BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646000|ref|NP_208181.1| hypothetical protein
[Helicobacter pylori 26695]
(166 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223025.1| putative [Helicobacter pylori J99] 40 3e-05
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 35 0.001
ref|NP_223176.1| putative [Helicobacter pylori J99] 34 0.002
ref|NP_222831.1| putative [Helicobacter pylori J99] 33 0.005
ref|NP_222772.1| putative [Helicobacter pylori J99] 32 0.007
ref|NP_224003.1| putative [Helicobacter pylori J99] 32 0.009
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 31 0.015
ref|NP_223642.1| putative [Helicobacter pylori J99] 31 0.020
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 30 0.034
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 30 0.044
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 30 0.044
ref|NP_222821.1| putative [Helicobacter pylori J99] 29 0.075
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 28 0.098
ref|NP_224019.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223830.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 28 0.13
ref|NP_223770.1| putative [Helicobacter pylori J99] 27 0.28
ref|NP_223646.1| putative [Helicobacter pylori J99] 27 0.28
ref|NP_222774.1| putative [Helicobacter pylori J99] 27 0.28
ref|NP_223515.1| putative [Helicobacter pylori J99] 27 0.37
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 0.37
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 26 0.63
ref|NP_223788.1| putative [Helicobacter pylori J99] 26 0.63
ref|NP_223731.1| putative [Helicobacter pylori J99] 25 0.83
ref|NP_223645.1| putative [Helicobacter pylori J99] 25 0.83
ref|NP_223219.1| putative [Helicobacter pylori J99] 25 0.83
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 25 1.1
ref|NP_223617.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223415.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223180.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223951.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pyl... 24 1.8
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 1.8
ref|NP_223656.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223625.1| putative [Helicobacter pylori J99] 24 1.8
ref|NP_223084.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 24 2.4
ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter ... 23 3.1
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 23 3.1
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 3.1
ref|NP_223971.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223322.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_223297.1| putative [Helicobacter pylori J99] 23 4.1
ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99] 23 4.1
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 23 4.1
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 23 5.4
ref|NP_223560.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223553.1| Hydrogenase expression/formation protein [... 23 5.4
ref|NP_223331.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223158.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 23 5.4
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 7.0
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 22 7.0
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 22 7.0
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 22 7.0
ref|NP_222809.1| putative keto-acid dehydrogenase [Helicoba... 22 7.0
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223330.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_223137.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_222990.1| putative [Helicobacter pylori J99] 22 9.2
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 22 9.2
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 40.0 bits (92), Expect = 3e-05
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 5 LETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADE----SEKGYEKDDDKKAEN-L 59
LE L K++ E + + + + + +A ++VK +E E+ EK + AEN
Sbjct: 147 LEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEVAENPQ 206
Query: 60 DKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDACMVRADDDTIEDDEEYG 119
