BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646006|ref|NP_208187.1| hypothetical protein
[Helicobacter pylori 26695]
(288 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224149.1| putative [Helicobacter pylori J99] 439 e-125
ref|NP_224020.1| putative [Helicobacter pylori J99] 123 6e-30
ref|NP_223180.1| putative [Helicobacter pylori J99] 41 4e-05
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 33 0.009
ref|NP_223674.1| putative [Helicobacter pylori J99] 33 0.011
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 0.47
ref|NP_223659.1| putative [Helicobacter pylori J99] 27 0.47
ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (... 27 0.47
ref|NP_224090.1| putative [Helicobacter pylori J99] 26 1.1
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 25 1.8
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 2.3
ref|NP_222783.1| putative [Helicobacter pylori J99] 25 2.3
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 25 3.1
ref|NP_224030.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_223860.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_222802.1| putative [Helicobacter pylori J99] 25 3.1
ref|NP_223240.1| putative [Helicobacter pylori J99] 23 6.8
ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter p... 23 8.9
ref|NP_223617.1| putative [Helicobacter pylori J99] 23 8.9
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 439 bits (1128), Expect = e-125
Identities = 222/287 (77%), Positives = 239/287 (82%), Gaps = 6/287 (2%)
Query: 1 MEKELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASI 60
ME+ L F LNKPPLEY KGVE+FYNAY +VLEMQD HAHLLSY D+ VILC SI
Sbjct: 1 MEERLADQFERLNKPPLEYFKGVENFYNAYCKVLEMQDWHAHLLSYLASDFWRVILCTSI 60
Query: 61 LHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEY 120
LHHYSDQDIETLKELLVKFYYQ+WVA + + + QT CNII LKE KS++ I SIVKEY
Sbjct: 61 LHHYSDQDIETLKELLVKFYYQNWVATREEP-KKQTNCNIIKALKENKSVESIASIVKEY 119
Query: 121 LDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMD 180
LD ITQ FK NL+DS LY + K + KNSWVKP+LILVEY MSDNANPA IKMD
Sbjct: 120 LDYHKITQDFKKNLQDSKLYEQH-----KKSSKNSWVKPVLILVEYSMSDNANPAYIKMD 174
Query: 181 DDLHVERILPQNPDPSSQWMKDFSEEERGLYTHSLANLTLLGGKKNTKALSQALNQDFKE 240
DDLHVERILPQNPDPSSQW+KDFSEEER LYTHSLANLTLLGG KNTKALSQALNQDFKE
Sbjct: 175 DDLHVERILPQNPDPSSQWVKDFSEEERELYTHSLANLTLLGGTKNTKALSQALNQDFKE 234
Query: 241 KKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRYTEWTPTSLEKRKE 287
KKEIYMGKTI LDNKKTF+VMTCYDMTKNDVCRYTEW P +LEKRKE
Sbjct: 235 KKEIYMGKTIALDNKKTFKVMTCYDMTKNDVCRYTEWMPKNLEKRKE 281
>ref|NP_224020.1| putative [Helicobacter pylori J99]
Length = 201
Score = 123 bits (308), Expect = 6e-30
Identities = 71/191 (37%), Positives = 103/191 (53%), Gaps = 22/191 (11%)
Query: 95 QTCCNIINVLKEKKSMDYITSIVKEYLDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKN 154
QT NII +K K ++ I ++ + ++ N ++ NL +S+ + +
