BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645992|ref|NP_208173.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 263 9e-73
ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 28 0.11
ref|NP_222872.1| putative histidine kinase sensor protein [... 27 0.14
ref|NP_223180.1| putative [Helicobacter pylori J99] 27 0.19
ref|NP_222827.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pyl... 25 0.93
ref|NP_222895.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223731.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223578.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFER... 23 2.7
ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE P... 23 3.5
ref|NP_223830.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223679.1| arginine decarboxylase [Helicobacter pylor... 22 4.6
ref|NP_223270.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 6.0
ref|NP_223667.1| putative [Helicobacter pylori J99] 22 6.0
ref|NP_223614.1| putative [Helicobacter pylori J99] 22 6.0
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 22 6.0
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 7.9
ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicoba... 22 7.9
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 263 bits (673), Expect = 9e-73
Identities = 125/130 (96%), Positives = 128/130 (98%)
Query: 1 MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAIPSGFW 60
MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGY+TFSSKNIAIPSGFW
Sbjct: 158 MTNITPEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGYRTFSSKNIAIPSGFW 217
Query: 61 YHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNEL 120
YHYDTSLTDSYENAKSECFYIPNDNQ YPLQEMRRDCKEYERVEKQVVFKNNKN ELNEL
Sbjct: 218 YHYDTSLTDSYENAKSECFYIPNDNQKYPLQEMRRDCKEYERVEKQVVFKNNKNAELNEL 277
Query: 121 PKYLNNAKKY 130
PKY+NN+KKY
Sbjct: 278 PKYMNNSKKY 287
>ref|NP_223668.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 357
Score = 27.7 bits (60), Expect = 0.11
Identities = 21/65 (32%), Positives = 28/65 (42%), Gaps = 5/65 (7%)
Query: 51 KNIAIPSGFWYHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFK 110
KNIA+ + HY L +N K YI + PL D K + + + VFK
Sbjct: 207 KNIALENN---HY--RLLIKGKNNKERYAYIEKEFLQVPLNAWLSDTKRLKSFKGRFVFK 261
Query: 111 NNKNN 115
KNN
Sbjct: 262 KAKNN 266
>ref|NP_222872.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 442
Score = 27.3 bits (59), Expect = 0.14
Identities = 11/38 (28%), Positives = 22/38 (56%)
Query: 89 PLQEMRRDCKEYERVEKQVVFKNNKNNELNELPKYLNN 126
PL+E+R K + + +K V K+ + +E+ +L +N
Sbjct: 156 PLRELRSQVKRFAQGDKSVSCKSKQKDEIGDLANEFDN 193
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 26.9 bits (58), Expect = 0.19
Identities = 18/76 (23%), Positives = 33/76 (42%), Gaps = 2/76 (2%)
Query: 51 KNIAIPSGFWYHYDTSLTDSYENAKSE--CFYIPNDNQNYPLQEMRRDCKEYERVEKQVV 108
+N + + F HY T T N K F + ++++ +D ++Y Q+
Sbjct: 243 QNETLFNRFVRHYLTIKTGKIPNIKKVYGAFKDYQQKEGIEIEDLLKDLQKYCGYFCQIA 302
Query: 109 FKNNKNNELNELPKYL 124
FK N +LN+ +L
Sbjct: 303 FKKEANKDLNKALSFL 318
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 25.4 bits (54), Expect = 0.55
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 72 ENAKSECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNELPKYL 124
EN K E F + ND+ N+ L + + +E+ + KN+E++ L YL
Sbjct: 27 ENKKYEVF-LGNDSANFNLLDKETNTPLFEKSPLDSSLELYKNSEIHMLYPYL 78
>ref|NP_222834.1| THREONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 612
Score = 24.6 bits (52), Expect = 0.93
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 22 EGRNLARKYHQVLVEELTIIKQGYKTFSSKNIAIPSGFWYHYDTSLTDSYENAKSECFYI 81
+G L ++ +L + L + +GY+ I + S W ++ Y+N K ++
Sbjct: 245 KGARLRKRIEDLLSQALLL--RGYEPVKGPEI-LKSDVW-----KISGHYDNYKENMYFT 296
Query: 82 PNDNQNYPLQEM 93
D Q Y ++ M
Sbjct: 297 TIDEQEYGIKPM 308
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 23.5 bits (49), Expect = 2.1
Identities = 13/42 (30%), Positives = 18/42 (41%)
Query: 59 FWYHYDTSLTDSYENAKSECFYIPNDNQNYPLQEMRRDCKEY 100
F HY TS ++YE K+E I +Q D K +
Sbjct: 279 FLGHYRTSTDNTYEKLKAELKEIKKSKLKSFIQSYVSDLKNF 320
