BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646022|ref|NP_208203.1| hypothetical protein
[Helicobacter pylori 26695]
(308 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224025.1| putative [Helicobacter pylori J99] 202 1e-53
ref|NP_223676.1| putative [Helicobacter pylori J99] 189 1e-49
ref|NP_224024.1| putative [Helicobacter pylori J99] 80 7e-17
ref|NP_223675.1| putative [Helicobacter pylori J99] 80 7e-17
ref|NP_223994.1| putative [Helicobacter pylori J99] 27 0.52
ref|NP_222783.1| putative [Helicobacter pylori J99] 25 2.0
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 25 3.4
ref|NP_223252.1| putative [Helicobacter pylori J99] 24 4.4
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 24 5.7
ref|NP_223156.1| Outer membrane protein [Helicobacter pylor... 24 5.7
ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXON... 24 5.7
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 23 7.5
>ref|NP_224025.1| putative [Helicobacter pylori J99]
Length = 240
Score = 202 bits (513), Expect = 1e-53
Identities = 109/217 (50%), Positives = 143/217 (65%), Gaps = 12/217 (5%)
Query: 73 EKSGDDLLKNVKIVTSGQSVKDRASTPKE---KEDRFKLAFGFKTTDDKTSFEIIAEDYT 129
EKSG+DLLK+VK+VTSG SVKDR STPKE KEDRFKL F F D KT+F IAE
Sbjct: 12 EKSGEDLLKDVKVVTSGPSVKDRTSTPKEPKEKEDRFKLMFDFG--DVKTNFMAIAEGSV 69
Query: 130 LSERKSRLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMIDSRDEEKCEI 189
LSERK RLG L+SP+ + G+G A+ +I+ AL +A L H+D EW M+++R+ ++C
Sbjct: 70 LSERKGRLGQLMSPLVYRGNGFHASLVIMWALSFASQLKHHNDHEWAKMLENRNVDECWF 129
Query: 190 TTLDNLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLIC 249
T D++D LFC ++ YA+G +E + WA LPKN+ EA FVAQL+C
Sbjct: 130 ETFDHMDNTDLRLFCDILGAYAQGQEE------TLNLTKLWAVMLPKNQKEAYFVAQLLC 183
Query: 250 DGGINKYGLSCAGLTPGVLADNLWSYGMR-DEDYDEE 285
DGGIN+Y LSCAGLT +L D + G+ D +Y +E
Sbjct: 184 DGGINRYNLSCAGLTENLLKDVIPHIGLETDNEYLKE 220
>ref|NP_223676.1| putative [Helicobacter pylori J99]
Length = 218
Score = 189 bits (479), Expect = 1e-49
Identities = 103/210 (49%), Positives = 136/210 (64%), Gaps = 12/210 (5%)
Query: 79 LLKNVKIVTSGQSVKDRASTPKE---KEDRFKLAFGFKTTDDKTSFEIIAEDYTLSERKS 135
+LK+VK+VTSG SVKDR STPKE KEDRFKL F F D KT+F IAE LSERK
Sbjct: 1 MLKDVKVVTSGPSVKDRTSTPKEPKEKEDRFKLMFDFG--DVKTNFMAIAEGSVLSERKG 58
Query: 136 RLGALLSPMFFEGSGNQATAIILTALHYAKGLNKHSDAEWRAMIDSRDEEKCEITTLDNL 195
RLG L+SP+ + G+G A+ +I+ AL +A L H+D EW M+++R+ ++C T D++
Sbjct: 59 RLGQLMSPLVYRGNGFHASLVIMWALSFASQLKHHNDHEWAKMLENRNVDECWFETFDHM 118
Query: 196 DRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQLICDGGINK 255
D LFC ++ YA+G +E + WA LPKN+ EA FVAQL+CDGGIN+
Sbjct: 119 DNTDLRLFCDILGAYAQGQEE------TLNLTKLWAVMLPKNQKEAYFVAQLLCDGGINR 172
Query: 256 YGLSCAGLTPGVLADNLWSYGM-RDEDYDE 284
Y LSCAGLT +L D + G+ E+ DE
Sbjct: 173 YNLSCAGLTENLLKDIEVNLGLATHEEVDE 202
>ref|NP_224024.1| putative [Helicobacter pylori J99]
Length = 51
Score = 80.1 bits (196), Expect = 7e-17
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAF 50
MGFQNENKLKVGA VKATIN+KVVEAKVI +GFNRVTLRSEKG + F
Sbjct: 1 MGFQNENKLKVGASVKATINDKVVEAKVISIGFNRVTLRSEKGQRSHLRF 50
>ref|NP_223675.1| putative [Helicobacter pylori J99]
Length = 51
Score = 80.1 bits (196), Expect = 7e-17
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAF 50
MGFQNENKLKVGA VKATIN+KVVEAKVI +GFNRVTLRSEKG + F
