BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646033|ref|NP_208215.1| hypothetical protein
[Helicobacter pylori 26695]
(206 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224037.1| putative [Helicobacter pylori J99] 384 e-108
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 26 0.67
ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [... 25 1.5
ref|NP_222840.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 23 5.6
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 22 9.6
ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99] 22 9.6
ref|NP_224175.1| putative [Helicobacter pylori J99] 22 9.6
ref|NP_223337.1| putative [Helicobacter pylori J99] 22 9.6
>ref|NP_224037.1| putative [Helicobacter pylori J99]
Length = 206
Score = 384 bits (985), Expect = e-108
Identities = 182/206 (88%), Positives = 192/206 (92%)
Query: 1 MKFQIMSLLATLLLASCLPPKGHHSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKK 60
MKFQI+SLL LLASCLPPKGHHSGLVN+YIAHQGQSVRTYWRKVDRGV+AKHNE LK+
Sbjct: 1 MKFQIVSLLLAFLLASCLPPKGHHSGLVNMYIAHQGQSVRTYWRKVDRGVVAKHNETLKE 60
Query: 61 DPKAKLKDPRGPLFMLGSERFMLLWKNRYALAKPQSFRLEPGFYYLDSFSVETQKGVLQS 120
+PK KLKDP+GPLFMLGS RFMLLWKNRY LAK QSF+LEPGFYYLDSFSVETQKG+LQS
Sbjct: 61 NPKIKLKDPKGPLFMLGSNRFMLLWKNRYTLAKVQSFKLEPGFYYLDSFSVETQKGILQS 120
Query: 121 APGYSYTKNGYDFKNNRPFFLAFEVKPDGKTILPSVELSLIKTPRGFLGVFLFDNNEKGT 180
APGYSYTKNGYDFKNNRPFFLAFEVKPD K +LPSVELSLIKTPRGFLGVFLFDNNEKG
Sbjct: 121 APGYSYTKNGYDFKNNRPFFLAFEVKPDSKIVLPSVELSLIKTPRGFLGVFLFDNNEKGA 180
Query: 181 NAKWIEGSLNLKLKNASFKDAWGLEQ 206
N WIEGSLNLKLKNASFKDAW LE+
Sbjct: 181 NTPWIEGSLNLKLKNASFKDAWELER 206
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 26.2 bits (56), Expect = 0.67
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
Query: 58 LKKDPKAKLKDPRGPLFMLGSERFMLLWKNRYA-LAKPQSFRLEPGFYY 105
LK +AKL + G + L +ER ++L K LA+ + F+ GF Y
Sbjct: 437 LKAKVRAKLLEIAGKIIELAAERNLILGKKMDTHLAELEIFKSHAGFEY 485
>ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [Helicobacter pylori J99]
Length = 332
Score = 25.0 bits (53), Expect = 1.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 172 LFDNNEKGTNAKWIEGSLNLKLKNASFKDAWGLEQ 206
+ +NEK NA I G + K+AWG E+
Sbjct: 284 ILKSNEKAKNACVIGGVFENPYPSVVLKNAWGFER 318
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 23.5 bits (49), Expect = 4.3
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 24 HSGLVNLYIAHQGQSVRTYWRKVDRGVIAKHNEALKKDPKA 64
+ G + I+ S + RKVD V+ K E +KD KA
Sbjct: 153 YDGYIKYLISMVRVSQKEKARKVDAIVLKKMEEQAEKDTKA 193
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 23.1 bits (48), Expect = 5.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 108 SFSVETQKGVLQSAPGYSYTKNGYDFKNNRPF 139
S + G+L PG YT Y+ K+ PF
Sbjct: 477 SDEINFNNGMLTITPGLRYTFLNYEKKDAPPF 508
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 22.3 bits (46), Expect = 9.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 100 EPGFYYLDSFSVETQKGVLQSAPGYS 125
E GF+ L ++E +KG + GYS
Sbjct: 13 ENGFHALKGVNLELKKGDILGVIGYS 38
>ref|NP_224189.1| putative peroxidase [Helicobacter pylori J99]
Length = 198
Score = 22.3 bits (46), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 30 LYIAHQGQSVRTYWRKVDRGVIAKH 54
L+ G+ WRK D+G+ A H
Sbjct: 160 LHFEEHGEVCPAGWRKGDKGMKATH 184
>ref|NP_224175.1| putative [Helicobacter pylori J99]
Length = 136
Score = 22.3 bits (46), Expect = 9.6
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 172 LFDNNEKGTNAK 183
+FDNN K NAK
Sbjct: 3 IFDNNNKSANAK 14
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 22.3 bits (46), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 183 KWIEGSLNLKLKNASFKDAWGL 204
KWI G LN K+ A +GL
Sbjct: 223 KWIMGLLNEKMHKALILGVYGL 244
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,731
Number of Sequences: 1491
Number of extensions: 10967
Number of successful extensions: 31
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 11
length of query: 206
length of database: 494,079
effective HSP length: 74
effective length of query: 132
effective length of database: 383,745
effective search space: 50654340
effective search space used: 50654340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)