D+E KD + E +D+ V ++ E + L ++ + ++ + I+++++
Sbjct: 207 DEEKPKDDETQGSVE-PPKDEEVSKELETQEELETPKEETQEQEPIKEETQEIKEEKQEK 265
Query: 120 DDDKLRDEILGVMEELCDTLNDNLN 144
D + L M+EL + +N N
Sbjct: 266 TQDSPSAQELEAMQELVKEIQENSN 290
Score = 28.9 bits (63), Expect = 0.075
Identities = 22/85 (25%), Positives = 35/85 (40%), Gaps = 14/85 (16%)
Query: 57 ENLDKEIAKDKASPNDNELY--------------EEDDRVKRDKERDDALRDKEKAKDDA 102
ENL A K PN+ E E + VK+++ ++ KEK K +
Sbjct: 142 ENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQEV 201
Query: 103 CMVRADDDTIEDDEEYGDDDKLRDE 127
D++ +DDE G + +DE
Sbjct: 202 AENPQDEEKPKDDETQGSVEPPKDE 226
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 34.7 bits (78), Expect = 0.001
Identities = 20/81 (24%), Positives = 40/81 (48%), Gaps = 5/81 (6%)
Query: 2 SEPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDK 61
+E + + KD +AM E K + +++ A+ KVK E +K +D+ KKA+ +
Sbjct: 107 TEQRKLIAKDAKAMGEKAKVAVRNTRQD-----ANNKVKKLEKDKEISEDESKKAQEQIQ 161
Query: 62 EIAKDKASPNDNELYEEDDRV 82
+I + D + ++D +
Sbjct: 162 KITDEAIKKIDESVKNKEDAI 182
Score = 22.3 bits (46), Expect = 7.0
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 43 ESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDA 102
E K ++ + A N K++ KDK D ++ K E + + K K+DA
Sbjct: 122 EKAKVAVRNTRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVKNKEDA 181
Query: 103 CM 104
+
Sbjct: 182 IL 183
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 34.3 bits (77), Expect = 0.002
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 5 LETLDKDKQAMSEAIKKDIEKDKENLARVKADKK-VKADESEKGYEKDDDKKAENLDKEI 63
LE + K K++ + ++ + KA KK ++ +E EK +++ D+K+ E K +
Sbjct: 284 LEEKNYQKAERKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKAL 343
Query: 64 AKDK------ASPNDNELYEEDDRVKRDKERDDALRDKEKA---KDDACMVRADDDTIED 114
DK A N+ E+ +E + E + L+D E K+ A A + ++
Sbjct: 344 EMDKGNEKVNAKENEREINQESAN-EPSSENNATLKDTENTSVLKESAAKKEAPKPSSKE 402
Query: 115 DEEYGDDDK 123
++ ++K
Sbjct: 403 EKRRLKEEK 411
Score = 24.6 bits (52), Expect = 1.4
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 6/78 (7%)
Query: 16 SEAIKKDIEKD---KENLARVKADKKVKADESEKGYEKDDDKKAENLDKEI---AKDKAS 69
+ A KD E KE+ A+ +A K +E + E+ KAE +E A++
Sbjct: 373 NNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE 432
Query: 70 PNDNELYEEDDRVKRDKE 87
++ EL E ++ +K+
Sbjct: 433 RDEKELEERRKALEMNKK 450
Score = 24.3 bits (51), Expect = 1.8
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 12 KQAMSEAIKKDIEKDKENLARVKADKKVKA-DESEKGYEKDDDKKAENLDKEIAKDK 67
K+A + K++ + KE + KA+++ + ++ + +++ D+K+ E K + +K
Sbjct: 393 KEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMNK 449
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 32.7 bits (73), Expect = 0.005
Identities = 27/130 (20%), Positives = 59/130 (44%), Gaps = 7/130 (5%)
Query: 19 IKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEE 78
I K IE ++E K+ K++ + + E+ K+E E+ +++ N + +
Sbjct: 123 IDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEI---ELEQERQKTNKSGIELA 179
Query: 79 DDRVKRDKERDDALRDKEKA-KDDACMVRADDDTIEDDEEYGDDDKLRDEILGVMEELCD 137
+ ++K ++ER ++K+KA K + + + TI + + K + + E+ C
Sbjct: 180 NSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQK---DFIKETEQNCQ 236
Query: 138 TLNDNLNFKK 147
+ L KK
Sbjct: 237 EKHGQLFIKK 246
Score = 21.9 bits (45), Expect = 9.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 83 KRDKERDDALRDKEK 97
KR KE DD ++DK K
Sbjct: 77 KRAKELDDKVQDKSK 91
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 32.3 bits (72), Expect = 0.007
Identities = 26/125 (20%), Positives = 63/125 (49%), Gaps = 14/125 (11%)
Query: 3 EPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKA------ 56
E + L +K+ + E K++ DKENL + K + + + +E + + +++KA
Sbjct: 37 EENKALTTEKERL-ERENKNLTADKENLTKEKTELQKQVNELKNSKQVLENEKADWLREK 95
Query: 57 ENLDKEIAKDKASPNDNELYEEDDRVKRDKER-----DDALRDKEKAKDDACMVRADDDT 111
ENL K+ ++ + EL E++ + +KER ++ ++K +++ ++
Sbjct: 96 ENLTKD--RENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQV 153
Query: 112 IEDDE 116
+E+++
Sbjct: 154 LENEK 158
Score = 30.0 bits (66), Expect = 0.034
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 3 EPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKE 62