Sbjct: 1 MGFQNENKLKVGASVKATINDKVVEAKVISIGFNRVTLRSEKGQRSHLRF 50
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 27.3 bits (59), Expect = 0.52
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 100 KEKEDRFKLAFGFKTTDDKTSFEIIAEDYTLSERKSRLGALLSPMFFEGSGNQATAIILT 159
KEKE K+ KT D E E+Y S+R L L + E S + +++ T
Sbjct: 29 KEKEFYHKMRRLEKTLD-----ESYQENYLYSKRLRELEGRLEGLSLEKSAKEDSSLKTT 83
Query: 160 ALHYAKGLNKHSDAEWRAMIDSRDEEKCEITTLDNLDRVGTTLFCGVIKEYAEGNKEFEK 219
H L + ++M RD + +I TL+N + + YA ++ EK
Sbjct: 84 LSHLYNQLQEIQ----KSMDKERDYLEEKIITLENKFK--------DMGHYAASDEVNEK 131
Query: 220 ELNDFSPDGFWAKYLPK----NKNEAMFVAQL 247
++ +G+ + K +K E F+ +
Sbjct: 132 QVLKMYQEGYSVDSISKEFKVSKGEVEFILNM 163
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 25.4 bits (54), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (50%), Gaps = 1/31 (3%)
Query: 203 FCGVIKEYAEGNKEFEKELNDFSPD-GFWAK 232
F IK Y + KE ++EL D D FW K
Sbjct: 286 FADKIKAYYKQKKEVKRELKDLQRDKEFWTK 316
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 24.6 bits (52), Expect = 3.4
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 211 AEGNKEFEKELNDFSPDGFWAKYLPKNKNEAMFVAQL 247
AE EFEK++NDF + F P A+F+A L
Sbjct: 256 AEDANEFEKKVNDFI-ERFQKYQYPIYYGNAIFLADL 291
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 24.3 bits (51), Expect = 4.4
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 66 EVATNHVEKSGDDLLKNVKIVTSGQSVKDRASTPKEKE 103
++ N+++ S DD L + +G K+R P KE
Sbjct: 654 DITLNNIDLSIDDFLDSKMPAIAGLFSKERKEKPSSKE 691
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 23.9 bits (50), Expect = 5.7
Identities = 27/94 (28%), Positives = 39/94 (40%), Gaps = 11/94 (11%)
Query: 1 MGFQNENKLKVGALVKATINNKVVEAKVIGVGFNRVTLRSEKGNEATYAFNSD-KFLKWF 59
+ +N+NKL + + E K G G + V K AF + K LK
Sbjct: 28 LSIENDNKLTLDTGKLKALLGDFSEIKEEGYGLDFVG----KKIALNQAFKKNHKILK-- 81
Query: 60 KEVPLNEVATNHVEKSGDDLLKNVKIVTSGQSVK 93
PLNE + H+ GD+ L +KI+ S K
Sbjct: 82 ---PLNESTSKHILIKGDN-LDALKILKQSYSEK 111
>ref|NP_223156.1| Outer membrane protein [Helicobacter pylori J99]
Length = 528
Score = 23.9 bits (50), Expect = 5.7
Identities = 11/39 (28%), Positives = 18/39 (45%)
Query: 194 NLDRVGTTLFCGVIKEYAEGNKEFEKELNDFSPDGFWAK 232
+L R T GV+ N +++ DF+P +W K
Sbjct: 75 HLGRGWTVNVGGVLGGQVYDNTRYDRWAKDFTPPSYWDK 113
>ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
[Helicobacter pylori J99]
Length = 516
Score = 23.9 bits (50), Expect = 5.7
Identities = 11/38 (28%), Positives = 21/38 (54%)
Query: 20 NNKVVEAKVIGVGFNRVTLRSEKGNEATYAFNSDKFLK 57
N +V+E K+I + + ++ + FN+D+FLK
Sbjct: 451 NLEVIEEKIIKESHQVLRFKDKECVKEAIYFNADRFLK 488
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 23.5 bits (49), Expect = 7.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 5 NENKLKVGALVKATINNKVVEAKVIGVG 32
NEN VGA+V + +NK++ G+G
Sbjct: 697 NENDFVVGAVVISDDSNKLLSVSENGLG 724
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,221
Number of Sequences: 1491
Number of extensions: 15835
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 13
length of query: 308
length of database: 494,079
effective HSP length: 77
effective length of query: 231
effective length of database: 379,272
effective search space: 87611832
effective search space used: 87611832
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)