BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645998|ref|NP_208179.1| hypothetical protein
[Helicobacter pylori 26695]
(149 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223830.1| putative [Helicobacter pylori J99] 37 3e-04
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 33 0.003
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 33 0.004
ref|NP_223610.1| putative [Helicobacter pylori J99] 32 0.007
ref|NP_223025.1| putative [Helicobacter pylori J99] 31 0.016
ref|NP_223176.1| putative [Helicobacter pylori J99] 30 0.028
ref|NP_223265.1| putative secretion/efflux abc transporter,... 28 0.082
ref|NP_223787.1| putative [Helicobacter pylori J99] 28 0.11
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 27 0.24
ref|NP_223415.1| putative [Helicobacter pylori J99] 27 0.24
ref|NP_223889.1| putative [Helicobacter pylori J99] 26 0.41
ref|NP_223773.1| putative [Helicobacter pylori J99] 26 0.41
ref|NP_223642.1| putative [Helicobacter pylori J99] 26 0.41
ref|NP_223180.1| putative [Helicobacter pylori J99] 26 0.41
ref|NP_224199.1| putative [Helicobacter pylori J99] 25 0.90
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 25 0.90
ref|NP_222894.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_222831.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_222839.1| putative [Helicobacter pylori J99] 24 1.5
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 24 2.0
ref|NP_223915.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223790.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_223515.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 23 2.6
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_224048.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 23 3.4
ref|NP_223090.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223038.1| putative [Helicobacter pylori J99] 23 3.4
ref|NP_223651.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_222961.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 22 5.8
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 22 5.8
ref|NP_223886.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223644.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99] 22 5.8
ref|NP_223013.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter py... 22 7.6
ref|NP_223459.1| putative lipopolysaccharide biosynthesis p... 22 7.6
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 22 10.0
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 22 10.0
ref|NP_223322.1| putative [Helicobacter pylori J99] 22 10.0
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 22 10.0
ref|NP_223035.1| putative [Helicobacter pylori J99] 22 10.0
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 36.6 bits (83), Expect = 3e-04
Identities = 30/108 (27%), Positives = 49/108 (44%), Gaps = 5/108 (4%)
Query: 29 KSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCK 88
K EN S I L++ E K + +EK E+ +QK EQEK+ E ++ E K
Sbjct: 108 KEAENARDRANKSGIELEQEEQKTE----QEKQKTEQEKQKTEQEKQKTEQEKQKTEQEK 163
Query: 89 QQNRVLKKFDSTNFSFECDEPATKKPLENPT-NNILNSNHQNTQLQNN 135
Q+ ++ + E + +K N T +++N QN Q +N
Sbjct: 164 QKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHN 211
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 33.1 bits (74), Expect = 0.003
Identities = 27/82 (32%), Positives = 44/82 (52%), Gaps = 2/82 (2%)
Query: 16 ELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILRE-KNLKEERRQKEEQEK 74
++E E + S+ +S++ K+ + KE+ KR EIL+E +LKEE+ Q E Q +
Sbjct: 401 QMESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFE 460
Query: 75 KSQENFQKFLEFCKQQNRVLKK 96
+E F K + K + LKK
Sbjct: 461 NEKEVF-KEISRLKMEMEGLKK 481
