BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646035|ref|NP_208217.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223352.1| putative Outer membrane protein [Helicobac... 35 0.001
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 34 0.002
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 29 0.065
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 27 0.25
ref|NP_223856.1| putative role in outermembrane permeabilit... 27 0.42
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 26 0.55
ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori... 25 1.2
ref|NP_222764.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 25 1.6
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 24 2.1
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 24 2.1
ref|NP_222957.1| ABC transporter, permease [Helicobacter py... 24 2.7
ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori... 23 3.6
ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 23 4.7
ref|NP_223180.1| putative [Helicobacter pylori J99] 23 4.7
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 23 4.7
ref|NP_223972.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOU... 23 6.1
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 23 6.1
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 22 7.9
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 22 7.9
>ref|NP_223352.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 336
Score = 35.0 bits (79), Expect = 0.001
Identities = 29/115 (25%), Positives = 43/115 (37%), Gaps = 25/115 (21%)
Query: 54 FSWNLAYKDSFVLLRHYDFNFGGRLLERKDPST-ILNGFN---------------FKVGY 97
+ WN K+ F+ HY LL+ + S ++ GFN F+ GY
Sbjct: 171 YGWNTQLKNEFIFELHYQLLKKVPLLKTRFFSMELMPGFNVELGNARDYFQLGSLFRAGY 230
Query: 98 QYAAPVKIKKMGFGVRGGFQYSYKAGNYMEKDKYQQHLFGVPIGIISPVSIFNGG 152
A + K+ GG YS DK+ + F G P++IF G
Sbjct: 231 NLDADYGVNKVNTAFDGGMPYS---------DKFSIYFFAGAFGRFQPLNIFIQG 276
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 34.3 bits (77), Expect = 0.002
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 39 ADKSAFFAGLGYS-GMFSWNLAYKDSFVLLRHYDFNFGGRLLERKDPSTILNGFNFKVGY 97
AD+SAF+ GLGY G N + + F L S + NG +VGY
Sbjct: 44 ADRSAFYLGLGYQLGSIQHNSSNLNLSQRFNKSQIIFSDSLSPVFKNSYVSNGLGVQVGY 103
Query: 98 QYAAPVKIKKMGFGVRGGFQYSYKAGNY 125
++ + K FG R G Y A Y
Sbjct: 104 KWVGKHEETKW-FGFRWGLFYDLSASLY 130
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 29.3 bits (64), Expect = 0.065
Identities = 18/53 (33%), Positives = 24/53 (44%), Gaps = 5/53 (9%)
Query: 70 YDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVR--GGFQYSY 120
Y F LE S +NGF K+GY+ KK FG+R G + + Y
Sbjct: 512 YQMGFARNFLEHNSNSNNMNGFGVKMGYKQFFG---KKRMFGLRYYGFYDFGY 561
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 27.3 bits (59), Expect = 0.25
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 16/91 (17%)
Query: 69 HYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSYKAGNYMEK 128
H N GG+ R D S ++NG V++KK G +R F +
Sbjct: 5 HQYSNKGGKYENRYDVSVLVNGLPL-------VHVELKKRGVAIREAFN---------QI 48
Query: 129 DKYQQHLFGVPIGIISPVSIFNGGMITMSTY 159
+Y++ F G+ V IF T S Y
Sbjct: 49 KRYKRDSFSAEDGLFEFVQIFVISNGTSSKY 79
>ref|NP_223856.1| putative role in outermembrane permeability [Helicobacter pylori
J99]
Length = 766
Score = 26.6 bits (57), Expect = 0.42
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 55 SWNLAYKDSFVLLRHYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRG 114
SW++ + R + NF R + KD + N F+ QY ++
Sbjct: 239 SWDMTFTPQIRYKRGFGLNFEARYINSKDDRFLFNARYFRNYTQYVKRYDLRNQNI---Y 295
Query: 115 GFQYSYKAGNYMEK 128
GF++ + + ++K
Sbjct: 296 GFEFLSSSRDTLQK 309
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 26.2 bits (56), Expect = 0.55
Identities = 24/123 (19%), Positives = 51/123 (40%), Gaps = 22/123 (17%)
Query: 71 DFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSYKAGNYMEKDK 130
DF G +L K +++ GF K+ Y A + + + F + GF+ Y EK
Sbjct: 152 DFESGVKLA--KSRFSVIRGFGAKI---YRALIHLM-LDFNEKNGFEIIYTPALVNEKML 205
Query: 131 Y----------------QQHLFGVPIGIISPVSIFNGGMITMSTYSFFMDFYTMCMKMRS 174
+ ++L+ +P ++ +++N +I++ M +T C + +
Sbjct: 206 FGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLYNDTIISVENLPIKMTAHTPCFRSEA 265
Query: 175 FSS 177
S+
Sbjct: 266 GSA 268
>ref|NP_223559.1| PHOSPHOTRANSACETYLASE [Helicobacter pylori J99]
Length = 519
Score = 25.0 bits (53), Expect = 1.2
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 9 AIDESEPNKLVGKKVQEALAKEKAKAKNQRADKSAFFAGLGYSGMFSWNLAYKDSFVLLR 68
AID+ + +LV +E L + K ++ F LGY+ F N + +L +
