BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646001|ref|NP_208182.1| hypothetical protein
[Helicobacter pylori 26695]
(98 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224154.1| putative [Helicobacter pylori J99] 192 2e-51
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 27 0.10
ref|NP_223990.1| putative [Helicobacter pylori J99] 25 0.40
ref|NP_223590.1| putative [Helicobacter pylori J99] 24 0.89
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 1.5
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 22 2.6
ref|NP_223889.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_223515.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_223394.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANS... 22 2.6
ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicoba... 22 3.4
ref|NP_223937.1| METHIONINE AMINOPEPTIDASE [Helicobacter py... 22 3.4
ref|NP_222950.1| putative histidine kinase sensor protein [... 22 3.4
ref|NP_222854.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 22 3.4
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 22 3.4
ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter p... 22 4.4
ref|NP_223995.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 22 4.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_223625.1| putative [Helicobacter pylori J99] 22 4.4
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 22 4.4
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 22 4.4
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 21 5.7
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 21 5.7
ref|NP_223401.1| putative [Helicobacter pylori J99] 21 5.7
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 21 5.7
ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylor... 21 7.5
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 21 7.5
ref|NP_223246.1| DIHYDROOROTASE [Helicobacter pylori J99] 21 7.5
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 21 7.5
>ref|NP_224154.1| putative [Helicobacter pylori J99]
Length = 98
Score = 192 bits (487), Expect = 2e-51
Identities = 97/98 (98%), Positives = 97/98 (98%)
Query: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD
Sbjct: 1 MGVSALGNVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
Query: 61 PKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDIVG 98
PKEGSKNRY NSQRAKAFGLEEEEIELWHEEHLLDIVG
Sbjct: 61 PKEGSKNRYPNSQRAKAFGLEEEEIELWHEEHLLDIVG 98
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 26.9 bits (58), Expect = 0.10
Identities = 18/82 (21%), Positives = 34/82 (40%), Gaps = 5/82 (6%)
Query: 8 NVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKDPKEGSKN 67
N + + N A+ + + D + Q LE + + R + + K G+KN
Sbjct: 585 NKELVGKALNFNKAVAEAKNTGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKN 644
Query: 68 RYQ-----NSQRAKAFGLEEEE 84
+ + NSQ+ + F L +E
Sbjct: 645 KMEAKSQANSQKDEIFALINKE 666
Score = 21.9 bits (45), Expect = 3.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 8 NVTYINQNAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDK 59
N +I++ LN+A+ + D ++ Q+K +L + + Q I+DK
Sbjct: 736 NPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDK 787
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 25.0 bits (53), Expect = 0.40
Identities = 21/67 (31%), Positives = 31/67 (45%), Gaps = 2/67 (2%)
Query: 19 NSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKDPKEG-SKNRYQNSQRAKA 77
N+ IQ L F+ +L AQE + EN+ I+ P G S+N+ KA
Sbjct: 440 NTLIQPSEIIAYRGLNPIFEKELSNAQEIKKNENILIITGNPPYSGASENKGLFEWEVKA 499
Query: 78 -FGLEEE 83
+G+E E
Sbjct: 500 TYGIEPE 506
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 23.9 bits (50), Expect = 0.89
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 54 QAISDKDPKEGSKNRYQNSQRA 75
QA DKDP+ K Y+++Q+A
Sbjct: 209 QAKKDKDPEVWLKEEYKDNQQA 230