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 32.7 bits (73), Expect = 0.004
Identities = 27/88 (30%), Positives = 40/88 (44%), Gaps = 14/88 (15%)
Query: 60 KNLKEERRQKEEQEKKSQENFQK---FLEFCKQQNRVLKKFDSTNFSFECDEPATKKPLE 116
KNL+ + K + E KSQ N QK F K+ NR D+ ++ + K+ L
Sbjct: 634 KNLESKSGNKNKMEAKSQANSQKDEIFALINKEANR-----DARAIAYAQNLKGIKRELS 688
Query: 117 NPTNNILNSNHQNTQLQNNTKMFDYFDN 144
+ NI N L++ +K FD F N
Sbjct: 689 DKLENI------NKDLKDFSKSFDEFKN 710
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 32.0 bits (71), Expect = 0.007
Identities = 18/59 (30%), Positives = 35/59 (58%), Gaps = 2/59 (3%)
Query: 39 KLSNIGLKEAEVKRDTEILREKNLKEE-RRQKEEQEKKSQENFQKFLEFCKQQNRVLKK 96
K+++I K +E+K + E LR N++E+ +++ Q + EN Q ++ ++ VLKK
Sbjct: 73 KIASIQKKMSEIKSERE-LRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKK 130
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 30.8 bits (68), Expect = 0.016
Identities = 19/87 (21%), Positives = 37/87 (41%)
Query: 45 LKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDSTNFSF 104
+K+ EVK E ++EK +E +++EK + Q +E K + +
Sbjct: 181 VKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
Query: 105 ECDEPATKKPLENPTNNILNSNHQNTQ 131
+E ++P++ T I + TQ
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQEKTQ 267
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 30.0 bits (66), Expect = 0.028
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 32 ENCIKFKKLSNIGLKEA---EVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCK 88
+ IK K +N G + A E K + R+ + KEERR+ ++ KK++ +K +EF +
Sbjct: 265 QEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEERRRSRDERKKTKAT-KKAMEFEE 323
Query: 89 QQ----NRVLKKFDSTNFSFECDEPATKKPLENPTNNILNSNHQNTQLQNNTKMFD 140
++ R K+ + + E D+ K + I + +NN + D
Sbjct: 324 REKEHDERDEKETEERRKALEMDKGNEKVNAKENEREINQESANEPSSENNATLKD 379
Score = 25.4 bits (54), Expect = 0.69
Identities = 19/58 (32%), Positives = 32/58 (54%), Gaps = 5/58 (8%)
Query: 30 SLENCIKFKKLSNIG-LKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEF 86
S EN K N LKE+ K++ + + KEE+R+ +E++KK++ Q+ EF
Sbjct: 370 SSENNATLKDTENTSVLKESAAKKEAP---KPSSKEEKRRLKEEKKKAKAE-QRAREF 423
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 28.5 bits (62), Expect = 0.082
Identities = 23/75 (30%), Positives = 36/75 (47%), Gaps = 7/75 (9%)
Query: 53 DTEILREKNL-KEERRQKEEQEKKSQENFQKFLEFCKQQNRVL--KKFDSTNFSF-ECDE 108
D + + N+ KE+ +QK E K ENFQ L C N L +++ +FS +
Sbjct: 440 DDNLFMQNNITKEQLKQKREILKSFDENFQNCLNDC---NNTLFGAQYNGVDFSLGQKQR 496
Query: 109 PATKKPLENPTNNIL 123
AT + P+N I+
Sbjct: 497 IATMRAFLKPSNCIV 511
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 28.1 bits (61), Expect = 0.11
Identities = 13/46 (28%), Positives = 24/46 (51%)
Query: 63 KEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDSTNFSFECDE 108
+E+ ++ E + K+ ++N + N +LK + TNFS C E
Sbjct: 462 QEKVKKLENEIKELEKNMVSIKPIVNEINTLLKGYGFTNFSLACTE 507
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 26.9 bits (58), Expect = 0.24
Identities = 20/56 (35%), Positives = 26/56 (45%), Gaps = 6/56 (10%)
Query: 79 NFQKFLEFCKQQNRVLKKFDSTNFSFECDEPATKKPLENPTNNILNSNHQNTQLQN 134
NFQ + +Q N LK+ +FS EP K L+N +NN N Q QN
Sbjct: 371 NFQAYQSTIEQYNNALKQISWISFS----EP--KNLLKNTSNNYQIGTVTNDQGQN 420
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 26.9 bits (58), Expect = 0.24
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 40 LSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQ 89
L ++ + E RD + EK KE ++++ E++ +ENF+K CK+
Sbjct: 93 LKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQE-RENFKKQRAICKE 141
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 26.2 bits (56), Expect = 0.41
Identities = 9/31 (29%), Positives = 23/31 (74%)