E E +K+K +E K+ + +KENL + K + + + +E + + +++KA+ L E
Sbjct: 108 EKTELTEKNKVLTTE--KERLATEKENLTKEKTESQKQVNELKNSKQVLENEKAD-LTNE 164
Query: 63 IAKDKASPNDNELYEEDDRVKRDK 86
K K D L E++ R+ +K
Sbjct: 165 NTKLKTDKTD--LTEKNQRLTTEK 186
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 32.0 bits (71), Expect = 0.009
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 32 RVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDA 91
+VKADKK K ++ + ++ E L K+IA+ + P D E +++D R + DA
Sbjct: 748 KVKADKKEKLIQTIQEVKEHAPLDKETLRKKIAQGEIDPYDTEKHKQD----RTFKVGDA 803
Query: 92 LRDKEKAKDDACMVRADD-DTIEDDEEYGDDDKLRDEILGVMEELCDTLNDNLNF 145
K K +++A + D ++ + + +E+L + E TL +N +F
Sbjct: 804 ELLKLKEHYYTPLIKAKNCDWLKHVVKVKSESDFLEELLKITE----TLQENYDF 854
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 31.2 bits (69), Expect = 0.015
Identities = 35/127 (27%), Positives = 61/127 (47%), Gaps = 14/127 (11%)
Query: 9 DKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKA 68
+++K+ ++E K++ E K L ++ KK+KA E+E +K + KK ++ I K
Sbjct: 301 EREKKLLAEKEKQETELAKYKLKDLENQKKLKALEAE--LKKKNTKKPRVVEVPI-PPKT 357
Query: 69 SPNDNELYEEDDRVKRDKER-DDALRDKEKAKDDACMVRADDDTIEDDEEYGDDDKLRDE 127
S +D E RV ++KE + L DKE + R+ T+ + Y + E
Sbjct: 358 SDSD-----ETMRVIKEKENYNGLLVDKE-----TTIKRSYKGTLISENSYSKKTPINLE 407
Query: 128 ILGVMEE 134
L +EE
Sbjct: 408 DLRSLEE 414
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 30.8 bits (68), Expect = 0.020
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 7 TLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAEN-LDKEIAK 65
+LD D+ S + ENL + K + ++ + E G++ ++D K + L+K K
Sbjct: 86 SLDNDEN--SSELLDAFTSSLENLEKQKINP-IREQKRESGWQNNEDNKENSELEKAFKK 142
Query: 66 DKASPNDNELYEEDDRVKRDKERDDALRDKEK 97
D + N + D + +E+++ L KEK
Sbjct: 143 DLSFSQSNPI-PLDKKETSKEEKEEELESKEK 173
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 30.0 bits (66), Expect = 0.034
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 33/177 (18%)
Query: 5 LETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIA 64
LE L+++++++ + KK +KD E + K + D E YE+ ++K KE
Sbjct: 167 LEKLERERRSLED--KKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKL 224
Query: 65 KDKAS------PNDNELYEEDDRVKRDKE-------RDDALRDKEKAKDDACMVRADDDT 111
DK + N +++ + V E AL +KE+AK + C R D +
Sbjct: 225 NDKIALALDVLENTHKITHALESVGHSAEFLKSALLEAGALLEKEQAKLEEC-ERLDIEK 283
Query: 112 IEDD--------EEYGDDDKLRDEILGVMEEL---------CDTLNDNLNFKKVVCM 151
+ + ++YG ++ + V EL C+T + + K C+
Sbjct: 284 VLEKLGMLSGIIKDYGSIAHAKERLGHVKNELHNLKEIDHHCETYHKEIERLKTECL 340
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 29.6 bits (65), Expect = 0.044
Identities = 24/84 (28%), Positives = 42/84 (49%), Gaps = 11/84 (13%)
Query: 1 MSEPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLD 60
MS P + L +K +SE IK+ E + + + R++ ++ + K E+ + K+AE
Sbjct: 187 MSNP-QNLSNNKN-LSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAV 244
Query: 61 KEIAKDKAS---------PNDNEL 75
++ AKDK S P DN +
Sbjct: 245 RQRAKDKISIKTDKSQKSPEDNSI 268
Score = 28.5 bits (62), Expect = 0.098
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 24 EKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDDRVK 83
EK+ N A + D + + + D K+ E K + K+K + + ++D R K
Sbjct: 109 EKEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREK 168
Query: 84 RDKER 88
R +ER
Sbjct: 169 RKEER 173
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 29.6 bits (65), Expect = 0.044
Identities = 22/84 (26%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
Query: 14 AMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDK-KAENLDKEIAKDKASPND 72
+++ +K +++ K NL A++ A + K K+D+ KAE DK A +A+
Sbjct: 535 SLAHQTQKSLDEHKTNLNENDANEIQNAINALKDCIKNDNATKAELEDKTKALTQAAQKL 594
Query: 73 NELYEEDDRVKRDKERDDALRDKE 96
E + ++ K++DD + D E
Sbjct: 595 GEAMANKNNAEQPKKKDDDVIDAE 618
>ref|NP_222821.1| putative [Helicobacter pylori J99]
Length = 152
Score = 28.9 bits (63), Expect = 0.075
Identities = 13/28 (46%), Positives = 16/28 (56%)
Query: 51 DDDKKAENLDKEIAKDKASPNDNELYEE 78
D++ K E K +A DK PN NE Y E
Sbjct: 124 DEEDKKEECQKCLAYDKIIPNRNECYRE 151
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 28.5 bits (62), Expect = 0.098
