BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646036|ref|NP_208218.1| histidine-rich, metal
binding polypeptide (hpn) [Helicobacter pylori 26695]
(60 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224038.1| putative histidine-rich metal-binding prot... 160 6e-42
ref|NP_224039.1| putative histidine and glutamine-rich meta... 74 8e-16
ref|NP_223376.1| putative [Helicobacter pylori J99] 28 0.037
ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99] 25 0.24
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 23 1.5
ref|NP_223631.1| GTPase in circumferential ring formation [... 22 2.0
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 22 2.0
ref|NP_224041.1| putative [Helicobacter pylori J99] 21 4.5
ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMER... 21 4.5
ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pyl... 21 5.8
ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [... 21 5.8
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 20 10.0
>ref|NP_224038.1| putative histidine-rich metal-binding protein [Helicobacter
pylori J99]
Length = 60
Score = 160 bits (404), Expect = 6e-42
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MAHHEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHHE 60
MAHHEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHHE
Sbjct: 1 MAHHEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHHE 60
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 73.6 bits (179), Expect = 8e-16
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 1 MAHHEEQH---------GGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQE 51
MAHHE+QH HHHHHH HHHHY+GGEHHHH+ H E+ ++ H Q+
Sbjct: 1 MAHHEQQHQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQ----QAEQHAQQ 56
Query: 52 EGCCHGHHE 60
+ H +
Sbjct: 57 QQQQQAHQQ 65
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 28.1 bits (61), Expect = 0.037
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 11 HHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSH 48
H H H H HG +H H H+ SD H
Sbjct: 115 HGKKHKHDKHGKKHGKKHDKDHDDKDHDHHDEDHSDKH 152
Score = 26.6 bits (57), Expect = 0.11
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 1 MAHHEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEE 52
M ++ G H H H HG +H H H ++ HH E+
Sbjct: 101 MEDMDDDFGLRSCKHGKKHKHDKHGKKHGKKHDKDHDDK-----DHDHHDED 147
Score = 25.8 bits (55), Expect = 0.18
Identities = 11/34 (32%), Positives = 14/34 (40%), Gaps = 5/34 (14%)
Query: 4 HEEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHH 37
H ++HG H H H +HH HS H
Sbjct: 124 HGKKHGKKHDKDHDDKDH-----DHHDEDHSDKH 152
>ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99]
Length = 118
Score = 25.4 bits (54), Expect = 0.24
Identities = 9/22 (40%), Positives = 11/22 (49%), Gaps = 4/22 (18%)
Query: 41 CCSTSDSHH----QEEGCCHGH 58
CC T + H + E CCH H
Sbjct: 94 CCHTGNHDHKHAKEHEACCHDH 115
Score = 22.7 bits (47), Expect = 1.5
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 28 HHHHHHSSHHEEGCCSTSDSH 48
+H H H+ H E CC H
Sbjct: 99 NHDHKHAKEH-EACCHDHKKH 118
Score = 21.2 bits (43), Expect = 4.5
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 6/29 (20%)
Query: 8 HGGHHHHHHHTHHHHYHGGEHHHHHHSSH 36
H G+H H H H E H H H
Sbjct: 96 HTGNHDHKHAKEH------EACCHDHKKH 118
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 22.7 bits (47), Expect = 1.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 5 EEQHGGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQ 50
E+ G H H +Y G ++H S E+GC H+Q
Sbjct: 317 EDGTGAVHTAPGHGEEDYYLGLKYHLEVLMSVDEKGCYDEGIIHNQ 362
>ref|NP_223631.1| GTPase in circumferential ring formation [Helicobacter pylori J99]
Length = 385
Score = 22.3 bits (46), Expect = 2.0
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 27 EHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
EHH + + + C D HQ+ G H
Sbjct: 283 EHHPDYPMMAYSQACDFIQDQAHQDVDVKFGQH 315
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 22.3 bits (46), Expect = 2.0
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 16 HHTHHHHYHGGEHHHHHHSSHHEEGCCSTS 45
HH H + +++H + HH C+ S
Sbjct: 68 HHKVLHDRNEKWYYNHQNKLHHNHIACAAS 97
Score = 21.2 bits (43), Expect = 4.5
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 4 HEEQHGGHHHHHHHTHHHH 22
H+ +++H + HH+H
Sbjct: 73 HDRNEKWYYNHQNKLHHNH 91
Score = 21.2 bits (43), Expect = 4.5
Identities = 7/32 (21%), Positives = 14/32 (42%)
Query: 15 HHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSD 46
HH H ++H + H+ C +++D
Sbjct: 68 HHKVLHDRNEKWYYNHQNKLHHNHIACAASAD 99
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 21.2 bits (43), Expect = 4.5
Identities = 9/40 (22%), Positives = 14/40 (34%)
Query: 14 HHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEG 53
HH H + HH H+S +++ EG
Sbjct: 57 HHKKEHRPNKKPNNHHKPKHASQKTRNYAKEELDNNKVEG 96
>ref|NP_223769.1| FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 185
Score = 21.2 bits (43), Expect = 4.5
Identities = 8/13 (61%), Positives = 8/13 (61%), Gaps = 1/13 (7%)
Query: 47 SHHQE-EGCCHGH 58
SHH GCC GH
Sbjct: 155 SHHDSGTGCCGGH 167
>ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pylori J99]
Length = 142
Score = 20.8 bits (42), Expect = 5.8
Identities = 7/21 (33%), Positives = 8/21 (37%)
Query: 12 HHHHHHTHHHHYHGGEHHHHH 32
H HTH HH + H
Sbjct: 120 HEKTEHTHSHHAEEAKSTESH 140
>ref|NP_223011.1| GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE [Helicobacter pylori J99]
Length = 430
Score = 20.8 bits (42), Expect = 5.8
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 43 STSDSHHQEEGCCHGHHE 60
S D + EGC HGH +
Sbjct: 132 SQKDDLIKFEGCYHGHSD 149
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 20.0 bits (40), Expect = 10.0
Identities = 7/16 (43%), Positives = 9/16 (55%)
Query: 2 AHHEEQHGGHHHHHHH 17
AH + + GG H HH
Sbjct: 367 AHWKYKAGGVDHEEHH 382
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.132 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,153
Number of Sequences: 1491
Number of extensions: 2242
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 60
length of database: 494,079
effective HSP length: 36
effective length of query: 24
effective length of database: 440,403
effective search space: 10569672
effective search space used: 10569672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)