BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645999|ref|NP_208180.1| hypothetical protein
[Helicobacter pylori 26695]
(60 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobact... 24 0.53
ref|NP_223642.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 22 2.0
ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacte... 22 2.6
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 22 2.6
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 21 5.8
ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter py... 21 5.8
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 21 5.8
ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylo... 21 5.8
ref|NP_223538.1| putative lipopolysaccharide biosynthesis p... 20 10.0
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 20 10.0
>ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 262
Score = 24.3 bits (51), Expect = 0.53
Identities = 13/29 (44%), Positives = 17/29 (57%)
Query: 4 EETYEAYLDTNIKQLEEVRNQKLNKALEL 32
E T E LD ++K LEEV NK +E+
Sbjct: 100 EVTTEGGLDCSLKGLEEVIRAYHNKGIEV 128
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 22.7 bits (47), Expect = 1.5
Identities = 11/34 (32%), Positives = 16/34 (46%)
Query: 4 EETYEAYLDTNIKQLEEVRNQKLNKALELCKQSG 37
+E LD LE + QK+N E ++SG
Sbjct: 90 DENSSELLDAFTSSLENLEKQKINPIREQKRESG 123
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 22.3 bits (46), Expect = 2.0
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 3 TEETYEAYLDTNIKQLEEVRNQKLNKALELCKQSGLFLRKFDGKNF 48
T+ +E D N K+++E + ++N+A L K + L++ D K+F
Sbjct: 210 TDTKFEGEGD-NKKEVKEEKCDQINQASALWKMNKSELKEKDYKDF 254
>ref|NP_224040.1| DIMETHYLADENOSINE TRANSFERASE [Helicobacter pylori J99]
Length = 271
Score = 21.9 bits (45), Expect = 2.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 5 ETYEAYLDTNI--KQLEEVRNQKLNKALELCKQSGLFLRK 42
+TYE +D+N+ K +R +K LEL ++ LFL++
Sbjct: 55 KTYE--IDSNLCEKMRARLRAEKKPFQLELVEKDALFLKE 92
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 21.9 bits (45), Expect = 2.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 30 LELCKQSGLFLRKFDGKNF 48
LELCK+ G+ D NF
Sbjct: 173 LELCKRCGISESHIDATNF 191
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1 MMTEETYEAYLDTNIKQLEEVRNQK 25
++ EE +E Y + K++E + N K
Sbjct: 336 LVPEEKHEQYKERLEKEIEVITNMK 360
>ref|NP_223949.1| 50S RIBOSOMAL PROTEIN L29 [Helicobacter pylori J99]
Length = 66
Score = 20.8 bits (42), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 7 YEAYLDTNIKQLEEVRNQKLNKALEL 32
Y D +IK+LEE+ + K + EL
Sbjct: 3 YTELKDKSIKELEELLHAKKAELFEL 28
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 20.8 bits (42), Expect = 5.8
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 25 KLNKALELCKQSGLFL 40
+LN ALE+ K SG F+
Sbjct: 467 QLNIALEILKSSGSFV 482
>ref|NP_223312.1| ASPARTATE AMMONIA-LYASE [Helicobacter pylori J99]
Length = 468
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 5 ETYEAYLDTNIKQLEEVRN 23
ETY +D +I+Q+ + RN
Sbjct: 200 ETYALMVDRDIEQVLDARN 218
>ref|NP_223538.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 373
Score = 20.0 bits (40), Expect = 10.0
Identities = 10/24 (41%), Positives = 12/24 (49%)
Query: 5 ETYEAYLDTNIKQLEEVRNQKLNK 28
ET+ D N K E N +LNK
Sbjct: 329 ETFTELNDHNKKSFFEFLNTRLNK 352
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 20.0 bits (40), Expect = 10.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 7 YEAYLDTNIKQLEEVR 22
Y AYL N K + E+R
Sbjct: 187 YNAYLRYNYKDIFEIR 202
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,670
Number of Sequences: 1491
Number of extensions: 2178
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 60
length of database: 494,079
effective HSP length: 36
effective length of query: 24
effective length of database: 440,403
effective search space: 10569672
effective search space used: 10569672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)