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 13 QAMSEAIKKDIEKDKENLARVKADKKVKADESEKGY-------EKDDDK---KAENLDKE 62
Q ++ +K + +KE + + K A+ G +KD +K K E L+K+
Sbjct: 572 QEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKD 631
Query: 63 IAKDKASPNDNE-LYEEDDRVKRDKERDDALRDKEKAKDDACMVRADD 109
+AK+ S + N+ E + K+ AL +KE +D + A +
Sbjct: 632 VAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQN 679
Score = 26.2 bits (56), Expect = 0.49
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 14/137 (10%)
Query: 17 EAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENL--------DKEIAKDKA 68
+ IK+++ EN+ + D DE + G KD K E L D I +
Sbjct: 681 KGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWI 740
Query: 69 SPNDNELYEEDDRVKRDKERD-----DALRDKEKAKDDACMVRADDDTIEDDEEYGDDDK 123
S +N L + K K +D A D E + D + + D +++ + K
Sbjct: 741 SKVEN-LNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSVAK 799
Query: 124 LRDEILGVMEELCDTLN 140
+ GV + L D N
Sbjct: 800 ATGDFSGVEQALADLKN 816
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 28.1 bits (61), Expect = 0.13
Identities = 17/49 (34%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Query: 3 EPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKD 51
+PL +D K ++ + IK+D EK K+ + DK V+A +S +G + D
Sbjct: 222 QPLSPIDILKSSLMQEIKQDSEKRKDFI--TTWDKLVEACKSVEGIDID 268
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 28.1 bits (61), Expect = 0.13
Identities = 27/146 (18%), Positives = 61/146 (41%), Gaps = 29/146 (19%)
Query: 41 ADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDDRV-----KRDKERDDALRDK 95
AD+ K K+AEN A+D+A+ + EL +E+ + K ++E+ ++K
Sbjct: 95 ADDQSKKEVAQAQKEAEN-----ARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEK 149
Query: 96 EKAKDDA----------------CMVRADDDTIEDDEEYGDDDKLRDEILGVMEELCDTL 139
+K + + ++ + + + ++E + + +++ E+ C
Sbjct: 150 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQEN 209
Query: 140 NDNLNFKKVVCMGGKVSIAFKFLIFC 165
++ KK +G K IA + C
Sbjct: 210 HNQFFIKK---LGIKAGIAIEIEAEC 232
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 28.1 bits (61), Expect = 0.13
Identities = 23/76 (30%), Positives = 32/76 (41%), Gaps = 4/76 (5%)
Query: 6 ETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK 65
+ LD K A +EA KK KD KKV A ES K Y + +K+ +
Sbjct: 1091 QALDCLKNAKTEAEKKRCVKDLPK----DLQKKVLAKESVKAYLDCVSRARNEKEKKECE 1146
Query: 66 DKASPNDNELYEEDDR 81
+P +L EE +
Sbjct: 1147 KLLTPEARKLLEESKK 1162
Score = 27.3 bits (59), Expect = 0.22
Identities = 26/94 (27%), Positives = 47/94 (49%), Gaps = 9/94 (9%)
Query: 9 DKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAEN--LDKEIAKD 66
D KQ +E KD + + + DKK D+ EKG + + KAE+ +DK++A
Sbjct: 1471 DITKQYETEKTIKDKSLEAKLAKALGGDKK--DDDKEKGKKPTAETKAESNKIDKDVA-- 1526
Query: 67 KASPNDNELYEEDDRVKRD---KERDDALRDKEK 97
+ + N +E+ ++ + K E + + DK+K
Sbjct: 1527 ETAKNISEIALKNKKEKSGDFVDENGNPIDDKKK 1560
Score = 23.5 bits (49), Expect = 3.1
Identities = 20/85 (23%), Positives = 36/85 (41%), Gaps = 2/85 (2%)
Query: 21 KDIEKDKENLARVKADKK--VKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEE 78
K E+ KE L + D + + A ES K Y+ + +K+ + +P +L EE
Sbjct: 549 KTDEERKECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEE 608
Query: 79 DDRVKRDKERDDALRDKEKAKDDAC 103
+ + D + K +A+ C
Sbjct: 609 EAKESVKAYLDCVSQAKTEAEKKEC 633
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 26.9 bits (58), Expect = 0.28
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 27/110 (24%)
Query: 3 EPLETLDKDKQAMSEAIKKDIEKDKENLARV---------KADKKVKAD----------- 42
+ ++ LDK + MSE + K + +A + KA+K +K+
Sbjct: 122 QAIQQLDKQNKEMSELLTKLSQDLVSQIALIQKALKEQEEKAEKPLKSSTPANKNPPLKA 181
Query: 43 ESEKGYEKDDDKKAE-NLDKEIAKDKASPNDNELYEEDDRVKRDKERDDA 91
E+ K EK +KA+ DK+++K K E+++E R+K +A
Sbjct: 182 ETPKNQEKKTQEKAKVEFDKDLSKQK------EIFQEALSFFRNKSYAEA 225
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 26.9 bits (58), Expect = 0.28
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 9/71 (12%)
Query: 25 KDKENLARVKADKKV-----KADESEKGYEKDDDK----KAENLDKEIAKDKASPNDNEL 75
K KE L + A+K+ + ++ KG K D+ + ++KEI K N+ +
Sbjct: 75 KSKEVLKNLNAEKRASLENEREEQGVKGNTKSHDEIEPATEQVIEKEIEKGDEIANNVDY 134