Query: 49 EVKRDTEILREKNLKEERRQKEEQEKKSQEN 79
E+K++ + ++ +K+E +Q++E+E K ++N
Sbjct: 105 EIKQEIKQEIKQEIKQETKQEQEKENKPKQN 135
Score = 23.1 bits (48), Expect = 3.4
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 46 KEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRV 93
++ E+K++ + ++ +K+E +Q+ +QE K + ++ E +QN V
Sbjct: 90 QKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSV 137
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 26.2 bits (56), Expect = 0.41
Identities = 24/90 (26%), Positives = 47/90 (51%), Gaps = 7/90 (7%)
Query: 12 KQLDELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEE 71
KQ D LE ++ +SLE+ F L++ + + ++ + +KN +EE+R+ E
Sbjct: 71 KQGDFLEPKEEPKEEPEESLEDI--FSSLNDF---QEKTDKNAQKDEQKNEQEEQRRLRE 125
Query: 72 QE--KKSQENFQKFLEFCKQQNRVLKKFDS 99
Q+ K++QEN + + N+ +K +S
Sbjct: 126 QQRLKQNQENQEMLKGLQQNLNQFTQKLES 155
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 26.2 bits (56), Expect = 0.41
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 60 KNLKE---------ERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDS---TNFSFECD 107
KNLK+ E ++ K + F K L F K +N V+K D+ F E
Sbjct: 7 KNLKDLKNIFLYWYEMFGSNDKSKDMMKAFMKDLAFAKDKNEVIKAQDNELVKEFMQELS 66
Query: 108 EPATKKPLE-NPTNNILNSNHQNTQLQNNTKMFDYFDNPM 146
+ K+ LE TN + + N +N++++ D F + +
Sbjct: 67 SLSFKEQLEFYQTNRDYDPSLDND--ENSSELLDAFTSSL 104
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 26.2 bits (56), Expect = 0.41
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 39 KLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQE 78
K+ + EAE + + +EK K+E+++KEE + K ++
Sbjct: 541 KIWTYPILEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEK 580
Score = 24.6 bits (52), Expect = 1.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 53 DTEILREKNLKEERRQKEEQEKKSQENFQK 82
+ E L E K+E+++K+E+++K + +K
Sbjct: 549 EAETLEEYKPKKEKKEKKEKKEKEEYKLKK 578
Score = 24.3 bits (51), Expect = 1.5
Identities = 12/49 (24%), Positives = 29/49 (58%), Gaps = 5/49 (10%)
Query: 56 ILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDSTNFSF 104
IL + L+E + +KE++EKK ++ +++ + + K +D +++ F
Sbjct: 547 ILEAETLEEYKPKKEKKEKKEKKEKEEY-----KLKKEKKVYDLSSYKF 590
Score = 23.5 bits (49), Expect = 2.6
Identities = 14/52 (26%), Positives = 30/52 (56%), Gaps = 1/52 (1%)
Query: 45 LKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKK 96
L+E + K++ + +EK KEE + K+E++ ++ KF ++ +L+K
Sbjct: 553 LEEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSY-KFSPHSRELFDILRK 603
Score = 22.3 bits (46), Expect = 5.8
Identities = 11/58 (18%), Positives = 30/58 (50%)
Query: 46 KEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKFDSTNFS 103
KE + K++ + E LK+E++ + K + ++ + +++ + L + + NF+
Sbjct: 560 KEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIKTLDERVTENFN 617
>ref|NP_224199.1| putative [Helicobacter pylori J99]
Length = 254
Score = 25.0 bits (53), Expect = 0.90
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 6/43 (13%)
Query: 65 ERRQKEEQEKKSQENFQKFLEFCKQQNRVL------KKFDSTN 101
E ++E + K +E F K +EF Q N+ L FDS N
Sbjct: 99 ELSERENYKSKQKEIFTKQIEFSIQHNKPLIIHIREASFDSLN 141
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 25.0 bits (53), Expect = 0.90
Identities = 22/67 (32%), Positives = 30/67 (43%), Gaps = 9/67 (13%)
Query: 29 KSLENCIKFKKLSNIGLKEAEVKRDTE-----ILREKNLKEERRQKEEQEKKSQENFQKF 83
K + C K L E EVK+ + + R +N KE K+E EK +KF
Sbjct: 1216 KEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKE----KQECEKLLTPEARKF 1271
Query: 84 LEFCKQQ 90
LE +QQ
Sbjct: 1272 LEKQRQQ 1278
Score = 22.7 bits (47), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 33 NCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKK 75
+C+K K + ++ D EI REK KE QKE QE K
