [Helicobacter pylori J99] 22 5.6
ref|NP_224201.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 9.6
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 9.6
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 22 9.6
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 22 9.6
>ref|NP_224009.1| putative [Helicobacter pylori J99]
Length = 129
Score = 248 bits (632), Expect = 6e-68
Identities = 125/129 (96%), Positives = 126/129 (96%)
Query: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVSFTLVNPFALRKYEFEVPTPL 77
MIFDVKAPILGFETIHKM LQKIDEIFLRLNS E+NSVVSFTLVNPFALRKYEFEVPTPL
Sbjct: 1 MIFDVKAPILGFETIHKMHLQKIDEIFLRLNSAEDNSVVSFTLVNPFALRKYEFEVPTPL 60
Query: 78 KILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHLR 137
KILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDS KYPHYHLR
Sbjct: 61 KILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSKKYPHYHLR 120
Query: 138 ENILSHTHE 146
ENILSHTHE
Sbjct: 121 ENILSHTHE 129
>ref|NP_223798.1| putative [Helicobacter pylori J99]
Length = 135
Score = 97.8 bits (242), Expect = 1e-22
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 18 MIFDVKAPILGFETIHKMRLQKIDEIFLRL-NSTEENSVVSFTLVNPFALRKYEFEVPTP 76
M + +KAPILGFE I+++RL+KID +F RL T + LVNP+ LR+Y F +P
Sbjct: 1 MNYFLKAPILGFEHINEVRLEKIDSLFSRLMGQTNSPMALDMVLVNPYCLREYSFVIPKY 60
Query: 77 LKILLELEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHL 136
+++LLEL+ V V ++V+Q +E S VN+LAPL+FN QV L YP +
Sbjct: 61 IELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDYPDFGF 120
Query: 137 RENILS 142
R+ + S
Sbjct: 121 RDPLKS 126
>ref|NP_223106.1| putative proline peptidase [Helicobacter pylori J99]
Length = 357
Score = 27.7 bits (60), Expect = 0.13
Identities = 24/78 (30%), Positives = 38/78 (47%), Gaps = 16/78 (20%)
Query: 83 LEGAKSVLVANIM---VVQTPIELSTVNYLAPLIFN-----------LDKQLMGQVVLDS 128
L+ K VLV I +VQ+ I+L T + + L F+ LD + +VVL+
Sbjct: 53 LQPKKGVLVEVIESSDLVQSAIDLITKSSVKKLFFDPNQVNLQTYKRLDSAVGNKVVLEG 112
Query: 129 NKYPHYHLRENILSHTHE 146
P YH ++ I+ + HE
Sbjct: 113 --VPSYHRQKRIIKNEHE 128
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 26.6 bits (57), Expect = 0.30
Identities = 12/55 (21%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Query: 12 KGMQSPMIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEEN---SVVSFTLVNP 63
K P++F++ I+ +++ +++ +++R+NS ++N SV+ NP
Sbjct: 181 KNEPKPLVFNIVRDIIKIPSVYVKKIKDTPYLYVRVNSFDKNVTKSVLDGLKANP 235
>ref|NP_223155.1| putative [Helicobacter pylori J99]
Length = 314
Score = 26.6 bits (57), Expect = 0.30
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 27 LGFETIHKMRLQKIDEIFLRLNSTEENSVVSFT---------LVNPFALRKYEFEVP 74
LGF H++ ++I +IF +LN+ E ++ T L NP A + + EVP
Sbjct: 14 LGFLKAHEVSAEEIADIFYKLNAKEPKMKINHTKGFCAKGVFLPNPQA--REDLEVP 68
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 24.3 bits (51), Expect = 1.5
Identities = 17/70 (24%), Positives = 35/70 (49%), Gaps = 3/70 (4%)
Query: 74 PTPLKILLELEGAKSVLVANIMVVQTPIELSTVNYLA-PLIFNLDKQLMGQVVLDSNKYP 132
PT +KI+L+L G+ + N +V P+EL + + ++ K + + +D +
Sbjct: 44 PTQVKIILKLPGSSPEEMENNIV--RPLELELLGLKGQKSLRSISKYSISDITIDFDDSV 101
Query: 133 HYHLRENILS 142
+L NI++
Sbjct: 102 DIYLARNIVN 111
>ref|NP_223815.1| AMINO ACID ABC TRANSPORTER, ATP-BINDING PROTEIN [Helicobacter
pylori J99]
Length = 248
Score = 23.5 bits (49), Expect = 2.5
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 83 LEGAKSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHLRENIL 141
L G + + I+ T + + N+ N +Q +G V + +PH ++ +NIL
Sbjct: 50 LNGLEKIDEGEILFENTNLNTPSTNW------NQMRQKIGMVFQNYELFPHLNVLDNIL 102
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 23.1 bits (48), Expect = 3.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 7 FCAFLKGMQSPMI 19
FCAFL G QS ++
Sbjct: 527 FCAFLNGFQSALV 539
>ref|NP_223416.1| putative [Helicobacter pylori J99]
Length = 200
Score = 23.1 bits (48), Expect = 3.3