Query: 76 YEEDDRVKRDK 86
YE + V+ K
Sbjct: 135 YENEQEVEITK 145
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 26.9 bits (58), Expect = 0.28
Identities = 29/147 (19%), Positives = 65/147 (43%), Gaps = 24/147 (16%)
Query: 17 EAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELY 76
EA ++E + L R +++ A E+ + + +D + +N I KDK + + EL+
Sbjct: 19 EARISELEDENTELLR---EREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENTELF 75
Query: 77 EEDDRV-------------------KRDKERDDALRDKE-KAKDDACMVRADDDTIEDDE 116
E++ + K KE+ + +K+ AK++ ++ A D E+
Sbjct: 76 AENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKR 135
Query: 117 EY-GDDDKLRDEILGVMEELCDTLNDN 142
E + ++L+ E + ++ + +N
Sbjct: 136 ELTTEKERLKRENTELTHKITELTKEN 162
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 26.6 bits (57), Expect = 0.37
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 4 PLETLDKDKQAMSEAIKKDIEKD----KENLARVKADKKVKADESEKGYEKDDDKKAENL 59
P T D++ K + K+ KEN A+ +A K +E + E+ KAE
Sbjct: 451 PEPTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQR 510
Query: 60 DKEI---AKDKASPNDNELYEEDDRVKRDKE 87
+E A++ ++ EL E ++ +K+
Sbjct: 511 AREFEQRAREHQERDEKELEERRKALEMNKK 541
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 26.6 bits (57), Expect = 0.37
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 57 ENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDAC-------MVRADD 109
EN +K+ D +P D + Y+ D+ R + RDKE+ DD V +
Sbjct: 658 ENFNKD---DHINPRDFQDYQSKYLDFYDEMRPEKGRDKEEINDDLIFEIELIKQVEVNI 714
Query: 110 DTIED-DEEYGDDDKLRDEILGVMEELCDTLNDNLNF--KKVVCMG 152
D I E+Y + L EI GV ++ LN ++ KK + MG
Sbjct: 715 DYILTLIEKYAKEPDL--EIQGVKTQIEPILNSSIELRNKKDLIMG 758
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 25.8 bits (55), Expect = 0.63
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 6/59 (10%)
Query: 42 DESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEED-----DRVKRDKERDDALRDK 95
DE KG E + EN+ KE+AK K S +E E+ ++VK+ + R ++DK
Sbjct: 255 DEIIKGIESSALSERENVFKEVAK-KISEAHSEFSLEEIELSLEKVKKTEIRRMIIQDK 312
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 25.8 bits (55), Expect = 0.63
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 8 LDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK-D 66
LD+ + + E +K+ E ++ +A+ ++KA+ +K EK L+ E K +
Sbjct: 121 LDEKSKQVQELHQKEAEIERLKRENNEAESRLKAENEKKLNEK--------LELEREKIE 172
Query: 67 KASPNDNELYEEDDRVKRDKERDDALRDKEK 97
KA NEL + K+ +E+ + LR++ K
Sbjct: 173 KALHEKNEL-----KFKQQEEQLEMLRNELK 198
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 25.4 bits (54), Expect = 0.83
Identities = 28/117 (23%), Positives = 50/117 (41%), Gaps = 12/117 (10%)
Query: 9 DKDKQAMSEAIKKDIEKDKENLA----RVKADKKVKADESEKGYEKDDDKKAENLDKE-- 62
D Q +S +K+ K+ +NL+ ++K K+ K D G + K + +DK+
Sbjct: 16 DYHSQRVSPHARKEENKEIQNLSENDEKIKLAKQAKQDNLAIGDLESRLKSLKGMDKDAK 75
Query: 63 --IAKDKASPNDNELYEEDDRVKRDKERDDALRD--KEKAKDDACMVRADDDTIEDD 115
+ K+ ++NE D +R K R D D + + A ++ D DD
Sbjct: 76 ELVGISKSYAHNNEKDRSD--FERFKSRLDKAIDSFNQNLDNGAASLKLPSDIDIDD 130
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 25.4 bits (54), Expect = 0.83
Identities = 26/109 (23%), Positives = 54/109 (48%), Gaps = 10/109 (9%)
Query: 10 KDKQAMSEAIKKDIEKDKENLAR---VKADKKVKA----DESEKGYEKDDDKKAENLDKE 62
K+ + + +K+++ KD E L R + ++K +E K YE K+ E L KE
Sbjct: 2062 KNNASKLDYLKQEL-KDLETLQRSVIIPTHTEIKLYDLKNEESKDYELIKVKEVEPL-KE 2119
Query: 63 IAKDKASPNDNELYEEDDRV-KRDKERDDALRDKEKAKDDACMVRADDD 110
A +L E++ ++ +++KE+ DA++ + + + V ++D
Sbjct: 2120 NASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNTLFVNEEED 2168
Score = 23.1 bits (48), Expect = 4.1
Identities = 21/66 (31%), Positives = 34/66 (50%), Gaps = 8/66 (12%)
Query: 5 LETLDKDKQAMSEAIKKDIEKDKENLARVKA--DKKVKADESEKGYE---KDDDKKAENL 59
LE LD + + K ++K +E L + + +K S+K E K+ + K+ NL
Sbjct: 1798 LEALDNAHETEN---KNPLDKAQELLESLSSYDEKGNLIAPSKKELENELKEKEAKSVNL 1854
Query: 60 DKEIAK 65
D+EIAK
Sbjct: 1855 DEEIAK 1860
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 25.4 bits (54), Expect = 0.83
Identities = 13/53 (24%), Positives = 25/53 (46%)
Query: 10 KDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKE 62
K+++ AIK D + + N +KK++ + K+ DK+ + KE