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.1 bits (48), Expect = 1.5
Identities = 15/58 (25%), Positives = 30/58 (50%), Gaps = 4/58 (6%)
Query: 34 AQSFQSKLE----LAQETRALENMQAISDKDPKEGSKNRYQNSQRAKAFGLEEEEIEL 87
AQ+ Q++L L Q + L+N+ +D++ E +S+RA G++ + E+
Sbjct: 1354 AQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEV 1411
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 22.3 bits (46), Expect = 2.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 44 AQETRALENMQAISDKDPKE 63
AQ R+LEN + ++K PKE
Sbjct: 23 AQTQRSLENFKIGTEKMPKE 42
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 22.3 bits (46), Expect = 2.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 40 KLELAQETRALENMQAISDKDPKEGSKNRYQNSQR 74
K E+ QE + + + PK+ S + QN Q+
Sbjct: 111 KQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQK 145
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 22.3 bits (46), Expect = 2.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 51 ENMQAISDKDPKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLD 95
E +A +K P E +K + +NS G EEEE++ E D
Sbjct: 418 ERHKAKENKQPLEENKVKPRNS------GFEEEEVKTRRPEPTKD 456
>ref|NP_223394.1| putative [Helicobacter pylori J99]
Length = 241
Score = 22.3 bits (46), Expect = 2.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 10 TYINQNAPLNSAIQQGARSDMLDLAQSFQ 38
T+I+ ++PLN+ G S + Q+FQ
Sbjct: 18 TFIDHHSPLNALFLHGWGSSKEIMQQAFQ 46
>ref|NP_223076.1| putative RIBOSOMAL PROTEIN L11 METHYLTRANSFERASE [Helicobacter
pylori J99]
Length = 329
Score = 22.3 bits (46), Expect = 2.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 43 LAQETRALENMQAISDKDPKE 63
LA E +LEN++A DK+ E
Sbjct: 30 LALEESSLENLKAFDDKETIE 50
>ref|NP_224072.1| putative CYTOCHROME C PEROXIDASE [Helicobacter pylori J99]
Length = 350
Score = 21.9 bits (45), Expect = 3.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 26 ARSDMLDLAQSFQSKLELAQETRALENMQAISDKDPKEGSKN 67
A SDM + ++ +S+LE +AL+ Q +D G+KN
Sbjct: 18 ALSDMDLIKKAKESQLEPMPMGKALKEYQIKKTRDVGIGAKN 59
>ref|NP_223937.1| METHIONINE AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 253
Score = 21.9 bits (45), Expect = 3.4
Identities = 13/31 (41%), Positives = 15/31 (47%)
Query: 55 AISDKDPKEGSKNRYQNSQRAKAFGLEEEEI 85
AIS K PKE R A+A L E E+
Sbjct: 2 AISIKSPKEIKALRKAGELTAQALALLEREV 32
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 381
Score = 21.9 bits (45), Expect = 3.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 32 DLAQSFQSKLELAQETRALENMQAISDKDPKEGSKNR 68
D A SF+ LE +LEN + +D E N+
Sbjct: 21 DKASSFKGLLENENNVISLENFKPKESEDLLENFSNK 57
>ref|NP_222854.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 232
Score = 21.9 bits (45), Expect = 3.4
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 88 WHEEHLLD 95
WHE+H+LD
Sbjct: 116 WHEKHMLD 123
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 21.9 bits (45), Expect = 3.4
Identities = 10/34 (29%), Positives = 17/34 (49%)
Query: 51 ENMQAISDKDPKEGSKNRYQNSQRAKAFGLEEEE 84
EN + +S+ PK+ KN + + +EEE
Sbjct: 172 ENQENMSENAPKDAQKNNKPLKEEKEETKEKEEE 205
>ref|NP_224130.1| ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 623
Score = 21.6 bits (44), Expect = 4.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 56 ISDKDPKEGSKNRYQNSQRAKAFGLEEEEIE 86
I+D+ + G+K RYQ + A + G + ++
Sbjct: 351 ITDEQHRFGTKQRYQLEKMASSKGNKPHSLQ 381
>ref|NP_223995.1| putative [Helicobacter pylori J99]
Length = 183
Score = 21.6 bits (44), Expect = 4.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 28 SDMLDLAQSFQSKLELAQETRALENMQAISDKD 60
+D L+L ++ KLE + EN+ + KD
Sbjct: 78 NDTLELLKALYFKLEKLESLLLKENLLELEQKD 110
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 21.6 bits (44), Expect = 4.4
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 48 RALENMQAISDKDPKEGSKNRYQN 71
+ LEN ++ DKD KE +N N
Sbjct: 420 KELENDESNDDKDNKEKEQNAQFN 443
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 21.6 bits (44), Expect = 4.4