Sbjct: 5 QTSINIIKNVKSNKGIETIQELILDNIESYNTFNQYHYNLWESS-----------SVYPS 53
Query: 155 SWVKPILILVEYFMSDNANPACIKMDDDLHVERILPQNPDPSSQWMKDFSEEERGLYTHS 214
W++P+L L YFM+D P I MD + VE ILPQ P SQW DF +E+R + +
Sbjct: 54 KWLRPVLALANYFMTDEEKPHFIAMDAETQVEHILPQTPKRGSQWNADFDKEKREKWVNH 113
Query: 215 LANLTLLGGKKNTKALSQALNQDFKEKKEIYMGKTIMLDNKKTFRVMTCYDMTKNDVCRY 274
+ANLTLL KKN K ALN DF EK++IY G K +V++CYD+TK Y
Sbjct: 114 IANLTLLKRKKNAK----ALNGDFDEKRKIYGG-------KDPSKVISCYDITKELYSDY 162
Query: 275 TEWTPTSLEKR 285
+W SL+KR
Sbjct: 163 RKWDEKSLQKR 173
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 40.8 bits (94), Expect = 4e-05
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 30/188 (15%)
Query: 65 SDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEYLDDK 124
SDQD T+ L + + V G + ++ + +K+ Y+ S+ K + K
Sbjct: 343 SDQDFTTISTLTESYLCRRAVCGLGTNSLNKIFPFFTKKIDKKQ---YLKSVEKHFGSLK 399
Query: 125 NITQRFKDN--LKDSNLYTKFYFINGKTAKKNSWVKPILILVEYFMSDNANPACIKMDDD 182
QRF +N KDS + FY KKN + L +E F D P + +
Sbjct: 400 G-KQRFPNNDEFKDSFITIDFYKF-----KKNKY---FLERLEKF--DTNEPVDTQKCE- 447
Query: 183 LHVERILPQNPDPSSQWMKDFSEEERGL---YTHSLANLTLLGGKKNTKALSQALNQDFK 239
+E I+PQ +P +W D E + Y H++ NLTL G ++ N+ F+
Sbjct: 448 --IEHIMPQTLNP--KWEGDLGENFEAIHEKYLHTIGNLTLTGYN------AKYSNKSFQ 497
Query: 240 EKKEIYMG 247
EK+++ G
Sbjct: 498 EKRDMEKG 505
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 33.1 bits (74), Expect = 0.009
Identities = 35/123 (28%), Positives = 62/123 (49%), Gaps = 8/123 (6%)
Query: 5 LVTWFNI-LNKPPLEYLKGVEDFY-NAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILH 62
L T NI +N P ++LKGV+DF+ N GE+++ + + + + +DD + +
Sbjct: 189 LSTKVNISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKL 248
Query: 63 HYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEYLD 122
+ S Q KE V F Y D G+ + +T ++ +LKEK +D +++K D
Sbjct: 249 NVSIQKENGKKEDFV-FTYGDAEKGE---NQFKTLGDLQKLLKEKTGLD--LNLIKSEKD 302
Query: 123 DKN 125
K+
Sbjct: 303 AKS 305
>ref|NP_223674.1| putative [Helicobacter pylori J99]
Length = 200
Score = 32.7 bits (73), Expect = 0.011
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 150 TAKKNSWVKPI-LILVEYFMSDNANPACIKMDDDLH-VERILPQNPDPSSQWMKDFSEEE 207
T K W K + +L EY + N + D + +E ILPQ PD K+ + +
Sbjct: 50 TEKWYKWGKTLNYLLYEYELYHNPETT-LNFDGSIESIEHILPQKPDQGYS-AKEKNWAK 107
Query: 208 RGLYTHSLANLTLLGGKKNTKALSQALNQDFKEKKEIYM 246
H+L NL L+ N S N+ F EK++ Y+
Sbjct: 108 NPHVVHALGNLLLIPKNAN----SSLSNKPFDEKRKEYL 142
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 27.3 bits (59), Expect = 0.47
Identities = 18/74 (24%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Query: 23 VEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILHHYSDQDIETLKELLVKFYYQ 82
++ + GE + D LLS ++ L S++H + D D+E LK+ V +
Sbjct: 303 IQGVFQGIGEKIYRADSKKDLLSVLFEN--KKFLVGSLVHKFDDNDLEDLKKQPV---LK 357
Query: 83 DWVAGQTKTTRSQT 96
