BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646028|ref|NP_208210.1| flagellar biosynthetic
protein (fliQ) [Helicobacter pylori 26695]
(88 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224032.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 167 3e-44
ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 26 0.13
ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERME... 26 0.13
ref|NP_223686.1| putative [Helicobacter pylori J99] 25 0.28
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 24 0.62
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 24 0.62
ref|NP_223735.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_222881.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 22 3.1
ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTE... 22 3.1
ref|NP_223232.1| putative Inner membrane protein [Helicobac... 21 5.3
ref|NP_224203.1| ABC transporter, permease [Helicobacter py... 20 6.9
ref|NP_223337.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223623.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223230.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223192.1| cag island protein, DNA transfer protein [... 20 9.0
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 20 9.0
ref|NP_222758.1| DNA transformation compentancy [Helicobact... 20 9.0
>ref|NP_224032.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 88
Score = 167 bits (423), Expect = 3e-44
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGV 60
MESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGV
Sbjct: 1 MESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGV 60
Query: 61 LILTMPWMTNMLLDYTKTLIKLIPKIIG 88
LILTMPWMTNMLLDYTKTLIKLIPKIIG
Sbjct: 61 LILTMPWMTNMLLDYTKTLIKLIPKIIG 88
>ref|NP_223814.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 223
Score = 26.2 bits (56), Expect = 0.13
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 1 MESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQA 39
+E +K +E ++ TL+I+L + +VVG+L+ A
Sbjct: 5 LELDNLKRLLEGFETTLLIALSSAIISIVVGMLLGSLMA 43
>ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 237
Score = 26.2 bits (56), Expect = 0.13
Identities = 13/47 (27%), Positives = 26/47 (54%), Gaps = 4/47 (8%)
Query: 1 MESQLMKLAIETY----KITLMISLPVLLAGLVVGLLVSIFQATTQI 43
+ + ++L +E + K ISLP+ + ++GLL++I A +I
Sbjct: 16 LSKERLELLLEAFYPMLKAAFCISLPLAIISFILGLLIAIVVALIKI 62
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 25.0 bits (53), Expect = 0.28
Identities = 14/59 (23%), Positives = 31/59 (51%)
Query: 4 QLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGVLI 62
Q+ K+A+ + L++ L L+ L+ LL IF+ + +M ++ I++ + V +
Sbjct: 238 QVSKIALALMILALLLGLRKLITWLLALLLDRIFEIMQRNKKMHVNVQSSIVSPVSVFL 296
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 23.9 bits (50), Expect = 0.62
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 13 YKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVIGV 60
++ +I+ + L GLVV ++ QINE + ++P + +G+
Sbjct: 524 FRYAFLIASVLGLGGLVVAYKKLNWEFIPQINEGVIMYMPVTINGVGI 571
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 23.9 bits (50), Expect = 0.62
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 5 LMKLAIETYKITLMI------SLPVLLAGLVVGLLVSIFQATTQINEMTLSFVPKILAVI 58
+M + + Y + LM+ ++P LL L++ + ++ + N +L ++
Sbjct: 162 IMSASKDAYGLMLMVVFVMGLAIPFLLVALMLERALLFLKSLRKYNRAIEIVSGLVLILM 221
Query: 59 GVLILT--MPWMTNML 72
G+LI+T + +TN L
Sbjct: 222 GILIMTNSLESLTNFL 237
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 21.9 bits (45), Expect = 2.4
Identities = 18/67 (26%), Positives = 30/67 (43%), Gaps = 9/67 (13%)
Query: 5 LMKLAIETYKITLMISLPV-LLAGLVVGL--------LVSIFQATTQINEMTLSFVPKIL 55
L++L + + T+ LP+ A +GL L+ F +MT +FVP L
Sbjct: 47 LVQLFLYSLPGTIFFILPITFFAACALGLSRLSYDHELLVFFSLGVSPKKMTKAFVPLSL 106
Query: 56 AVIGVLI 62
V +L+
Sbjct: 107 LVSAILL 113
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.9 bits (45), Expect = 2.4
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 23 VLLAGLVVGLLVSIFQATTQINEMTLSFVPK-ILAVIGVLILTMPWMTNMLLDYTKTLIK 81
V+L LV+ + SIF ++ + + P +L G ++ ++ + L L
Sbjct: 88 VILLSLVINIFASIFYTPLVVSYLHQKYYPHVVLEEFGSILFSIKYFLKSLTFMLLFLAV 147
Query: 82 LIP 84
L P
Sbjct: 148 LTP 150
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 47 TLSFVPKILAVIGVLILTMPWMTNMLLDYTK 77
T++++ I V+ +LI+T MLLD +
Sbjct: 317 TIAYMGVIAVVVALLIITSFKKERMLLDINR 347
>ref|NP_223813.1| AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 217
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 14 KITLMISLPVLLAGLVVGLLVSI 36
K+TL IS +L L+VG L +I
Sbjct: 20 KLTLYISFFGILLSLLVGFLCAI 42
>ref|NP_223232.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 349
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 28 LVVGLLVSIFQATTQINEMTLSF 50
L+V + IF+ T +INE+ + F
Sbjct: 282 LIVFIKKRIFKTTLKINEILIFF 304
>ref|NP_224203.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 215
Score = 20.4 bits (41), Expect = 6.9
Identities = 10/48 (20%), Positives = 25/48 (51%)
Query: 1 MESQLMKLAIETYKITLMISLPVLLAGLVVGLLVSIFQATTQINEMTL 48
+ L++ +ET + + S ++ GL +G+L+ + + +N+ L
Sbjct: 2 ISQMLIQATLETLYMVFVASFLAVVFGLPLGVLLLVSKKGHLLNKPLL 49
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 18 MISLPVLLAGLVVGL 32
+I+ VLLAG +VGL
Sbjct: 198 IINKEVLLAGAIVGL 212
>ref|NP_223623.1| putative [Helicobacter pylori J99]
Length = 431
Score = 20.0 bits (40), Expect = 9.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 1 MESQLMKLAIETYKITLMISLPVLLA 26
+ES+L K +ET I L L +LA
Sbjct: 187 LESKLAKTNVETKLIDLEKMLDTMLA 212
>ref|NP_223230.1| putative [Helicobacter pylori J99]
Length = 215
Score = 20.0 bits (40), Expect = 9.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 15 ITLMISLPVLLAGLVVGLLVSIFQATT 41
I +++ L + L G+V GLLV+ TT
Sbjct: 116 ILVLLGLWMPLMGVVGGLLVAGMTITT 142
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 330
Score = 20.0 bits (40), Expect = 9.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 22 PVLLAGLVVGLLVSIFQATTQINEMTLSFVPKI 54
P+L + L G V I + +N+ T+S +I
Sbjct: 102 PILSSNLANGERVQIVLSPVTVNDETISISIRI 134
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 20.0 bits (40), Expect = 9.0
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 13 YKITLMISLPVLLAGLVVGLLVSIFQ 38
Y+++L+ + + L +++G+ + FQ
Sbjct: 137 YRVSLVFGILLTLFSVLIGVSLGAFQ 162
>ref|NP_222758.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 376
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 21 LPVLLAGLVVGLLVSIFQA 39
+P+LL+ L GLL+ I A
Sbjct: 278 VPLLLSTLTNGLLIGITSA 296
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.142 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,500
Number of Sequences: 1491
Number of extensions: 2299
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 88
length of database: 494,079
effective HSP length: 64
effective length of query: 24
effective length of database: 398,655
effective search space: 9567720
effective search space used: 9567720
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)