BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646023|ref|NP_208204.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(148 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224026.1| putative [Helicobacter pylori J99] 294 6e-82
ref|NP_223581.1| GTP CYCLOHYDROLASE I [Helicobacter pylori ... 34 0.001
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 3.4
ref|NP_224022.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 22 5.8
ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylor... 22 7.5
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 22 7.5
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 22 7.5
>ref|NP_224026.1| putative [Helicobacter pylori J99]
Length = 148
Score = 294 bits (753), Expect = 6e-82
Identities = 143/148 (96%), Positives = 145/148 (97%)
Query: 1 MTPELNLKSLGAKTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
MTPE NLKSLGAKTPYIFEYNS LLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV
Sbjct: 1 MTPESNLKSLGAKTPYIFEYNSDLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGV 60
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVRLLEPKYLEVYGDFASR 120
IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLV+LLEPKYLEVYGDF SR
Sbjct: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLDLVQLLEPKYLEVYGDFVSR 120
Query: 121 GGIAIKPFVNYAIKEYQDFKEKRLLNAK 148
GGIAIKPFVNYAIKEYQDFKEKRLL+AK
Sbjct: 121 GGIAIKPFVNYAIKEYQDFKEKRLLDAK 148
>ref|NP_223581.1| GTP CYCLOHYDROLASE I [Helicobacter pylori J99]
Length = 180
Score = 34.3 bits (77), Expect = 0.001
Identities = 21/74 (28%), Positives = 32/74 (42%)
Query: 36 DPLITLECKEFTSLCPITSQPDFGVIFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCI 95
D +I + EF S C P FG I + YIPK+K+V ++ + Y E
Sbjct: 57 DEMIVAQNIEFYSTCEHHLLPFFGNISVGYIPKEKIVGISAIAKLIEIYSKRLQIQERLT 116
Query: 96 NTILLDLVRLLEPK 109
I ++EP+
Sbjct: 117 TQIAETFDEIIEPR 130
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 23.1 bits (48), Expect = 3.4
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 6/59 (10%)
Query: 62 FIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTILLD------LVRLLEPKYLEVY 114
++ K+K+V ++ + F Y N G F E + I+ D L LL K + Y
Sbjct: 1105 YLEDFEKEKIVYPETSQGAYFIYENSGIFLEKTVFMIVSDAYNLKLLTALLNSKLITFY 1163
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 22.3 bits (46), Expect = 5.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 64 RYIPKDKMVESKSLKLYLFSYRNHGSF 90
RY PK +K L+ YL S R+ F
Sbjct: 211 RYTPKQNTERAKKLQSYLESKRDFIGF 237
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 22.3 bits (46), Expect = 5.8
Identities = 9/38 (23%), Positives = 18/38 (46%)
Query: 61 IFIRYIPKDKMVESKSLKLYLFSYRNHGSFHESCINTI 98
+F+ Y+ M+ L L + +H +F +C+ I
Sbjct: 92 LFVVYLSMGAMLSPSLLPESLLTINHHSNFLNACLQLI 129
>ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylori J99]
Length = 233
Score = 21.9 bits (45), Expect = 7.5
Identities = 14/51 (27%), Positives = 18/51 (34%), Gaps = 7/51 (13%)
Query: 13 KTPYIFEYNSQLLEAFPNPNPNLDPLITLECKEFTSLCPITSQPDFGVIFI 63
K PY E + LEA +P T+ K C P + V I
Sbjct: 22 KKPYFLEIEKRYLEALKSPK-------TIFPKSSNLFCAFNLTPPYAVKII 65
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 21.9 bits (45), Expect = 7.5
Identities = 11/23 (47%), Positives = 12/23 (51%)
Query: 109 KYLEVYGDFASRGGIAIKPFVNY 131
KYL+ G S IAI P V Y
Sbjct: 32 KYLKAQGAKISGSDIAISPSVKY 54
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 21.9 bits (45), Expect = 7.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 91 HESCINTILLDLVRLLEPKYLEVYGDFASRGGIAIK 126
++S +NT + DL+R + + G A GGI ++
Sbjct: 1940 NDSGLNTAIKDLIRQKLGFWTGLVGGLAGLGGIDLQ 1975
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,921
Number of Sequences: 1491
Number of extensions: 7428
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 148
length of database: 494,079
effective HSP length: 70
effective length of query: 78
effective length of database: 389,709
effective search space: 30397302
effective search space used: 30397302
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)