BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646034|ref|NP_208216.1| hypothetical protein
[Helicobacter pylori 26695]
(75 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223169.1| putative PHOSPHOLIPASE A1 [Helicobacter py... 22 2.5
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 22 3.3
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 21 4.2
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 21 4.2
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 20 7.2
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 20 7.2
ref|NP_222754.1| putative [Helicobacter pylori J99] 20 7.2
ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter... 20 9.5
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 20 9.5
>ref|NP_223169.1| putative PHOSPHOLIPASE A1 [Helicobacter pylori J99]
Length = 355
Score = 21.9 bits (45), Expect = 2.5
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 4 QLVQFQGYGS--LGLRMGDKHHTLEL 27
QL+ + GYG+ + R G H L+L
Sbjct: 269 QLIDYMGYGNAKIDYRRGRHHFELQL 294
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 21.6 bits (44), Expect = 3.3
Identities = 15/66 (22%), Positives = 26/66 (38%)
Query: 2 LAQLVQFQGYGSLGLRMGDKHHTLELSTSVHGDAPSCSLKKLKSCESARVLQAKIPRGIF 61
L +V+F G ++ G+ +S GD + ++K+ S R + I I
Sbjct: 170 LHAIVRFIGISDANMQEGNFRCDANVSIRPKGDEKLYTRVEIKNLNSFRFIAKAIEYEIE 229
Query: 62 ESYVTW 67
V W
Sbjct: 230 RQSVAW 235
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 4 QLVQFQGYGSLGLRMGDKHHT 24
+LV+F G +L R GD ++T
Sbjct: 3129 KLVRFIGNNTLSYRKGDLYNT 3149
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 21.2 bits (43), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 8 FQGYGSLGLRMGDKHHTLELSTSV 31
FQ + GLR+ HH +EL +
Sbjct: 429 FQFLFNTGLRLQGIHHGIELGVKI 452
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 20.4 bits (41), Expect = 7.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 64 YVTWSADYVYRF 75
Y +W DYV+ F
Sbjct: 175 YYSWYVDYVFTF 186
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/24 (33%), Positives = 13/24 (53%)
Query: 8 FQGYGSLGLRMGDKHHTLELSTSV 31
FQ + G+R+G KH E+ +
Sbjct: 224 FQVLVNGGIRLGTKHQGFEIGLKI 247
>ref|NP_222754.1| putative [Helicobacter pylori J99]
Length = 335
Score = 20.4 bits (41), Expect = 7.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 11 YGSLGLRMGDKHHTL 25
YG +G+R+ ++H L
Sbjct: 170 YGDIGVRLEERHKRL 184
>ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter pylori J99]
Length = 344
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 5 LVQFQGYGSLGLRMGDKHHTLELSTSVHGD 34
L+ GY +GL++ HH + V D
Sbjct: 48 LLSSVGYAPVGLKIEGVHHEFDSLRGVTED 77
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 19 GDKHHTLELSTSVHGDAPSCSLKKL 43
GDK TL+++ S GD + + L
Sbjct: 396 GDKVETLKINASRLGDESAIKIPNL 420
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,613
Number of Sequences: 1491
Number of extensions: 2009
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 75
length of database: 494,079
effective HSP length: 51
effective length of query: 24
effective length of database: 418,038
effective search space: 10032912
effective search space used: 10032912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)