Sbjct: 400 DCLKNAKTDEERKECLKLINDPEI-REKFRKELELQKELQEYK 441
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 24.6 bits (52), Expect = 1.2
Identities = 22/79 (27%), Positives = 38/79 (47%), Gaps = 7/79 (8%)
Query: 46 KEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQK--FLE---FCKQQNRV-LKKFDS 99
KEA + +E +K+E R++ ++ S+ N K +L+ F N+ L++F+
Sbjct: 164 KEAHKDKAKHAAKEPKVKKEARKEVSKKANSKTNLTKGHYLQVGVFAHTPNKAFLQEFNQ 223
Query: 100 TNFSFECDEPATKKPLENP 118
E D ATK+ L P
Sbjct: 224 FPHKIE-DRGATKRYLIGP 241
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 24.6 bits (52), Expect = 1.2
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 38 KKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQ 81
K+ + G+K + ++ TE R+K K E ++E++K ++ +
Sbjct: 134 KEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIE 177
Score = 24.6 bits (52), Expect = 1.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 51 KRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQ 90
K E+ + E+ RQK EQEK+ + LE KQ+
Sbjct: 173 KSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQK 212
Score = 23.9 bits (50), Expect = 2.0
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 46 KEAEVKRDTEILREKNLK-EERRQKEEQEKKSQENFQKFLEFCKQQ 90
K+ E++++ + + +K E+ RQK EQE++ + LE +Q+
Sbjct: 125 KQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQK 170
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.3 bits (51), Expect = 1.5
Identities = 17/65 (26%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 25 LSLFKSLENCIKFKKLSN---IGLKEAEVKRDTEILREKN----LKEERRQKEEQEKKSQ 77
L FK+ +N +K N + K+ + ++T +L K L+++ +QKEE+ ++++
Sbjct: 466 LESFKTKQNDPTYKLNDNTYELVSKQLQDYQNTMLLLAKERLLFLEQDLKQKEEEFERAK 525
Query: 78 ENFQK 82
E++ K
Sbjct: 526 EHYVK 530
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 24.3 bits (51), Expect = 1.5
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
Query: 28 FKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFC 87
FKS++N ++ + E R R + +KEE RQK + + K + K L
Sbjct: 24 FKSMDNKQLLEQAGKVAPSEVPEFRTEVNKRLEAMKEEERQKYKADFK--KAMDKNLASL 81
Query: 88 KQQNRVLKK 96
Q++R +K
Sbjct: 82 SQEDRNKRK 90
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 23.9 bits (50), Expect = 2.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 66 RRQKEEQEKKSQENFQKFLE 85
+ ++ E+ KK+QE F FLE
Sbjct: 242 KSERIEESKKNQERFNAFLE 261
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 23.9 bits (50), Expect = 2.0
Identities = 13/63 (20%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 38 KKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQNRVLKKF 97
K+L G+ ++K ++ ++++ + E+ EE+ + +E + + + Q+N+ K+
Sbjct: 54 KQLKERGI---QLKEKSKAQQQESFEREKELMEEEFQVQRELLEIYYGYPTQKNKPGIKY 110
Query: 98 DST 100
D T
Sbjct: 111 DDT 113
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 2.6
Identities = 19/75 (25%), Positives = 30/75 (39%), Gaps = 7/75 (9%)
Query: 38 KKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQEN-------FQKFLEFCKQQ 90
++L I +E + E + N KEE + +E+ K E Q F QQ
Sbjct: 76 EELKRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPKEYEEKVNKSGIIQSFNHAIAQQ 135
Query: 91 NRVLKKFDSTNFSFE 105
N+V + F F+
Sbjct: 136 NQVKLRVGRVRFMFK 150
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 23.5 bits (49), Expect = 2.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 29 KSLENCIKFKKLSNIGLKEAEVKRDTEILREK---NLKEERRQKEEQEKKSQENFQKFLE 85
K N I+ + N K + ++ +E + KEE+R+ +E++KK++ Q+ E
Sbjct: 455 KDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAE-QRARE 513
Query: 86 F 86
F
Sbjct: 514 F 514
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 23.5 bits (49), Expect = 2.6
Identities = 16/56 (28%), Positives = 26/56 (45%), Gaps = 2/56 (3%)