Sbjct: 176 KEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKE 228
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 25.0 bits (53), Expect = 1.1
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 65 KDKASPNDNELYEEDDRVKRD-----KERDDALRDKEKAKDDACMVRADD--DTIEDDEE 117
KDK D Y+ D +++ D KER + + + A++D V D + ++
Sbjct: 321 KDKQGNID---YDLDSKMEFDLQHDYKERAEHIMLVDLARNDMARVSKKRYCDKLLKVDK 377
Query: 118 YGDDDKLRDEILGVMEELCDTLNDNLNFKKVVCMGGKVSIAFKFLIF 164
Y + L ++G +++ CD+L+ +F + G I+ LI+
Sbjct: 378 YSNVMHLVSRVVGELKKGCDSLHAYRSFMNAGTLSGAPKISAIKLIY 424
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.0 bits (53), Expect = 1.1
Identities = 16/60 (26%), Positives = 27/60 (44%), Gaps = 3/60 (5%)
Query: 21 KDIEKDKENLARVKADKKVKADESEKGYE---KDDDKKAENLDKEIAKDKASPNDNELYE 77
++IEK E +A+ + +K K S YE K +NLD I + + +L +
Sbjct: 168 EEIEKRAERIAKNELEKDTKLVSSHDQYEKIKKSGSLNTKNLDPRIQANSLQELNQKLLQ 227
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 24.6 bits (52), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (50%)
Query: 53 DKKAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAK 99
DKK +L A+ K D + Y E ++ + +KER +++E K
Sbjct: 87 DKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQERENFK 133
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 24.6 bits (52), Expect = 1.4
Identities = 12/41 (29%), Positives = 23/41 (55%)
Query: 37 KKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYE 77
KK K ++ EK +++ K E +++ K SP+ EL++
Sbjct: 559 KKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELFD 599
>ref|NP_223951.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pylori J99]
Length = 234
Score = 24.3 bits (51), Expect = 1.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 8 LDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEK 50
++K K+ + IKK++ + + + R +AD ++ A+ EK
Sbjct: 84 IEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENVATQLEK 126
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 24.3 bits (51), Expect = 1.8
Identities = 22/89 (24%), Positives = 41/89 (45%), Gaps = 6/89 (6%)
Query: 12 KQAMSEAIKKD-IEKDKENLARVKADKKVKADE--SEKGYEKDDDKKAENLDKEIAKDKA 68
K+A + +KK+ EK KE VKA+K + S+ + D N+ E + +
Sbjct: 144 KEAPEKEVKKENKEKAKE---EVKANKTPTTENLTSDNPLADEPDLDYANMSAEEVEAEI 200
Query: 69 SPNDNELYEEDDRVKRDKERDDALRDKEK 97
N+ E D + K+++D + K++
Sbjct: 201 ERLLNKRQEADKERRAQKKQEDQAKPKQE 229
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 24.3 bits (51), Expect = 1.8
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 9 DKDKQAMSEAIKKDIEKDKENLARVKADKKVKA 41
+K KQA++ K+D E DKE LA+ + K KA
Sbjct: 90 EKHKQALNLINKEDTE-DKEELAKKIKEIKEKA 121
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 24.3 bits (51), Expect = 1.8
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 3 EPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESE----KGYEKDDDKK--- 55
+P+ A +E K IEK + A+ + +++K SE K EK+ DK
Sbjct: 234 DPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMYL 293
Query: 56 AENLDKEIAKDKASP 70
A+ + A K SP
Sbjct: 294 AQINSADFAPAKKSP 308
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 23.9 bits (50), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 36 DKKVKADESEKGYEKDDDKKAENLDKE 62
+K+V +DES K + D A+ DKE
Sbjct: 130 NKEVSSDESPKEVQLTTDNNAKEHDKE 156
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 23.9 bits (50), Expect = 2.4
Identities = 16/66 (24%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Query: 8 LDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENL-DKEIAKD 66
++K + + E K+ ++ N + K + +S+K E ++DK+ ENL + I ++
Sbjct: 147 MNKTQSLLKEIYKQCLQAFSPNFSLKKEGFENTPSDSQKK-ETNNDKEKENLKENPIDEN 205
Query: 67 KASPND 72
+PN+
Sbjct: 206 HNTPNE 211
>ref|NP_224158.1| FRUCTOSE-1,6-BISPHOSPHATASE [Helicobacter pylori J99]
Length = 290
Score = 23.5 bits (49), Expect = 3.1
Identities = 15/72 (20%), Positives = 30/72 (40%)
Query: 3 EPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKE 62
E + L+K + E ++K L D +KAD + + ++ EN+
Sbjct: 16 EIISLLEKGVKKAQEILEKPDAGSYTQLENSSGDTPIKADLALDKFLEETFLSLENVKSV 75
Query: 63 IAKDKASPNDNE 74
+++K +P E
Sbjct: 76 FSEEKETPVTKE 87
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 23.5 bits (49), Expect = 3.1
