BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646007|ref|NP_208188.1| hypothetical protein
[Helicobacter pylori 26695]
(271 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224148.1| putative [Helicobacter pylori J99] 316 5e-88
ref|NP_224019.1| putative [Helicobacter pylori J99] 174 3e-45
ref|NP_223180.1| putative [Helicobacter pylori J99] 80 4e-17
ref|NP_222895.1| putative [Helicobacter pylori J99] 72 1e-14
ref|NP_223290.1| putative [Helicobacter pylori J99] 67 5e-13
ref|NP_223672.1| putative [Helicobacter pylori J99] 49 1e-07
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 32 0.023
ref|NP_223591.1| putative [Helicobacter pylori J99] 31 0.030
ref|NP_224134.1| putative [Helicobacter pylori J99] 27 0.57
ref|NP_224041.1| putative [Helicobacter pylori J99] 27 0.75
ref|NP_223258.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_222950.1| putative histidine kinase sensor protein [... 25 1.7
ref|NP_222939.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223661.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223186.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223762.1| putative [Helicobacter pylori J99] 25 2.8
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 25 2.8
ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99] 24 3.7
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 3.7
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 24 3.7
ref|NP_223686.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 24 4.8
ref|NP_222753.1| putative [Helicobacter pylori J99] 24 4.8
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 6.3
ref|NP_223512.1| putative [Helicobacter pylori J99] 23 6.3
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 23 8.3
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 8.3
ref|NP_223386.1| putative [Helicobacter pylori J99] 23 8.3
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 23 8.3
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 23 8.3
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 316 bits (809), Expect = 5e-88
Identities = 168/257 (65%), Positives = 199/257 (77%), Gaps = 6/257 (2%)
Query: 3 KIESNDSHLRGILKDEL--YYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGS 60
+++ D L+ IL L YYQIP YQRPYQWTE+NCEKLLDDLF +YE +E YFCGS
Sbjct: 4 EVKGVDRPLKDILATALVSYYQIPDYQRPYQWTEKNCEKLLDDLFSSYEYYKESGYFCGS 63
Query: 61 LVLIAISKDSK--ATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRH 118
LVLI I+ DS+ A TYD+VDGQQRLSTFILLAKVLA LY+ LD + E L++ D
Sbjct: 64 LVLIVINTDSETNAETYDIVDGQQRLSTFILLAKVLATLYDKDLDTTSRELLEKSLGDTG 123
Query: 119 TE-RKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKN 177
E R+RL FN +G NA+ DF ALEHFNDSQASKNKNNKNNYLKNAICLKDYL +KEIK+
Sbjct: 124 GEKRERLHFNAMGLNAKDDFVYALEHFNDSQASKNKNNKNNYLKNAICLKDYLKEKEIKD 183
Query: 178 INDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLKH-AKEHERE 236
IN FI WLY V FI CPN+ ALRIF+VLNARGLPL+A D+FK ELLK A++ ++E
Sbjct: 184 INAFITWLYFKVVFIKTTCPNVSMALRIFSVLNARGLPLHAIDVFKVELLKKLAQKKDQE 243
Query: 237 EFVSRWNALSQKCSDND 253
EF+SRW+AL QKCS+N+
Sbjct: 244 EFLSRWSALHQKCSENE 260
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 174 bits (440), Expect = 3e-45
