BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645991|ref|NP_208172.1| hypothetical protein
[Helicobacter pylori 26695]
(77 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223968.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 23 1.4
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 22 3.2
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 21 4.2
ref|NP_223828.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helic... 21 5.5
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 20 7.2
ref|NP_223040.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99] 20 9.4
ref|NP_223475.1| putative osmoprotection binding protein [H... 20 9.4
>ref|NP_223968.1| putative [Helicobacter pylori J99]
Length = 118
Score = 23.1 bits (48), Expect = 1.1
Identities = 7/27 (25%), Positives = 19/27 (69%)
Query: 44 VFAIIVIIISSHFSNAYKTLIASNKKP 70
+ ++VIII+++F+ + ++ ++K P
Sbjct: 6 ILILLVIIITTYFTRIWPFMVFNSKNP 32
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 22.7 bits (47), Expect = 1.4
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 17 LFHMDSMDLPSNQQTTIRDYLKPGSIVVFAIIVIIIS 53
L H+D+ D ++ G + FA+++I++S
Sbjct: 413 LQHIDTRDNTQRVNAIMQGVKHVGGAIFFALMIIVVS 449
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 29 QQTTIRDYLKPGSIVVFAIIVIIISSHFSNAYKTLIASNKKPVL 72
+ ++DYLKP + ++ +I YK +AS + L
Sbjct: 355 EPNALKDYLKPEELKLYTLI-----------YKRFLASQMQDAL 387
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 21.2 bits (43), Expect = 4.2
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 33 IRDYLKPGSIVVFAIIVIIISSHFSNAYKTLIASNKKPVLSHLE 76
+ DY++ + F + + ++ A++TL+ NK+ VL +L+
Sbjct: 222 VSDYIERHHLAHFLAMNLEVAL---KAFETLLPCNKQEVLKNLK 262
>ref|NP_223828.1| putative [Helicobacter pylori J99]
Length = 391
Score = 21.2 bits (43), Expect = 4.2
Identities = 5/20 (25%), Positives = 15/20 (75%)
Query: 38 KPGSIVVFAIIVIIISSHFS 57
+P + ++ +++++IS HF+
Sbjct: 209 RPLLVGIYLLVIMVISGHFT 228
>ref|NP_224082.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 406
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 52 ISSHFSNAYKTLIASNKKPVLSHL 75
I+S ++ + TL+ + K+P+LS L
Sbjct: 307 INSRIAHYFTTLLNALKRPLLSVL 330
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 20.4 bits (41), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (47%)
Query: 41 SIVVFAIIVIIISSHFSNAYKTLIASNKK 69
S++ I + H +AY TLIA K
Sbjct: 4 SLITTPIYYVNDIPHIGHAYTTLIADTLK 32
>ref|NP_223040.1| putative [Helicobacter pylori J99]
Length = 293
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (49%)
Query: 19 HMDSMDLPSNQQTTIRDYLKPGSI 42
H+D L NQQT + + G +
Sbjct: 34 HLDKQRLKQNQQTVRKSQIIQGVV 57
>ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 15 YRLFHMDSMDLPSNQQTTI 33
Y+LF + ++LPS +TT+
Sbjct: 260 YKLFEICLLNLPSYIKTTM 278
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 20.0 bits (40), Expect = 9.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 41 SIVVFAIIVIIISSHFSNAYKTLIASNKKPVL 72
S+ +FA+ + +I NA L+ P++
Sbjct: 104 SLALFALFIPVIGVGLKNALLVLVLYGLLPIV 135
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.139 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,768
Number of Sequences: 1491
Number of extensions: 2351
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 77
length of database: 494,079
effective HSP length: 53
effective length of query: 24
effective length of database: 415,056
effective search space: 9961344
effective search space used: 9961344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)