+W+ + R+Q+
Sbjct: 358 EWIVLVDECHRTQS 371
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 27.3 bits (59), Expect = 0.47
Identities = 37/164 (22%), Positives = 64/164 (38%), Gaps = 21/164 (12%)
Query: 105 KEKKSMDYITSIVKEYLDDKNITQRFKDNLKDSNLYTKFYFINGKTAKKNSWVKPILILV 164
KE+K+++ I S E+ +K + + + LKD N N + + I +
Sbjct: 246 KEEKALEQIKSPQDEWDLNKALQKEYLQELKDKNKAKALDIQNNHSTPLKQKISKFKIAL 305
Query: 165 EYFMSDNANPACIKMDDDLHVERILPQNPDPSSQWMKDFSEEE----RGLYTHSLANLTL 220
N + L ++RI P S+ +K+ S+ E G Y L
Sbjct: 306 -----FNHKDTSDDEKESLSIDRI--DKRKPVSEHLKNMSKHELYELLGFYQKELDKKQN 358
Query: 221 LGGKKNTKALSQALNQDFK---------EKKEIYMGKTIMLDNK 255
KN A+ L++DF+ +KKE+ + K LD +
Sbjct: 359 HSAFKNF-AILNGLDRDFERETKGYSVLKKKEMLLNKLKHLDKR 401
>ref|NP_223347.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 404
Score = 27.3 bits (59), Expect = 0.47
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 3/51 (5%)
Query: 24 EDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILHHYSDQDIETLKE 74
E F Y EV+ R A YK D LC +L HY +++++ +K+
Sbjct: 75 EAFKEHYMEVIYQFLRTA---LYKSKDMRFAKLCDDLLQHYQNENMQKMKQ 122
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 26.2 bits (56), Expect = 1.1
Identities = 20/72 (27%), Positives = 30/72 (40%), Gaps = 7/72 (9%)
Query: 23 VEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILHHYSDQDIETLKELLVKFYYQ 82
+E+++ AY L R HL S DYL + H + E L+E+ FY
Sbjct: 512 LENYHKAYFHFL----RAFHLNSA---DYLSAVFAVLASHFTHEDTTEFLREITENFYSH 564
Query: 83 DWVAGQTKTTRS 94
D+ + K S
Sbjct: 565 DFSSPTQKALLS 576
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 25.4 bits (54), Expect = 1.8
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 5/65 (7%)
Query: 10 NILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILHHYSDQDI 69
NI KPPLE LKG Y+A + L+ Q HL+ Y + IL + + +
Sbjct: 379 NIQKKPPLESLKG----YSALLKELD-QLEIRHLIRYSGTENKLRILLEAKDEKLLESKM 433
Query: 70 ETLKE 74
+ LKE
Sbjct: 434 QELKE 438
Score = 23.1 bits (48), Expect = 8.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 26 FYNAYGEVLEMQDRHAHLLSYKDDDYLH 53
F+N+YG L+ ++ A + D++ LH
Sbjct: 110 FFNSYGYKLKEEEERAIEEIFHDEELLH 137
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 25.0 bits (53), Expect = 2.3
Identities = 23/126 (18%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 3 KELVTWFNILNKPPLEYLKGVEDFYNAYGEVLEMQDRHAHLLSYKDDDYLHVILCASILH 62
+ L+T F + K P+ +DF +G++L++++ ++ DD
Sbjct: 619 ERLLTEFPL--KEPIISESQKKDFIKLFGKILKLENILNSFENFNKDD------------ 664
Query: 63 HYSDQDIETLKELLVKFYYQ-DWVAGQTKTTRSQTCCNIINVLKE-KKSMDYITSIVKEY 120
H + +D + + + FY + G+ K + I ++K+ + ++DYI +++++Y
Sbjct: 665 HINPRDFQDYQSKYLDFYDEMRPEKGRDKEEINDDLIFEIELIKQVEVNIDYILTLIEKY 724
Query: 121 LDDKNI 126
+ ++
Sbjct: 725 AKEPDL 730
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 25.0 bits (53), Expect = 2.3
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 90 KTTRSQTCCNIINV-------LKEKKSMDYITSIVKEYLDDKNITQRFKDNLKDSNLYTK 142