Identities = 104/285 (36%), Positives = 164/285 (57%), Gaps = 31/285 (10%)
Query: 1 MAKIESNDSHLRGILKD-ELYYQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCG 59
MAK+E L IL D E +YQ+P YQRPY W +++ L+DDL +Y ++RE +YFCG
Sbjct: 1 MAKVEVELKKLYQILVDAEYFYQVPNYQRPYVWDKDHLGALIDDLVVSYTNNREDEYFCG 60
Query: 60 SLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRH- 118
S+V+ KD + +DVVDGQQRL++FI+LA + LY L K+ ++E DRH
Sbjct: 61 SIVIAENPKDKR---WDVVDGQQRLTSFIILACTILRLYKHRLGQKSKAFIEESIYDRHD 117
Query: 119 TERKRLSF-----------NTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLK 167
E++RL F NT+ N E++ ++ S+ +K K ++N YL+NA +
Sbjct: 118 KEKERLKFLTAQNYNSIFENTVLKNLEFE-----DNIKKSEWNK-KFDENTYLRNAYYFR 171
Query: 168 DYLMKK----EIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPLNATDIFK 223
+ L + I +++DF++W Y ++ IIC D A++IF VLN RG PL+ DI K
Sbjct: 172 ELLNESMENGSISDMDDFVKWFYEHIALTRIICFEQDSAMQIFQVLNDRGQPLSPIDILK 231
Query: 224 GELLKHAKE--HEREEFVSRWNALSQKCSD---NDLTMETLFSWY 263
L++ K+ +R++F++ W+ L + C D+ +E F+ Y
Sbjct: 232 SSLMQEIKQDSEKRKDFITTWDKLVEACKSVEGIDIDLEDFFNMY 276
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 80.5 bits (197), Expect = 4e-17
Identities = 64/247 (25%), Positives = 117/247 (46%), Gaps = 23/247 (9%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDG 80
+ IPIYQR Y W +E CE+L DD+ +D+ +F GS +L + ++ ++ ++DG
Sbjct: 20 FVIPIYQRVYSWEKEQCEQLWDDIIKIGGNDKINGHFIGS-ILYVLDGNTPSSPLLIIDG 78
Query: 81 QQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQDA 140
QQRL+T LL L +D + + +E D+ ++K F I S ++ +D
Sbjct: 79 QQRLTTITLLCIALRSHLSDEVKREEIESYLIN-SDKDGDKK---FRLILSESD---KDT 131
Query: 141 LEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPNID 200
L D K ++N L +K I D +E ++ ++ + I+ +D
Sbjct: 132 LLSLIDKNKRKPSEPSVKIMENF-----KLFEKWISKNTDKLETIFKGLEKLMIVYIALD 186
Query: 201 K----ALRIFNVLNARGLPLNATDIFKGELLKHAKEHEREE--FVSRWNALSQKCSDNDL 254
K IF +N++G+ L TD+ + ++ + E+++ + W A+ + N
Sbjct: 187 KEKDDPQLIFESMNSKGIELTQTDLIRNYIIMETETEEKQKDFYNGYWRAMEEDFKQN-- 244
Query: 255 TMETLFS 261
ETLF+
Sbjct: 245 --ETLFN 249
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 72.4 bits (176), Expect = 1e-14
Identities = 59/216 (27%), Positives = 102/216 (46%), Gaps = 18/216 (8%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREG-DYFCGSLVLIAISKDSKATTYDVVD 79
Y IP YQR Y W ++N L +DL E +++G +F G++V +A ++D+K YD++D
Sbjct: 14 YSIPNYQRDYAWKDKNFRDLWEDLEEAIEYNKKGYGHFIGTMV-VAKNEDNK-KLYDIID 71
Query: 80 GQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQD 139
GQQR +T +L VL K E + + ++ L N + F+
Sbjct: 72 GQQRTTTIFMLLHVLVS--------KQYEEDKRETRKYLYQKGELKLEVASQNQSF-FKT 122
Query: 140 ALE-----HFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITI 194
LE + + + + K N + + D + K + +N+ +E L V + +
Sbjct: 123 LLEVAEKGNISHCEKDADTEGKQNLFEVLKAILDKISKLSEEEVNERLEVLLKMV-LMRL 181
Query: 195 ICPNIDKALRIFNVLNARGLPLNATDIFKGELLKHA 230
P+ KA+R F +N RG+PL D K L+ ++
Sbjct: 182 EEPDPGKAIRTFQSVNDRGVPLLLLDKLKSLLIYYS 217
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 67.0 bits (162), Expect = 5e-13
Identities = 63/245 (25%), Positives = 109/245 (43%), Gaps = 28/245 (11%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLV-LIAISKDSKA----TTY 75
