BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645994|ref|NP_208175.1| hypothetical protein
[Helicobacter pylori 26695]
(68 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224159.1| putative [Helicobacter pylori J99] 129 1e-32
ref|NP_223386.1| putative [Helicobacter pylori J99] 23 0.88
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 22 2.6
ref|NP_224101.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 21 4.4
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 21 5.7
ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99] 21 5.7
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 20 7.4
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 20 9.7
ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobact... 20 9.7
>ref|NP_224159.1| putative [Helicobacter pylori J99]
Length = 67
Score = 129 bits (323), Expect = 1e-32
Identities = 62/67 (92%), Positives = 63/67 (93%)
Query: 2 MQNSVKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLGE 61
MQNS KKLEYEERFN ALLKLQACQEEKQV SCLKCE+VLNCKIRNSYVDAAYESMSLGE
Sbjct: 1 MQNSTKKLEYEERFNAALLKLQACQEEKQVASCLKCEKVLNCKIRNSYVDAAYESMSLGE 60
Query: 62 RGGFDFN 68
GGFDFN
Sbjct: 61 AGGFDFN 67
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 23.5 bits (49), Expect = 0.88
Identities = 11/31 (35%), Positives = 18/31 (57%)
Query: 35 LKCEQVLNCKIRNSYVDAAYESMSLGERGGF 65
+K E+ L KIRN+ + A + + + GGF
Sbjct: 35 IKVEESLKDKIRNAMENVAGQKLKVALVGGF 65
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 265
Score = 21.9 bits (45), Expect = 2.6
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 50 VDAAYESMSLGERGGFDFN 68
+ A ++ LG RG FD N
Sbjct: 2 IKARFKKRLLGSRGAFDLN 20
>ref|NP_224101.1| putative [Helicobacter pylori J99]
Length = 441
Score = 21.6 bits (44), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 1 MMQNSVKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQV 40
+ Q V KLE + +L L++ +E + +CEQV
Sbjct: 350 LKQEGVNKLEEGVFELEGMLDLESVEEVLHIQFDKECEQV 389
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 21.2 bits (43), Expect = 4.4
Identities = 9/27 (33%), Positives = 16/27 (58%)
Query: 4 NSVKKLEYEERFNDALLKLQACQEEKQ 30
N KKL+ ++RFN+ + L + + Q
Sbjct: 537 NEFKKLQAQKRFNEKMDLLSSLAKNYQ 563
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 20.8 bits (42), Expect = 5.7
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 44 KIRNSYVDAAYESMSLGE 61
K++N Y+ AY M L E
Sbjct: 771 KLKNLYIKTAYNYMPLRE 788
>ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 378
Score = 20.8 bits (42), Expect = 5.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 4 NSVKKLEYEERFNDALLKLQA 24
NS+ L+ + FND KLQA
Sbjct: 190 NSIATLKLIKAFNDLGAKLQA 210
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 20.4 bits (41), Expect = 7.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 3 QNSVKKLEYEERFNDAL 19
QN++K L ++ FN+AL
Sbjct: 195 QNALKNLLKDDDFNEAL 211
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 20.0 bits (40), Expect = 9.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 26 QEEKQVTSCLKCEQVL 41
+ E + T C +CE+VL
Sbjct: 902 KSELENTPCKRCEEVL 917
>ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 765
Score = 20.0 bits (40), Expect = 9.7
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 4 NSVKKLEYEER 14
N +KKLE++ER
Sbjct: 29 NGLKKLEFKER 39
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,689
Number of Sequences: 1491
Number of extensions: 2160
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 68
length of database: 494,079
effective HSP length: 44
effective length of query: 24
effective length of database: 428,475
effective search space: 10283400
effective search space used: 10283400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)