K S C +NV +K + D+ I Y K + + KD +D +TK
Sbjct: 257 KDRTSFECLKYLNVEIISDQGIKSQHMQDFADKIKAYYKQKKEVKRELKDLQRDKEFWTK 316
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 24.6 bits (52), Expect = 3.1
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 167 FMSDNANPACIKMDDDLHVERILPQNPDP----SSQWMKDFSEEERGL-YTHSLANLTLL 221
F+SDN N + L V+ L + P + + DF+E + + + +T
Sbjct: 16 FLSDNTNEVLENPKEILFVKTPLNEKYAPLIAEKNLAILDFNELKNYFDFKIKIVGITGT 75
Query: 222 GGKKNTKALSQALNQDFKEKKEIYMGKTIMLDNK 255
GK T +L +L D +K + + +D+K
Sbjct: 76 NGKTTTASLMYSLLLDLNKKTALLGTRGFFIDDK 109
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 24.6 bits (52), Expect = 3.1
Identities = 16/60 (26%), Positives = 27/60 (44%), Gaps = 11/60 (18%)
Query: 56 LCASILHHYSDQDIETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITS 115
L S LH SD+D + + + + YY D+V I N+ K+K ++ + S
Sbjct: 402 LSFSNLHASSDRDKQIVADYVNSLYYNDFVLN-----------GIFNLFKDKDAIVFYLS 450
>ref|NP_223860.1| putative [Helicobacter pylori J99]
Length = 234
Score = 24.6 bits (52), Expect = 3.1
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 69 IETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKEKKSMDYITSIVKEYLDDKNIT 127
++TLK++ + W A + + N + K +D++ ++K+YL D+ T
Sbjct: 34 VKTLKDITI------WCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERST 86
>ref|NP_222802.1| putative [Helicobacter pylori J99]
Length = 457
Score = 24.6 bits (52), Expect = 3.1
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 5/44 (11%)
Query: 70 ETLKELLVKFYYQDWVAGQTKTTRSQTCCNIINVLKE-KKSMDY 112
E LKE +K +Y W+ + K+ + + + +LKE KS Y
Sbjct: 55 ENLKESYLKAWYSPWLDAKVKSNKKE----VFWILKEMNKSTGY 94
>ref|NP_223240.1| putative [Helicobacter pylori J99]
Length = 232
Score = 23.5 bits (49), Expect = 6.8
Identities = 7/22 (31%), Positives = 13/22 (58%)
Query: 156 WVKPILILVEYFMSDNANPACI 177
W KP+ + + Y +S + AC+
Sbjct: 81 WAKPVPVDMRYIVSQKGSLACV 102
>ref|NP_223717.1| PROTOPORPHYRINOGEN OXIDASE [Helicobacter pylori J99]
Length = 276
Score = 23.1 bits (48), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 12 LNKPPLEYLKGVEDFY 27
LN P+EYL G DFY
Sbjct: 64 LNDCPIEYLLGSCDFY 79
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 23.1 bits (48), Expect = 8.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 197 SQWMKDFSEEERGLYTHSLA 216
+Q ++D EE+RGL T +LA
Sbjct: 476 TQLLQDLEEEKRGLKTLTLA 495
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,215
Number of Sequences: 1491
Number of extensions: 16529
Number of successful extensions: 71
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 20
length of query: 288
length of database: 494,079
effective HSP length: 77
effective length of query: 211
effective length of database: 379,272
effective search space: 80026392
effective search space used: 80026392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)