+ IP+YQR Y W EENCEKLL D+ N +++ +F GS+ ++ + D K+ +
Sbjct: 19 FSIPVYQRNYTWEEENCEKLLQDI-VNISQNKK-THFMGSITYILHLIDDEKSLRQLQEF 76
Query: 76 DVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAE- 134
++DGQQR++T +LL K + + K ++ L + +RL I S+ E
Sbjct: 77 VIIDGQQRITTIMLLLKAIETKIQNEGIKKEIDGL------LNLSGQRLRLKPIKSDKEA 130
Query: 135 YDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITI 194
+D S KNN + K L +Y+ K IE +Y ++ I
Sbjct: 131 FDLVMQNRSHEIQGVSHIKNNYKFFTKE---LDNYISK------GYRIEEIYGAFLWLKI 181
Query: 195 ICPNI----DKALRIFNVLNARGLPLNATDIFKGELLK-HAKEHEREEFVSRWNALSQKC 249
+ + D +F +NA G+ L D+ + L+ +++ + + W L
Sbjct: 182 VAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSDNQNRLYNTYWVPLENWL 241
Query: 250 SDNDL 254
+ DL
Sbjct: 242 GEKDL 246
>ref|NP_223672.1| putative [Helicobacter pylori J99]
Length = 217
Score = 48.9 bits (115), Expect = 1e-07
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 21 YQIPIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDG 80
++IP YQR Y W + +DL + + Y SL L + + + + ++++DG
Sbjct: 15 FEIPSYQRGYAWQVRQWKDFWNDLEHVSKLGNKFHYM-HSLTLRGLENELEDSAFEIIDG 73
Query: 81 QQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDF--- 137
QQRL+T ++L +LA K +H + + E LS+ G N +
Sbjct: 74 QQRLATSLILLGLLA---------KTTKHKDPKYNSMNLE-PVLSYKYYGLNEAFGAIMG 123
Query: 138 -QDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKF-ITII 195
+ LE F S +KN + + K I ++ + + L + F + +
Sbjct: 124 EEKDLERFQTSFYAKNLIDAYAFFKEKI------SDTPMETLEKMFDVLTKKMLFSVAEL 177
Query: 196 CPNIDKALRIFNVLNARGLPLNATDIFKGEL 226
N F +N RG L+ ++FK L
Sbjct: 178 NDNRIDPFSSFETINNRGKDLSTLELFKNRL 208
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 31.6 bits (70), Expect = 0.023
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 20/159 (12%)
Query: 46 FNYEDDREGDYFCGSLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPK 105
F+ +D E F + + ++ DS D QQ + KV+ D YN D K
Sbjct: 327 FSLKDSEENRQFLANWIKFMLNIDS--------DNQQDNKASQSIDKVIRDTYNYMGDQK 378
Query: 106 NLEHLQEGWKDRHTERKRLSFNTI----GSNAEY-DFQDALEHFNDSQASKNKNNKNNYL 160
N +L E K+ + + FN I G + +FQD L+ N + N + N
Sbjct: 379 NQINLLEIAKNLGSSEQ--DFNEILKSQGEKIYFKNFQDCLDFSNSPLSVINMDAFANDK 436
Query: 161 KNAICLKDYLMKK---EIKNINDFIEWLYSNVKFITIIC 196
K + YL K E K N + YS +K T +C
Sbjct: 437 KLMGLIAMYLFHKLFFEAKEHNK--PFFYSLMKLKTTLC 473
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 31.2 bits (69), Expect = 0.030
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 27/204 (13%)
Query: 64 IAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHT-ERK 122
I I + + Y V+DGQQRL++ LY + L+ + + + E K
Sbjct: 98 IRIEQIKRDDLYIVLDGQQRLTS----------LYIGLKGTRTLKKKNARYDNPNAYEEK 147
Query: 123 RLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNY-------LKNAICLKDY-----L 170
RL N + +D E + A K +N+K ++ L++ + +Y L
Sbjct: 148 RLYLNLKHQPNMDNPEDNYEF--EFHAQKPENDKKHWWFKVGDILESESHVWNYADEHGL 205
Query: 171 MKKEIKNINDFIEWLYSN--VKFITIICPNIDKALRIFNVLNARGLPLNATDIFKGELLK 228
E+K + D ++ V F N++K L IF +N+ G+ L+ +D+ L
Sbjct: 206 KGNELKLLGDLHRAFHTKQLVSFFEETEKNLNKVLNIFIRVNSGGVKLSYSDLLMSILTA 265
Query: 229 HAKEHEREEFVSRWNALSQKCSDN 252
RE+ +AL K N
Sbjct: 266 SFSSDIREKMNELVDALKDKGFSN 289
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 26.9 bits (58), Expect = 0.57