Query: 38 KKLSNIGLKEAEVKRDTEILREKN--LKEERRQKEEQEKKSQENFQKFLEFCKQQN 91
K + I E TE + N +KE+ Q+ QE +EN ++ +E + QN
Sbjct: 285 KPIMPISASNTENHDKTENHKTPNHPIKEDDLQESPQENPQKENIEENIEEKETQN 340
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.5 bits (49), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 46 KEAEVKRDTE-----ILRE--KNLKEERRQKEEQEKKSQENFQKFLEFCK 88
K E+K+D E ++RE + K E +EE E K + + + CK
Sbjct: 227 KHDEIKKDFERNKESLIREIENHCKNECNSEEEPEYKINDLLKNIQQICK 276
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 23.1 bits (48), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (63%)
Query: 9 KIGKQLDELEIEDSLCLSLFKSLENCIK 36
K+ K D +IED+ L L KSL++ I+
Sbjct: 122 KLAKHDDISKIEDAFTLILRKSLQDMIE 149
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 23.1 bits (48), Expect = 3.4
Identities = 17/81 (20%), Positives = 37/81 (44%)
Query: 2 NNIWFQYKIGKQLDELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKN 61
N+I+ Q K K E E + + + +K KKL E++ + L ++
Sbjct: 93 NHIFIQPKSVKSNLMFEKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEK 152
Query: 62 LKEERRQKEEQEKKSQENFQK 82
+E+ QK +++K+ + ++
Sbjct: 153 EAKEQAQKAQKDKREKRKEER 173
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 23.1 bits (48), Expect = 3.4
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 26 SLFKSLENCIKFKKLSNIGLKEAEVK---RDTEILREK 60
+LF L+ IK K ++ G+K E+K +D IL EK
Sbjct: 48 ALFWDLKKPIKVKIVAPKGIKRYEIKVTTKDNLILYEK 85
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 23.1 bits (48), Expect = 3.4
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 9/67 (13%)
Query: 12 KQLDELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEE 71
K +++ I++++ LS F E I F EAE KR E + K LKE++ + +
Sbjct: 47 KIVEKRLIKENMQLSDFNEEELKIMF---------EAEEKRLLEQIHAKELKEKQEKTTK 97
Query: 72 QEKKSQE 78
K+ E
Sbjct: 98 HFKEVWE 104
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 22.7 bits (47), Expect = 4.5
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 39 KLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEF--------CKQQ 90
+L N ++ E +DT + +E + KE + K+ KKS + K F K+
Sbjct: 8 ELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPCVIKEL 67
Query: 91 NRVLKKFDS 99
N L +F S
Sbjct: 68 NEFLLEFGS 76
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 22.7 bits (47), Expect = 4.5
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 26 SLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQK 82
+L K L+ K L+N L++A++ + E +EK + E++ Q E ++QK
Sbjct: 81 NLTKDLKILEKDYLLANQELEKAKIILEKEKQKEKEILEKKEQALLDENAMILHWQK 137
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 22.3 bits (46), Expect = 5.8
Identities = 29/119 (24%), Positives = 48/119 (39%), Gaps = 15/119 (12%)
Query: 27 LFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEF 86
+F +L+N I K + + + EV D E+ K + R + + K+ N +
Sbjct: 280 VFSNLKNGIYKKGIRD----KIEVLDDIEVYNGKIINSFRLKGHFRWKQETLNEEII--- 332
Query: 87 CKQQNRVLKKFDSTNFSFE-CDEPATKKPLENPTNNILNSNHQNTQLQNNTKMFDYFDN 144
N V S FS C E + + PTN I ++ T + ++F FDN
Sbjct: 333 ----NNVFLVVKSDKFSIRYCREG---ERIVMPTNEISKKDNVGTNETASKELFKLFDN 384
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 22.3 bits (46), Expect = 5.8
Identities = 14/52 (26%), Positives = 28/52 (52%), Gaps = 8/52 (15%)
Query: 32 ENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKF 83
E + F+KL + LK+ ++ ++ + +K E+ K ++ENF+KF
Sbjct: 625 EKYLDFEKLKDF-LKD-------RLIGHFRVRNKNERKTEKIKINKENFKKF 668
>ref|NP_223886.1| putative [Helicobacter pylori J99]
Length = 340
Score = 22.3 bits (46), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 45 LKEAEVKRDTEILREKNLKEERRQKE 70
LKEA KR EI R +L+ + QKE
Sbjct: 300 LKEAGYKRVFEIFRLWHLQSMQGQKE 325