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 14 AMSEAIKKDIEKDKENLAR------VKADKKVKADESEKGYEKDDDKKA----------- 56
+ +E KD+EK + R +DKK + ++K YE +K +
Sbjct: 17 SQTELDLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNSALQKAMQEKGV 76
Query: 57 ENLDKEIAKDKASPND 72
EN DK + D P D
Sbjct: 77 ENSDK--SPDAKMPED 90
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 23.5 bits (49), Expect = 3.1
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 17 EAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEI 63
+ IKKD E++KE+L R + + K +E E++ + K +L K I
Sbjct: 229 DEIKKDFERNKESLIR-EIENHCK---NECNSEEEPEYKINDLLKNI 271
>ref|NP_223971.1| putative [Helicobacter pylori J99]
Length = 376
Score = 23.1 bits (48), Expect = 4.1
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 37 KKVKADESEKGYEKDD--------DKKAENLDKEIAKDKASPND--NELYE--EDDRVKR 84
KK+K + K+D +K+ E L DK + N+L + ++ ++R
Sbjct: 219 KKIKNKLQSQIQAKEDALKTFLPLEKRLETLKSRFLCDKENLKSCANQLQQRYQNALIER 278
Query: 85 DKERDDALRDKEK 97
DKE +A +KEK
Sbjct: 279 DKELKNAKNNKEK 291
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 23.1 bits (48), Expect = 4.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 86 KERDDALRDKEKAKDDACMVRADDDTIEDDEEYGDDDKLRDEI 128
+E++ + K +A+D R + IE + + DDDKL E+
Sbjct: 177 EEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEM 219
Score = 22.7 bits (47), Expect = 5.4
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 36 DKKVKADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALR 93
D KV+A E K D K + L + K+K EL +D + K +K+ A R
Sbjct: 23 DSKVEALEGRKQESSLDKKIRQELKSKELKNK------ELKNKDLKNKEEKKETKAKR 74
>ref|NP_223297.1| putative [Helicobacter pylori J99]
Length = 137
Score = 23.1 bits (48), Expect = 4.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 5 LETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIA 64
LET K+ + + K + K+ + K DKK+ G E D +K+ NL
Sbjct: 23 LETGTKNDKKSGKKFYK-LHKNHGSETETKNDKKLYDFTKNSGLEGVDLEKSPNLKSHKK 81
Query: 65 KDK 67
DK
Sbjct: 82 SDK 84
>ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99]
Length = 245
Score = 23.1 bits (48), Expect = 4.1
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 1 MSEPLETLDKDKQAMSEAIKKDIEK-------DKENLARVKADKKVKADESEKGYEKD 51
M P TL KD + D+ K KE + K +K+V+ DE+++ +E D
Sbjct: 95 MPMPSFTLIKDLSVNTGDWFSDMTKRVESWAHSKEEVDITKPEKRVEPDEAQEVFELD 152
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 23.1 bits (48), Expect = 4.1
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 11 DKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAKDKASP 70
D SE +K ++ +N+A + +K+K + E++D +++ K +K
Sbjct: 2 DNYTYSELLKS-LQNKCDNIALIIKPEKIKQELERIEKEQEDPNFWQDVLKARDTNKEKV 60
Query: 71 NDNELYEEDDRVKRDKERDDALRDKEKAKDDA 102
N L E ++K D+++ E A++D+
Sbjct: 61 RLNRLLETYQKMK--NSLDESVELFELAQNDS 90
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 22.7 bits (47), Expect = 5.4
Identities = 10/44 (22%), Positives = 24/44 (53%)
Query: 4 PLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKG 47
P + L+K KQ + ++ E+D+ + + +++ +E +KG
Sbjct: 201 PSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELDIEEIKKG 244
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 22.7 bits (47), Expect = 5.4
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Query: 50 KDDDKKAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEK-AKDDA 102
K++ K A+N K +KD S N+ +D ++ AL+ K AK+DA
Sbjct: 20 KNEVKDAKNAPKSASKD-FSKILNQKISKDKTAPKESPNHSALKATPKDAKEDA 72
>ref|NP_223553.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 370
Score = 22.7 bits (47), Expect = 5.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 19 IKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK 65
IK+ K KE A A+K KA S K +++ K + K IAK
Sbjct: 287 IKRSALKLKEAFASYDAEKVFKAYLSHKTSKENKACKCGEILKGIAK 333
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 22.7 bits (47), Expect = 5.4
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 6 ETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYEKDDDKKAENLDKEIAK 65
+TL + Q + D+++ E + K +KG +K D+ D+EI
Sbjct: 805 KTLMQSVQNCIDTYNADLKRFNERFREAFKQRTAK----DKGIKKSADRYKHLNDREITT 860
Query: 66 DK 67
DK
Sbjct: 861 DK 862
Score = 22.3 bits (46), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (49%)