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 95 MVVQTPIELSTVNYLAPLIFNLDKQLM--GQVVLDSNKYPHYHLRENI 140
+V+ EL+ N + ++++ L ++V+ +NK HY R N+
Sbjct: 127 LVIFVSRELALANGILTDAYDIEANLYMNARIVMKNNKRKHYEQRVNL 174
>ref|NP_223220.1| putative [Helicobacter pylori J99]
Length = 273
Score = 23.1 bits (48), Expect = 3.3
Identities = 26/106 (24%), Positives = 45/106 (41%), Gaps = 18/106 (16%)
Query: 39 KIDEIFLRLNSTEENSVVSFTLVNPFALRKYEFEVPTPLKILLELEGAKSVLVANIMVVQ 98
++D + L LN+ +EN ++SF F+ P+ LKI + A S +A +
Sbjct: 55 RLDSLKL-LNTLKENGLLSF-----------NFDKPSVLKITFK---ASSNPLAFAKSIN 99
Query: 99 TPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYHLRENILSHT 144
+ + +Y+ P+ + G+ V Y L NIL T
Sbjct: 100 NSLNMMGYSYVLPIRM---QSSSGENVFSYELKTEYVLDPNILIET 142
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 22.7 bits (47), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 4/36 (11%)
Query: 26 ILGFETIHKMRLQKIDEI----FLRLNSTEENSVVS 57
+LGFET K+ L+ +EI + RL ++E V S
Sbjct: 321 MLGFETPQKLPLKPKEEIQCAYYARLLVSDEKGVFS 356
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 22.7 bits (47), Expect = 4.3
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 34 KMRLQKIDEIFLRLNSTEENSVVS----------FTLVNPFALRKY 69
K+ LQ+I + F++LN ++ ++++ F L+ PF + Y
Sbjct: 4 KVLLQRIVDFFIKLNKKQKIALIAAGVLITALLVFLLLYPFKEKDY 49
>ref|NP_223681.1| putative [Helicobacter pylori J99]
Length = 142
Score = 22.3 bits (46), Expect = 5.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 104 STVNYLAPLIFNLDKQLMGQVVLDSNK 130
+ +N+ APL N + + QV+ D K
Sbjct: 79 NNINFYAPLELNQEALIKAQVIQDGVK 105
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 22.3 bits (46), Expect = 5.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 39 KIDEIFLRLNSTE--------ENSVVSFTLVNP 63
KID ++ N T ENSVV TL+ P
Sbjct: 241 KIDNALIKANFTPSEFIPSLLENSVVKATLIKP 273
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 22.3 bits (46), Expect = 5.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 66 LRKYEFEVPTPLKILLELEGAKSVLVANIMVVQTP 100
++K E ++ ++LLE E KSV N M+ P
Sbjct: 128 IKKLENQLIEETRMLLEQETQKSVKAYNAMMGHQP 162
>ref|NP_224201.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 90
Score = 21.6 bits (44), Expect = 9.6
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 16 SPMIFDVKAPILGFETIHKMRLQKIDEIFLRLNSTEENSVVS 57
+PM+ D + I + + + ++FL LNS E N+ +S
Sbjct: 48 NPMLVDSLLKVELDCAIPEELYESVVQVFLWLNSVENNAQMS 89
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.6 bits (44), Expect = 9.6
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 7/52 (13%)
Query: 34 KMRLQKIDEIFLRLNSTEENSVVSFTLVNPFALRKYEFEVPTPLKILLELEG 85
K +L+K+++ L+LN EN V + A + + LK LLE EG
Sbjct: 816 KKQLEKLEKEKLKLNLHNENFVKN-------APKSVLEKARESLKTLLEKEG 860
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 21.6 bits (44), Expect = 9.6
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 35 MRLQKIDEIFLRLNSTEENSVVSFTLVN---PFALRKYEFEVPTPLKILLELEGAKS 88
M +QK++ I + ++N V + V+ + KY FEV + ++L + A++
Sbjct: 167 MYVQKVENILEIEWAKKDNESVRYAQVHLESEYEFSKYHFEVASVERLLEMFKNAQA 223
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 21.6 bits (44), Expect = 9.6
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Query: 68 KYEFEVPTPL--KILLELEGAKSVLVANIMVVQTPIELSTVNYLAP 111
+ F V T + K++L+ +GA+S+L M+ P V AP
Sbjct: 696 RVSFRVGTKIDSKVILDTDGAQSLLGRGDMLFTPPGTNGLVRLHAP 741
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.140 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,149
Number of Sequences: 1491
Number of extensions: 5721
Number of successful extensions: 35
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 19
length of query: 146
length of database: 494,079
effective HSP length: 70
effective length of query: 76
effective length of database: 389,709
effective search space: 29617884
effective search space used: 29617884
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 44 (21.6 bits)