BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646032|ref|NP_208214.1| conserved hypothetical
protein [Helicobacter pylori 26695]
         (84 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224036.1|  putative [Helicobacter pylori J99]              164  4e-43
ref|NP_224077.1|  putative [Helicobacter pylori J99]               22  2.4
ref|NP_223017.1|  putative [Helicobacter pylori J99]               21  4.1
ref|NP_222941.1|  putative [Helicobacter pylori J99]               21  4.1
ref|NP_223402.1|  putative [Helicobacter pylori J99]               21  5.4
ref|NP_223639.1|  putative [Helicobacter pylori J99]               20  7.0
ref|NP_223685.1|  CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H...    20  9.2
ref|NP_223518.1|  TRANSCRIPTION ELONGATION FACTOR (TRANSCRIP...    20  9.2
ref|NP_223449.1|  TRIGGER FACTOR [Helicobacter pylori J99]         20  9.2

>ref|NP_224036.1| putative [Helicobacter pylori J99]
          Length = 84

 Score =  164 bits (414), Expect = 4e-43
 Identities = 80/84 (95%), Positives = 80/84 (95%)

Query: 1  MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEYTI 60
          MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAK SKEVK GD ISLHYLKGIEEYTI
Sbjct: 1  MRIDKFLQSVGLVKRRVLATDMCNVGAVWLNGSCAKPSKEVKTGDVISLHYLKGIEEYTI 60

Query: 61 LQIPALKNVPRKDTHLYIAPKTKE 84
          LQIP LKNVPRKDTHLYIAPKTKE
Sbjct: 61 LQIPTLKNVPRKDTHLYIAPKTKE 84



>ref|NP_224077.1| putative [Helicobacter pylori J99]
          Length = 377

 Score = 21.9 bits (45), Expect = 2.4
 Identities = 11/24 (45%), Positives = 14/24 (57%), Gaps = 3/24 (12%)

Query: 12 LVKRRVLATDMCNVGAVWLNGSCA 35
          LVK R L  ++CNV     N +CA
Sbjct: 70 LVKERSLNIELCNVSE---NNACA 90



>ref|NP_223017.1| putative [Helicobacter pylori J99]
          Length = 321

 Score = 21.2 bits (43), Expect = 4.1
 Identities = 7/27 (25%), Positives = 14/27 (50%)

Query: 15 RRVLATDMCNVGAVWLNGSCAKASKEV 41
          +R+L+   C    ++LN  C   +K +
Sbjct: 47 QRILSVQYCGEKMLYLNAGCVCCNKRL 73



>ref|NP_222941.1| putative [Helicobacter pylori J99]
          Length = 355

 Score = 21.2 bits (43), Expect = 4.1
 Identities = 10/36 (27%), Positives = 18/36 (49%), Gaps = 3/36 (8%)

Query: 23  CNVGAVWLNGSCAKASKEVKAGDTISLHYLKGIEEY 58
           C++G+     SC++       GDT+S    K ++ Y
Sbjct: 270 CDMGSAV---SCSRMGFMYSQGDTVSKDLRKALDNY 302



>ref|NP_223402.1| putative [Helicobacter pylori J99]
          Length = 400

 Score = 20.8 bits (42), Expect = 5.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 33  SCAKASKEVKAGDTISLHYLKGIEEYTILQIP 64
           S A+A K+++  D  +LH L+G     +  +P
Sbjct: 154 SIAQALKQIELLDLKNLHILQGDGRLVLESMP 185



>ref|NP_223639.1| putative [Helicobacter pylori J99]
          Length = 328

 Score = 20.4 bits (41), Expect = 7.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 3  IDKFLQSVGLVKRRVLATDM 22
          ++ FL+ VGL KR +L + M
Sbjct: 61 LNGFLKKVGLKKRDMLQSTM 80



>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
          Length = 389

 Score = 20.0 bits (40), Expect = 9.2
 Identities = 10/28 (35%), Positives = 13/28 (45%)

Query: 33  SCAKASKEVKAGDTISLHYLKGIEEYTI 60
           S     K +K    IS HY  G + Y+I
Sbjct: 95  SAKAVQKPLKESSNISKHYDLGNDFYSI 122



>ref|NP_223518.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
           [Helicobacter pylori J99]
          Length = 164

 Score = 20.0 bits (40), Expect = 9.2
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 35  AKASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYIAPKTK 83
           A A  +V  G TI +  L   +E++   + ++++ P K    + +P  K
Sbjct: 79  ALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLISFGSPIAK 127



>ref|NP_223449.1| TRIGGER FACTOR [Helicobacter pylori J99]
          Length = 451

 Score = 20.0 bits (40), Expect = 9.2
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 54  GIEEYTILQIPALKNVPRKDTHLYI 78
           G+E   ++  P      +KDTH  I
Sbjct: 83  GVETKDLIGSPNFTKFEKKDTHFEI 107



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,157
Number of Sequences: 1491
Number of extensions: 2633
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 84
length of database: 494,079
effective HSP length: 60
effective length of query: 24
effective length of database: 404,619
effective search space:  9710856
effective search space used:  9710856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)