Identities = 25/121 (20%), Positives = 50/121 (40%), Gaps = 16/121 (13%)
Query: 108 EHLQEGWKDRHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLK 167
E L++ W+ + +L I + D Q + S+ + + K+ +N + L
Sbjct: 345 EPLKQAWESEYEITTQL-VKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLN 403
Query: 168 DYLMK-----------KEIKNINDFIEWLYSNVKFITIICPNIDKALRIFNVLNARGLPL 216
+ M+ IK +++ EW+ ++V+F +C AL I A+ PL
Sbjct: 404 EKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVC----MALEIEEQPRAKSTPL 459
Query: 217 N 217
+
Sbjct: 460 S 460
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 26.6 bits (57), Expect = 0.75
Identities = 19/79 (24%), Positives = 30/79 (37%)
Query: 99 NDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNN 158
N + K+ + G +R T RK+ NAE + L H K N ++
Sbjct: 13 NSSENSKDHHEARAGAFERFTNRKKRFRENAQKNAESSNHETLSHHKKEHRPNKKPNNHH 72
Query: 159 YLKNAICLKDYLMKKEIKN 177
K+A K+E+ N
Sbjct: 73 KPKHASQKTRNYAKEELDN 91
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 25.4 bits (54), Expect = 1.7
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 21/126 (16%)
Query: 1 MAKIESND-SHLRGILKDELYYQIPIYQRPYQWTEENCEK--------LLDDLFFNYEDD 51
+A+++S S + I DE+Y+QIP Y+ E EK +L+ F E++
Sbjct: 56 LAEMQSRKLSKRQDITLDEIYHQIPKEFHSYKGVEIATEKEVLVPNLEMLELYRFAKENN 115
Query: 52 RE----GDYFCGSLVL--IAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDPK 105
+ D + VL I ISK T LS I+L K DL+ L +
Sbjct: 116 KRVIIVSDMYLPLEVLEDILISKGFDGYT------NFYLSNHIMLTKHSKDLFKHVLKQE 169
Query: 106 NLEHLQ 111
N+ + Q
Sbjct: 170 NITNTQ 175
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 381
Score = 25.4 bits (54), Expect = 1.7
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 138 QDALEHFNDSQASKNKNNKNNYLK--NAICLKDYLMKKEIKNINDFIEWL 185
+D LE+F+ NK + L+ N L+ Y ++KE K+ EW+
Sbjct: 48 EDLLENFS------NKKDMQELLELLNQFILQSYKVEKEFKDYKALYEWV 91
>ref|NP_222939.1| putative [Helicobacter pylori J99]
Length = 390
Score = 25.4 bits (54), Expect = 1.7
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Query: 2 AKIESNDSHLRGILKDELYYQI--PIYQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCG 59
A E ++ ++ +LK + Y PIYQ Y+ N ++FF YE G + G
Sbjct: 316 ANSEIFEASMQSLLKTDGVYSNHKPIYQEFYELNSHNGLYYQPNVFFAYESCALG-FRKG 374
Query: 60 SLVLIAISK 68
L+L SK
Sbjct: 375 GLILDNFSK 383
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 25.0 bits (53), Expect = 2.2
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 97 LYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNK 156
L N+ +D + + G K+ E +S +N++ L HFN++ ++N +
Sbjct: 110 LENNEIDARTFKPWDLGSKEASKENASMSEELTQNNSK------LSHFNENSIAQNSVGQ 163
Query: 157 NN 158
NN
Sbjct: 164 NN 165
>ref|NP_223186.1| putative [Helicobacter pylori J99]
Length = 283
Score = 25.0 bits (53), Expect = 2.2
Identities = 22/68 (32%), Positives = 30/68 (43%), Gaps = 7/68 (10%)
Query: 116 DRHTERKRLSFNTIGSNAE-YDFQDALEHFND---SQASKNKNNKNNY---LKNAICLKD 168
D ER R ++ N + Y F++ L+HFN QA K+ Y L N K
Sbjct: 39 DDWDERARNQWDETARNHKTYYFENGLDHFNQGQYKQAFKDFKLAQEYSIGLGNVYLAKM 98
Query: 169 YLMKKEIK 176
YL K +K
Sbjct: 99 YLEGKGVK 106
>ref|NP_223762.1| putative [Helicobacter pylori J99]
Length = 256