Sbjct: 59 AIDKQKALELVSTAQEELLFETILKRYDELQSTHDFVINLGYAPKFFLNALLDLNTILAK 118
Query: 69 H 69
H
Sbjct: 119 H 119
>ref|NP_222764.1| putative [Helicobacter pylori J99]
Length = 330
Score = 25.0 bits (53), Expect = 1.2
Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 2/61 (3%)
Query: 66 LLRHYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSYKAGNY 125
+L DF F G L K PS + N NFK+ + +K M + + GG S AG+
Sbjct: 95 VLECLDFGFNGWGL--KYPSNLDNQVNFKLKHLGFLKHPLKTMPYILEGGSIESDGAGSI 152
Query: 126 M 126
+
Sbjct: 153 L 153
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 24.6 bits (52), Expect = 1.6
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 6/62 (9%)
Query: 25 EALAKEKAKAKNQRADKSAFFAGLGY-----SGMFSWNLAYKDSFVLLRHYDFNFGGRLL 79
EA EK+K K + AD++ F+ G+GY + FS + K F+ + GG+ +
Sbjct: 22 EAELDEKSK-KPKFADRNTFYLGVGYQLSAINTSFSTSSIDKSYFMTGNGFGVVLGGKFV 80
Query: 80 ER 81
+
Sbjct: 81 AK 82
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 24.3 bits (51), Expect = 2.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 85 STILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYS 119
+ ILNGF KVGY+ K + +G G F Y+
Sbjct: 349 TNILNGFYTKVGYKQFFGKK-RNIGLRYYGFFSYN 382
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 24.3 bits (51), Expect = 2.1
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 88 LNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSYKAGNYMEKDKY---------QQHLFGV 138
+NGF F VGY++ K + G G F ++ Y + Y Q +FG
Sbjct: 110 INGFGFVVGYKHFFK-KAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGY 168
Query: 139 PIG--IISPVSIFN 150
G ++ +IFN
Sbjct: 169 GAGTDVLFNPAIFN 182
>ref|NP_222957.1| ABC transporter, permease [Helicobacter pylori J99]
Length = 338
Score = 23.9 bits (50), Expect = 2.7
Identities = 13/70 (18%), Positives = 30/70 (42%)
Query: 44 FFAGLGYSGMFSWNLAYKDSFVLLRHYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPV 103
FF Y+ + N KD+F++ +++ +++ P+ F +G A
Sbjct: 69 FFTPTDYNDPYVQNTLLKDAFIIHALIPYSYDTIIMDLDSPAPTPPSFKHLLGTDDQARD 128
Query: 104 KIKKMGFGVR 113
+ ++ +G R
Sbjct: 129 VLARLVYGYR 138
>ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 265
Score = 23.5 bits (49), Expect = 3.6
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 14 EPNKLVGKKVQEALAKEKAKAKNQRADKSAFFAGLGY 50
E +K+ GK+ +E + KE+ + + FA +GY
Sbjct: 191 EVDKIFGKEYREVVGKEQRDSARVDEKDTFNFAKIGY 227
>ref|NP_223989.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 359
Score = 23.1 bits (48), Expect = 4.7
Identities = 7/23 (30%), Positives = 15/23 (64%)
Query: 118 YSYKAGNYMEKDKYQQHLFGVPI 140
++YK Y+ DK ++ ++ +PI
Sbjct: 153 FNYKTMKYLNNDKQEKSVWQIPI 175
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 45 FAGLGYSGMFSWNLAYKDSFVLLRHYDFNFGGRLLER 81
F L F N +KDSF+ + Y F LER
Sbjct: 395 FGSLKGKQRFPNNDEFKDSFITIDFYKFKKNKYFLER 431
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 69 HYDFNFGGRLLERKDPSTILNGFNFKVGYQYAAPVKIKKMGFGVRGGF 116
H + +F G L D ++ +N F + VG+ K G+ G F
Sbjct: 109 HANLSFVGSKLGIMDGASQVNNFTYGVGFDALYNFYESKEGYNTAGLF 156
>ref|NP_223972.1| putative TRNA
(5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
[Helicobacter pylori J99]
Length = 360
Score = 22.7 bits (47), Expect = 6.1
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 2/32 (6%)
Query: 10 IDESEPNKLVGKKVQEALAKEKAKAKNQRADK 41
ID + +VGKK E LA KAKN+ K
Sbjct: 270 IDAKKNELIVGKK--EDLATHSLKAKNKSLTK 299
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 22.7 bits (47), Expect = 6.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
Query: 66 LLRHYDFNFGGRLLERKDPST-----ILNGFNFKVGYQYAAPVKIKKMGFGVRGGFQYSY 120
+L++YD + L + P T ++NGF +VGY+ K K +G F Y +
Sbjct: 276 MLKNYDEPY----LPQFGPGTSSQHGVINGFGIQVGYKQFFGSK-KNIGLRYYAFFDYGF 330
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 22.3 bits (46), Expect = 7.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 124 NYMEKDKYQQH 134
NY+EK+ Y+QH
Sbjct: 246 NYLEKEIYEQH 256
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 22.3 bits (46), Expect = 7.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 123 GNYMEKDKYQQHLFGVPIGIISPVSIFNGGMITMSTYSFFMDFYTMCMK 171
G+ + KD + + I + +S F+ G+++ S Y F FYT K
Sbjct: 129 GDSLNKD-LRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQK 176
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.140 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 207,439
Number of Sequences: 1491
Number of extensions: 10235
Number of successful extensions: 39
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 20
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)