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 75 AKAFGLEEEEIELWHEE 91
A FG ++E+++ W+E+
Sbjct: 762 ANHFGFKQEKLQRWYEK 778
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 21.6 bits (44), Expect = 4.4
Identities = 13/55 (23%), Positives = 25/55 (44%)
Query: 15 NAPLNSAIQQGARSDMLDLAQSFQSKLELAQETRALENMQAISDKDPKEGSKNRY 69
NA + Q + ++ +Q +++ + +QE + + QAI KE K Y
Sbjct: 238 NAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDKPMY 292
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.6 bits (44), Expect = 4.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 SKLELAQETRALENMQAISDKDPKEGSKN 67
S LE+A T+ + +SD +EG N
Sbjct: 2571 SLLEMASYTQQTSRLTKLSDFRAREGESN 2599
Score = 20.8 bits (42), Expect = 7.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 2 GVSALGNVTYINQNAPLN 19
G L N+T N NAPL+
Sbjct: 937 GKVTLNNITLKNLNAPLS 954
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 21.6 bits (44), Expect = 4.4
Identities = 10/36 (27%), Positives = 17/36 (46%)
Query: 29 DMLDLAQSFQSKLELAQETRALENMQAISDKDPKEG 64
D+ D+A +F E + +NMQ +P+ G
Sbjct: 344 DVRDIAMTFAGIDPADSEEQTKDNMQGAPTNEPEYG 379
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 21.2 bits (43), Expect = 5.7
Identities = 25/97 (25%), Positives = 39/97 (39%), Gaps = 27/97 (27%)
Query: 6 LGNVTYINQNA-PLNSAIQQGARS-DMLDLAQSFQSKLELAQE----TRALENMQAISDK 59
+G + N+N P N IQ + + LA F + +L ++ T+ALEN+
Sbjct: 27 MGLIERYNKNKEPTNPYIQSNIKYISLTPLAIEFLNAQDLLRKNFCYTQALENL------ 80
Query: 60 DPKEGSKNRYQNSQRAKAFGLEEEEIELWHEEHLLDI 96
+ FG E E+ + E H LDI
Sbjct: 81 ---------------LQGFGAECREVMIELENHYLDI 102
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 21.2 bits (43), Expect = 5.7
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 50 LENMQAISDKDPKEGSKNRYQNSQRAKAFGLE 81
L N+ AISD PK ++ + S+ + +E
Sbjct: 293 LFNLAAISDYLPKTSFNHKLKKSELGETLNVE 324
>ref|NP_223401.1| putative [Helicobacter pylori J99]
Length = 419
Score = 21.2 bits (43), Expect = 5.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 58 DKDPKEGSKNRYQ 70
DKD ++G K RYQ
Sbjct: 198 DKDLEDGQKYRYQ 210
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 21.2 bits (43), Expect = 5.7
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 65 SKNRYQNSQRAKAFGLEEEEIEL 87
+K RYQN ++ K ++++IE+
Sbjct: 64 NKFRYQNEKKIKEAKKKQKQIEI 86
>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
Length = 336
Score = 20.8 bits (42), Expect = 7.5
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 2 GVSALGNVTYINQNAPLNSAI 22
GV +TYIN NA + + +
Sbjct: 108 GVKEFYPITYINSNAEVKAKV 128
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 20.8 bits (42), Expect = 7.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 19 NSAIQQGARSDMLDLAQSFQSKLELAQETR 48
N+ + +G DM+ +SK + Q+TR
Sbjct: 135 NALVIKGVEKDMIKTISFGESKPKCVQKTR 164
>ref|NP_223246.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 339
Score = 20.8 bits (42), Expect = 7.5
Identities = 12/22 (54%), Positives = 15/22 (67%), Gaps = 1/22 (4%)
Query: 42 ELAQETRALENMQA-ISDKDPK 62
EL ++ ALEN+QA ISD K
Sbjct: 269 ELFEKHNALENLQAFISDNAKK 290
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 20.8 bits (42), Expect = 7.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 40 KLELAQETRALENMQAISDKDPKEGSK 66
++E + +AL+ MQA+ PK K
Sbjct: 209 RIENVSKDKALDAMQALMKNAPKTALK 235
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.126 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,459
Number of Sequences: 1491
Number of extensions: 3452
Number of successful extensions: 32
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of query: 98
length of database: 494,079
effective HSP length: 64
effective length of query: 34
effective length of database: 398,655
effective search space: 13554270
effective search space used: 13554270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 41 (20.4 bits)