Score = 24.6 bits (52), Expect = 2.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 203 LRIFNVLNARGLPLNATDIFKGELLKHAKEHER 235
L +F+ L A L I+KGE + KE+ER
Sbjct: 16 LCLFSTLGAEHLEQKGNYIYKGEEAYNNKEYER 48
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 24.6 bits (52), Expect = 2.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 47 NYEDDREGDY--FCGSLVLIAISKDSKATTYDVVDGQQRLSTFILLAKVLADLYNDCLDP 104
N++++ G Y FC SL I K+S + +D L L + Y++ +
Sbjct: 47 NWKEENLGSYAVFCNSLSKEKILKESASECVVEIDESFVLKALDFYTPFLNEAYSNKMAH 106
Query: 105 KNLEHLQE 112
KN++ + E
Sbjct: 107 KNIQVVLE 114
>ref|NP_224106.1| TRANSALDOLASE [Helicobacter pylori J99]
Length = 316
Score = 24.3 bits (51), Expect = 3.7
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 153 KNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYS-NVKFITIICPNIDKALRIFNVLNA 211
K+ N Y+ ++ + +L IK+I++ + N + I P + A + + L
Sbjct: 86 KDPNNGYI--SLEIDPFLEDDAIKSIDEAKRLFKTLNRPNVMIKVPASESAFEVISALAQ 143
Query: 212 RGLPLNATDIFK----GELLKHAKEHEREE-----FVSRWN-----ALSQKCSDNDLTME 257
+P+N T +F GE+ + + R+ FVSR++ + Q M
Sbjct: 144 ASIPINVTLVFSPKIAGEIAQILAKEARKRAVISVFVSRFDKEIDPLVPQNLQAQSGIMN 203
Query: 258 TLFSWYNLSQSGN 270
+Y ++Q N
Sbjct: 204 ATECYYQINQHAN 216
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.3 bits (51), Expect = 3.7
Identities = 41/175 (23%), Positives = 70/175 (39%), Gaps = 27/175 (15%)
Query: 10 HLRGILKDELYYQIPIYQRPYQWTEENCE----KLLDDLFFNYEDDREGDYFCGSLVLIA 65
HL+ + K ELY + YQ+ + + +L+ L ++E + +G +
Sbjct: 333 HLKNMSKHELYELLGFYQKELDKKQNHSAFKNFAILNGLDRDFERETKG---------YS 383
Query: 66 ISKDSKATTYDVVDGQQRL---STFILLAKVLADL-------YNDCLDPKNLEHLQEGWK 115
+ K + + +RL ++ +LLA++ ++ YN +P L E K
Sbjct: 384 VLKKKEMLLNKLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALELSK 443
Query: 116 DRHTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKN-KNNKNNYLKNAICLKDY 169
D+ K N S +Y F LE F Q K N N Y + L+DY
Sbjct: 444 DKRPTLKTFK-NAYFSARKYQFM--LESFKTKQNDPTYKLNDNTYELVSKQLQDY 495
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 24.3 bits (51), Expect = 3.7
Identities = 25/101 (24%), Positives = 40/101 (38%), Gaps = 6/101 (5%)
Query: 85 STFILLAKVLADLYNDCLDPKNLE----HLQEGWKDRHTERKRLSFNTIGSNAEYDFQDA 140
S F A+V + L+N K L+ H+ +R + +FN + D
Sbjct: 161 SLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILD--PK 218
Query: 141 LEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDF 181
L+HF D+ A N N + + + L KK K + F
Sbjct: 219 LDHFKDALAKSNATQSNAQTFFILGINEILHKKTSKALKYF 259
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 23.9 bits (50), Expect = 4.8
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 3/42 (7%)
Query: 151 KNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFI 192
K N ++ L+NA + Y+ KK+I +I+DF+ Y N F+
Sbjct: 514 KIANGADSALQNASDYR-YMFKKDIVSIDDFLG--YKNNLFV 552
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 23.9 bits (50), Expect = 4.8
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
Query: 141 LEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFITIICPNID 200
++ FND+ ++K N LKN +++K++K I+D I N+K + + N D
Sbjct: 225 MQLFNDTSSAKLGQIAEN-LKNGGA--GAMLQKDVKTISDRIATYQENLKQLGGMLKNYD 281
Query: 201 K 201
+
Sbjct: 282 E 282
>ref|NP_222753.1| putative [Helicobacter pylori J99]
Length = 100