Query: 82 VKRDKERDDALRDKEKAKDDACMVRADDDTIEDDEEYGDDDK 123
+K + D +L D+ K+ + +DD + DDEE DK
Sbjct: 200 LKALRSHDSSLVDEAIFKEKIKIFGSDDASNPDDEEELQKDK 241
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 22.7 bits (47), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 27 KENLARVKADKKVKADESEKGYEKD 51
KE+ +K K A+E+EKG ++D
Sbjct: 697 KESEKGIKEVSKQAAEETEKGIKRD 721
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 22.7 bits (47), Expect = 5.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 139 LNDNLNFKKVVCMG 152
LN ++NFK+V C+G
Sbjct: 8 LNGDINFKEVRCVG 21
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 22.3 bits (46), Expect = 7.0
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 42 DESEKGYEKDDDKKAEN 58
+ES+ YEK++D++A N
Sbjct: 790 EESDSDYEKNNDQEAIN 806
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 22.3 bits (46), Expect = 7.0
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 52 DDKKAENLDKEIAKDKASPNDNELYEEDDRVKRDKERDDALRDKEKAKDDACMVRADDDT 111
++K A KE+ + K P +L E ++KE +A+ + K++ +++T
Sbjct: 482 ENKSAPEETKEVKEFKFPPLKPKLTTETTAEMQEKETKEAVGKALQTKENDTKEVQENET 541
Query: 112 IEDDE 116
E E
Sbjct: 542 KETKE 546
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 22.3 bits (46), Expect = 7.0
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 20 KKDIEKDKENLARVKADKKVK 40
KKD+EK+K+ L +K+K
Sbjct: 113 KKDLEKEKKELLNKIEKQKIK 133
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 22.3 bits (46), Expect = 7.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 71 NDNELYEEDDRVKRDKERDDALRDKEKAKDDA 102
N E DR+ ER+ A+ D E DDA
Sbjct: 299 NFQEALVASDRIHEILEREPAIIDGELTLDDA 330
>ref|NP_222809.1| putative keto-acid dehydrogenase [Helicobacter pylori J99]
Length = 314
Score = 22.3 bits (46), Expect = 7.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 14 AMSEAIKKDIEKDKENLARVKADKK 38
A S+++K +EK KEN+ A +K
Sbjct: 290 AYSDSLKTLVEKTKENIQDFLASQK 314
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 21.9 bits (45), Expect = 9.2
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 KDKQAMSEAIKKDIEKDKENLARVKADKKVK 40
K K+ I K+ E DK N + + +K+K
Sbjct: 182 KRKEKFKGKILKEFENDKHNQSEIVGLEKLK 212
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 9.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 41 ADESEKGYEKDDDKKAENLDKEIAKDKASPNDNELYEEDD 80
+DE+ K ++ + E +K KA DN +Y DD
Sbjct: 355 SDENIKATKRLYMTATPKVYSESSKAKAKEKDNVIYSMDD 394
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 21.9 bits (45), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (59%), Gaps = 2/28 (7%)
Query: 70 PNDNELYEEDDRVKRDKERDDALRDKEK 97
P E Y E R+K++ ER L+DK+K
Sbjct: 61 PEKREEYIE--RLKKNHERKMILQDKQK 86
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 21.9 bits (45), Expect = 9.2
Identities = 11/42 (26%), Positives = 24/42 (56%)
Query: 87 ERDDALRDKEKAKDDACMVRADDDTIEDDEEYGDDDKLRDEI 128
++ AL DK+ AKDD ++ ++ ++ Y + + +R E+
Sbjct: 27 QKQMALVDKKLAKDDNVWLKKFENYKIYNQIYTEKESVRQEL 68
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 21.9 bits (45), Expect = 9.2
Identities = 32/154 (20%), Positives = 54/154 (34%), Gaps = 29/154 (18%)
Query: 1 MSEPLETLDKDKQAMSEAIKKDIEKDKENLARVKADKKVKADESEKGYE---KDDDKKAE 57
+ E + K + SE KK DK + + +KV +E E GY+ + D +
Sbjct: 107 IKELCQKYQKKLVSSSEYAKKLNAIDK--IKNTEEKQKVLDEELEDGYDFLKEKDFLEWS 164
Query: 58 NLDKEIAKDKASPNDNELYEEDDRVKRDKE------------------------RDDALR 93
D + D +L +D+ ++ K+ DAL
Sbjct: 165 RSDSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALI 224
Query: 94 DKEKAKDDACMVRADDDTIEDDEEYGDDDKLRDE 127
++E+ + DDD + DDD DE
Sbjct: 225 NRERRVKELFRSFDDDDENSVSDPKKDDDSEEDE 258
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.308 0.131 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,583
Number of Sequences: 1491
Number of extensions: 10073
Number of successful extensions: 102
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 77
length of query: 166
length of database: 494,079
effective HSP length: 71
effective length of query: 95
effective length of database: 388,218
effective search space: 36880710
effective search space used: 36880710
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)