BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646024|ref|NP_208205.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(113 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224027.1| putative [Helicobacter pylori J99] 223 1e-60
ref|NP_224109.1| putative [Helicobacter pylori J99] 25 0.42
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 25 0.55
ref|NP_223582.1| GERANYLTRANSTRANSFERASE [Helicobacter pylo... 25 0.71
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 25 0.71
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 24 1.2
ref|NP_223969.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 2.1
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 22 3.5
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 3.5
ref|NP_222783.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223243.1| putative [Helicobacter pylori J99] 22 6.0
ref|NP_224004.1| putative [Helicobacter pylori J99] 21 7.9
>ref|NP_224027.1| putative [Helicobacter pylori J99]
Length = 113
Score = 223 bits (567), Expect = 1e-60
Identities = 111/113 (98%), Positives = 111/113 (98%)
Query: 1 MNQRIETITALLDEKKAFDITHIDLSKTPYLVEDVIIATTLANKHALSLLDALKNTLKPL 60
MNQRIE ITALLDEKKAFDITHIDLSKTPYLVEDVIIATTLANKHALSLLDALKNTLKPL
Sbjct: 1 MNQRIEMITALLDEKKAFDITHIDLSKTPYLVEDVIIATTLANKHALSLLDALKNTLKPL 60
Query: 61 GEVFYQIDESNEEWIILDLGDLMIHLFTEECRKKFDLEGFLNAYKRGLPYQNA 113
GEVFYQIDESN EWIILDLGDLMIHLFTEECRKKFDLEGFLNAYKRGLPYQNA
Sbjct: 61 GEVFYQIDESNGEWIILDLGDLMIHLFTEECRKKFDLEGFLNAYKRGLPYQNA 113
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 25.4 bits (54), Expect = 0.42
Identities = 13/37 (35%), Positives = 20/37 (53%)
Query: 17 AFDITHIDLSKTPYLVEDVIIATTLANKHALSLLDAL 53
A + TH++ KT ++ T NK A+S+ DAL
Sbjct: 211 ALNTTHLETFKTLKNFRPKVLDTIYQNKPAVSITDAL 247
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 25.0 bits (53), Expect = 0.55
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 23 IDLSKTPYLVEDVIIATTLANKHALSLL----DALKNTLKPLGEVFYQIDESNE 72
I+LSK L ED+I+ + + + + DAL N + + E+F D+ +E
Sbjct: 189 IELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDE 242
>ref|NP_223582.1| GERANYLTRANSTRANSFERASE [Helicobacter pylori J99]
Length = 303
Score = 24.6 bits (52), Expect = 0.71
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 6 ETITALLDEKKAFDITHIDLSKTPYLVEDVIIATTLANKHALSLLDALKNTLKPLGEVFY 65
+ I DEK++ TH+D +K ++ ++ A+ +A +L + N L L +
Sbjct: 229 DIIDVTQDEKESGKTTHLDSAKNSFV---NLLGLKKASGYAQTLKTEILNDLNALEPTYL 285
Query: 66 QIDES 70
+ E+
Sbjct: 286 SLQEN 290
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 24.6 bits (52), Expect = 0.71
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 2 NQRIETITALLDE-KKAFDITH---IDLSKTPYL----VEDVIIATTLANKHALSLLDAL 53
N + E + L+ K AF + + I+L K Y+ + + + + N+ A L+D
Sbjct: 42 NTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLS 101
Query: 54 KNTLKPLGEVFYQIDESNEEWII 76
KN LK E +EW++
Sbjct: 102 KNILKDFQSFENFKQEVTKEWLL 124
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 23.9 bits (50), Expect = 1.2
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 49 LLDALKNTLKPLGEVFYQIDESNEEWII 76
L + +N LGE+ Q+ ++ +EW++
Sbjct: 807 LAEPNRNAGVSLGEILTQVSKNTKEWLV 834
>ref|NP_223969.1| putative [Helicobacter pylori J99]
Length = 228
Score = 23.1 bits (48), Expect = 2.1
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 17 AFDITHIDLSKTPYLVEDVIIATTLANK----HALSLLDALKNT 56
A I L + +V+I + L N +ALS+LD KNT
Sbjct: 54 AIQFVAITLLSAQASLMNVVIVSLLVNARQTCYALSMLDRFKNT 97
>ref|NP_222763.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 757
Score = 23.1 bits (48), Expect = 2.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 98 EGFLNAYKRGLP 109
E FLNA K+GLP
Sbjct: 56 ESFLNALKKGLP 67
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 22.3 bits (46), Expect = 3.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 71 NEEWI--------ILDLGDLMIHLFTEECRKKFDLEGFLNAYKRGLPY 110
N EWI L LG +M HL+T K + + + + R LPY
Sbjct: 255 NAEWIPIRPNTDVALMLG-MMHHLYTSNQYDKAFIAKYTDGFDRFLPY 301
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 22.3 bits (46), Expect = 3.5
Identities = 17/58 (29%), Positives = 25/58 (42%), Gaps = 6/58 (10%)
Query: 49 LLDALKNTLKPLGEVFYQIDE------SNEEWIILDLGDLMIHLFTEECRKKFDLEGF 100
LLDALK + L E+ +IDE EE + L ++ E+ + D F
Sbjct: 343 LLDALKERSQTLKELALKIDEVLTAPIEYEEKVFKKLNQALVMPLLEKFKLALDKTDF 400
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 21.9 bits (45), Expect = 4.6
Identities = 17/82 (20%), Positives = 34/82 (40%)
Query: 6 ETITALLDEKKAFDITHIDLSKTPYLVEDVIIATTLANKHALSLLDALKNTLKPLGEVFY 65
ET + D KA ++ K Y +D+I+ H L ++ L + + +F
Sbjct: 590 ETPLKMPDTLKANEMRLHLGKKVDYEQKDLIVEFESNESHLLVVIQDLNARIALMKLLFQ 649
Query: 66 QIDESNEEWIILDLGDLMIHLF 87
+ +N+E + + +I F
Sbjct: 650 NVKSANKELVFCNKEKRLIRSF 671
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 21.6 bits (44), Expect = 6.0
Identities = 9/32 (28%), Positives = 16/32 (49%)
Query: 43 NKHALSLLDALKNTLKPLGEVFYQIDESNEEW 74
N + L + N+++ + VFY + ES W
Sbjct: 276 NLYELLTQTSHNNSIQTIQHVFYIVSESLSSW 307
>ref|NP_224004.1| putative [Helicobacter pylori J99]
Length = 248
Score = 21.2 bits (43), Expect = 7.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 93 KKFDLEGFLNAYKR 106
+K L GFLNA+KR
Sbjct: 141 EKGRLNGFLNAHKR 154
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,451
Number of Sequences: 1491
Number of extensions: 4541
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 13
length of query: 113
length of database: 494,079
effective HSP length: 66
effective length of query: 47
effective length of database: 395,673
effective search space: 18596631
effective search space used: 18596631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)