Score = 23.9 bits (50), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 110 LQEGWKDRHTERKRLSFNTIGSNAE 134
L +G+K RK L+FN +G+ A+
Sbjct: 75 LNDGYKAVEENRKNLAFNMLGNFAK 99
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 23.5 bits (49), Expect = 6.3
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
Query: 90 LAKVLADLYNDCLDPKNLEHLQEGWKDR 117
L KVL L+N+C LE+ +G KDR
Sbjct: 267 LKKVLPGLFNEC-----LENSLKGLKDR 289
>ref|NP_223512.1| putative [Helicobacter pylori J99]
Length = 174
Score = 23.5 bits (49), Expect = 6.3
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 145 NDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWL 185
+D A N KNN L LK + KN+ + I+W+
Sbjct: 133 SDMLAGLNAKVKNNLLLTQNPLKTPHSWIQCKNLKEMIDWI 173
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 23.1 bits (48), Expect = 8.3
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 79 DGQQRLSTFILLAKVLADLYNDCLDPKNLEHLQEGWKDRHTERKRLSFNTIGSNAEYDFQ 138
D +R S +L+ LADL+ PK + + F I N E F
Sbjct: 99 DFTKRFSKMVLVKYFLADLF-----PKYSKMVWSDVDVIFCNEFSADFLNIKENDENYFY 153
Query: 139 DALE----HFNDSQASKNKN--NKNNYLKNAICLKDYLMKKEIKNINDFIEWLYSNVKFI 192
LE H + N + K N+ + + + L E K DF +W + N+K +
Sbjct: 154 GVLEVEKHHMMEGFLFCNLDYQRKKNF---TLRMHELLKGNEAKGELDFTKWCWPNMKAL 210
Query: 193 TI 194
I
Sbjct: 211 GI 212
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.1 bits (48), Expect = 8.3
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 127 NTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDYLMKKEIKNINDFIEWLY 186
NTI S E DF+ L +A +N N+ LK++I L K D +
Sbjct: 248 NTIAS--EPDFRSRL-----LEAIQN----NDPLKDSIVGAQLLKDPTTKIFYDKFQLKI 296
Query: 187 SNVKFITIICPNIDKA-------LRIFNVLNARGLPLNA 218
S K + I+ + K+ L FNVL+++ + LNA
Sbjct: 297 SPKKVLEILENRLKKSIETTNETLNAFNVLDSQAIDLNA 335
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 23.1 bits (48), Expect = 8.3
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 26 YQRPYQWTEENCEKLLDDLFFNYEDDREGDYFCGSLVLIAIS 67
Y + ++ +EN + LD+L E+++E SL+++A++
Sbjct: 192 YNKRFKIKKENIQNRLDELISLSEEEKE------SLMIVAVA 227
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 23.1 bits (48), Expect = 8.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 223 KGELLKHAKEHEREEFVSRWNALSQKCSDNDLTMETLFSWYNLSQSGN 270
KG +LK KE EF++ + N L ++TL+ Y L + N
Sbjct: 109 KGRILKGFKEKFDLEFLNSQIKPERDFQFNYLGIKTLYDRYLLKDANN 156
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 23.1 bits (48), Expect = 8.3
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 118 HTERKRLSFNTIGSNAEYDFQDALEHFNDSQASKNKNNKNNYLKNAICLKDY---LMKKE 174
H ++ +++ + EY + A + ND + S K N+ ++ L DY LM E
Sbjct: 177 HVLKESVTYPEVFYKGEYIIEIAKKAHNDLEPSLFKENEETIIE---VLSDYAKDLMLLE 233
Query: 175 IKNINDFIE 183
IK D ++
Sbjct: 234 IKGNLDALD 242
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,219
Number of Sequences: 1491
Number of extensions: 15360
Number of successful extensions: 94
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 33
length of query: 271
length of database: 494,079
effective HSP length: 76
effective length of query: 195
effective length of database: 380,763
effective search space: 74248785
effective search space used: 74248785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)