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 22.3 bits (46), Expect = 5.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 117 NPTNNILNSNHQNTQLQNN 135
NP N + +N N +QNN
Sbjct: 440 NPIKNTIETNTSNNIIQNN 458
>ref|NP_223544.1| IS606 TRANSPOSASE [Helicobacter pylori J99]
Length = 442
Score = 22.3 bits (46), Expect = 5.8
Identities = 13/54 (24%), Positives = 27/54 (49%)
Query: 38 KKLSNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQKFLEFCKQQN 91
K+ I +++ +VK T+ + KN+K++ + S FL++ +Q N
Sbjct: 313 KQFELIVVEDLQVKNMTKRAKLKNVKQKSGLNQSILNTSFYQIISFLDYKQQHN 366
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 22.3 bits (46), Expect = 5.8
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 67 RQKEEQEKKSQENFQKF 83
R+++ +EK+ ++ FQKF
Sbjct: 58 RKQDSKEKEEKQKFQKF 74
>ref|NP_223693.1| putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 440
Score = 21.9 bits (45), Expect = 7.6
Identities = 9/28 (32%), Positives = 14/28 (49%)
Query: 114 PLENPTNNILNSNHQNTQLQNNTKMFDY 141
PL NP N+L+ + L+ FD+
Sbjct: 11 PLLNPNENLLDQVKSSIILKKGVSYFDW 38
>ref|NP_223459.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 292
Score = 21.9 bits (45), Expect = 7.6
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 71 EQEKKSQENFQKFLEFCKQ 89
E + +E+F++ LEFC+Q
Sbjct: 137 EDDITLKEHFKESLEFCRQ 155
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 21.9 bits (45), Expect = 7.6
Identities = 7/18 (38%), Positives = 13/18 (71%)
Query: 82 KFLEFCKQQNRVLKKFDS 99
K L FC ++ R+++ FD+
Sbjct: 656 KELVFCNKEKRLIRSFDA 673
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 21.6 bits (44), Expect = 10.0
Identities = 8/37 (21%), Positives = 23/37 (61%)
Query: 41 SNIGLKEAEVKRDTEILREKNLKEERRQKEEQEKKSQ 77
+N+ +E E + + + + + +ERR +++QE +++
Sbjct: 189 ANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAK 225
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 21.6 bits (44), Expect = 10.0
Identities = 15/73 (20%), Positives = 33/73 (44%)
Query: 8 YKIGKQLDELEIEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKNLKEERR 67
Y+ L L +E + LS L + + +SN+ L ++++ I + + K+E
Sbjct: 348 YEKALDLGHLPVERGVALSQEDVLRKEVIMQMMSNLKLDYSKIEEKFSIDFKAHFKKELE 407
Query: 68 QKEEQEKKSQENF 80
+ + E+ +F
Sbjct: 408 KLKPYEEAGLLSF 420
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 21.6 bits (44), Expect = 10.0
Identities = 9/38 (23%), Positives = 20/38 (51%)
Query: 45 LKEAEVKRDTEILREKNLKEERRQKEEQEKKSQENFQK 82
+KE K + + K ++ +E ++K +E+F+K
Sbjct: 364 IKEKRGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 401
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 21.6 bits (44), Expect = 10.0
Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 19 IEDSLCLSLFKSLENCIKFKKLSNIGLKEAEVKRDTEILREKN------LKEERRQKEEQ 72
+E+ L+ S + F K + K+A ++ DT + K LK+E K+E+
Sbjct: 84 VEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLE-DTPLEANKQDALLQALKDEANHKKER 142
Query: 73 EKKSQENFQKFLEFCKQQNRV 93
EK+ + ++ + Q +++
Sbjct: 143 EKREVKQEEEIKDINAQLSKI 163
>ref|NP_223035.1| putative [Helicobacter pylori J99]
Length = 266
Score = 21.6 bits (44), Expect = 10.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 123 LNSNHQNTQLQNNTKMFDYFDNP 145
+ SN Q + L+N K FD +P
Sbjct: 1 MKSNFQYSTLENIPKAFDILKDP 23
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,325
Number of Sequences: 1491
Number of extensions: 8720
Number of successful extensions: 82
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 56
length of query: 149
length of database: 494,079
effective HSP length: 70
effective length of query: 79
effective length of database: 389,709
effective search space: 30787011
effective search space used: 30787011
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 44 (21.6 bits)