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 23.1 bits (48), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 104 EKQVVFKNNKNNELNELPKYLNNAKKY 130
+KQ+ N+ N E N L K NA+K+
Sbjct: 156 KKQLAETNHLNKEYNTLDKTRLNAQKF 182
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.1 bits (48), Expect = 2.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 7 EAKNTNRHSVLLVEKEGRN---LARKYHQVLVEELTIIKQGYKTFSSKN 52
E NT H+V+ V K G + + + + Q+L + I + GY KN
Sbjct: 37 EFSNTGEHAVIQVRKSGLSTLEMLQIFSQIL--GVKIAELGYAGLKDKN 83
>ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE [Helicobacter pylori
J99]
Length = 328
Score = 23.1 bits (48), Expect = 2.7
Identities = 12/45 (26%), Positives = 19/45 (41%)
Query: 34 LVEELTIIKQGYKTFSSKNIAIPSGFWYHYDTSLTDSYENAKSEC 78
L+ E + K K + + + G+W T+L YEN C
Sbjct: 125 LINEENVWKSLNKEGQAITLCMHFGYWEAVGTTLAQYYENYGRGC 169
>ref|NP_223772.1| putative TONB-INDEPENDENT PROTEIN-UPTAKE PROTEIN [Helicobacter
pylori J99]
Length = 417
Score = 22.7 bits (47), Expect = 3.5
Identities = 10/24 (41%), Positives = 15/24 (61%), Gaps = 4/24 (16%)
Query: 102 RVEKQVVFKNNKNNELNELPKYLN 125
R +K+++ KNN LN PK+ N
Sbjct: 175 RYQKEII----KNNRLNIFPKWAN 194
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 22.3 bits (46), Expect = 4.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 6 PEAKNTNRHSVLLVEKEGRNLARKYHQVLVEELTIIKQGY 45
P+A + S+LLV+K +++++ V E + K GY
Sbjct: 338 PQAHLSTSQSLLLVQKIFADVSKEIKVVANTEKKVEKAGY 377
>ref|NP_223679.1| arginine decarboxylase [Helicobacter pylori J99]
Length = 615
Score = 22.3 bits (46), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 90 LQEMRRDCKEYERVEKQVVFKNNK 113
L ++ D KE ER+ KQ + NN+
Sbjct: 565 LDDLDYDTKEIERLLKQKIEDNNQ 588
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 22.3 bits (46), Expect = 4.6
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 76 SECFYIPNDNQNYPLQEMRRDCKEYERVEKQVVFKNNKNNELNELPKYLNNAKK 129
++ ++P N +Y + RD EY+ Q + N N +NN K+
Sbjct: 117 AKAMFLPTLNASYNFKNEARDTPEYKHYNTQQLQAQVTLNVFNGFSN-VNNVKE 169
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 21.9 bits (45), Expect = 6.0
Identities = 10/28 (35%), Positives = 13/28 (45%)
Query: 61 YHYDTSLTDSYENAKSECFYIPNDNQNY 88
Y Y L + +SEC I ND + Y
Sbjct: 257 YRYFKKLKNEIPTLESECEEIENDLKRY 284
>ref|NP_223667.1| putative [Helicobacter pylori J99]
Length = 227
Score = 21.9 bits (45), Expect = 6.0
Identities = 11/29 (37%), Positives = 14/29 (47%)
Query: 94 RRDCKEYERVEKQVVFKNNKNNELNELPK 122
R + K Y K +F NNK N L+ K
Sbjct: 119 RINFKSYYPNNKNALFINNKKNPLSSASK 147
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 21.9 bits (45), Expect = 6.0
Identities = 11/37 (29%), Positives = 18/37 (47%)
Query: 90 LQEMRRDCKEYERVEKQVVFKNNKNNELNELPKYLNN 126
+QE RDC +Y+ Q+ + L EL + +N
Sbjct: 74 IQEEYRDCIDYDNKLLQLHYSLENLQTLRELKEEADN 110
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 21.9 bits (45), Expect = 6.0
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 111 NNKNNELNELPKYLNNAKKY 130
N EL E+ YL N KKY
Sbjct: 168 NEVKEELLEVIDYLKNPKKY 187
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 21.6 bits (44), Expect = 7.9
Identities = 17/56 (30%), Positives = 28/56 (49%), Gaps = 5/56 (8%)
Query: 79 FYIPND---NQNYPLQEM--RRDCKEYERVEKQVVFKNNKNNELNELPKYLNNAKK 129
F+I ND +++ P+ +R C +E + KN+K + KYLNN K+
Sbjct: 111 FWILNDIVWHKSNPVPNFAGKRLCNAHETLIWCAKHKNSKVTFNYKTMKYLNNDKQ 166
>ref|NP_223316.1| NONHEME IRON-CONTAINING FERRITIN [Helicobacter pylori J99]
Length = 167
Score = 21.6 bits (44), Expect = 7.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 98 KEYERVEKQVVFKNNKN 114
+EYE +K ++F N N
Sbjct: 49 EEYEHAKKLIIFLNENN 65
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.130 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,621
Number of Sequences: 1491
Number of extensions: 7200
Number of successful extensions: 29
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 20
length of query: 130
length of database: 494,079
effective HSP length: 68
effective length of query: 62
effective length of database: 392,691
effective search space: 24346842
effective search space used: 24346842
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 44 (21.6 bits)