BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646041|ref|NP_208223.1| histidine and
glutamine-rich protein [Helicobacter pylori 26695]
(72 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224039.1| putative histidine and glutamine-rich meta... 154 2e-40
ref|NP_224038.1| putative histidine-rich metal-binding prot... 72 2e-15
ref|NP_223830.1| putative [Helicobacter pylori J99] 30 0.012
ref|NP_223773.1| putative [Helicobacter pylori J99] 30 0.012
ref|NP_223645.1| putative [Helicobacter pylori J99] 28 0.027
ref|NP_224041.1| putative [Helicobacter pylori J99] 26 0.13
ref|NP_223889.1| putative [Helicobacter pylori J99] 25 0.39
ref|NP_223639.1| putative [Helicobacter pylori J99] 24 0.51
ref|NP_222831.1| putative [Helicobacter pylori J99] 24 0.66
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 23 0.86
ref|NP_223513.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 23 1.5
ref|NP_223616.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 22 3.3
ref|NP_223025.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_223754.1| Pyruvate ferrodoxin oxidoreductase [Helico... 21 4.3
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 21 4.3
ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pyl... 21 5.6
ref|NP_223770.1| putative [Helicobacter pylori J99] 21 5.6
ref|NP_223761.1| putative [Helicobacter pylori J99] 21 5.6
ref|NP_223731.1| putative [Helicobacter pylori J99] 21 5.6
ref|NP_223376.1| putative [Helicobacter pylori J99] 21 5.6
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 21 5.6
ref|NP_223788.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 20 7.3
ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99] 20 7.3
ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99] 20 9.6
>ref|NP_224039.1| putative histidine and glutamine-rich metal-binding protein
[Helicobacter pylori J99]
Length = 77
Score = 154 bits (390), Expect = 2e-40
Identities = 70/77 (90%), Positives = 70/77 (90%), Gaps = 5/77 (6%)
Query: 1 MAHHEQQ-----QQQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQ 55
MAHHEQQ QQQQANSQHHHHHH HHHHYYGGEHHHHNAQQHAEQQAEQ AQQQQQQ
Sbjct: 1 MAHHEQQHQAQQQQQQANSQHHHHHHVHHHHYYGGEHHHHNAQQHAEQQAEQHAQQQQQQ 60
Query: 56 QAHQQQQQKAQQQNQQY 72
QAHQQQQQKAQQQNQQY
Sbjct: 61 QAHQQQQQKAQQQNQQY 77
>ref|NP_224038.1| putative histidine-rich metal-binding protein [Helicobacter
pylori J99]
Length = 60
Score = 72.0 bits (175), Expect = 2e-15
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 1 MAHHEQQQQQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQQ 56
MAHHE+Q HHHHHH HHHHY+GGEHHHH+ H E+ + Q++
Sbjct: 1 MAHHEEQH----GGHHHHHHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEE 52
Score = 27.7 bits (60), Expect = 0.046
Identities = 11/39 (28%), Positives = 16/39 (40%), Gaps = 1/39 (2%)
Query: 22 AHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQQAHQQ 60
AHH +GG HHHH+ H + H++
Sbjct: 2 AHHEEQHGG-HHHHHHHTHHHHYHGGEHHHHHHSSHHEE 39
Score = 25.4 bits (54), Expect = 0.23
Identities = 12/41 (29%), Positives = 14/41 (33%), Gaps = 8/41 (19%)
Query: 3 HHEQQQQQQANSQHHHHHHAH--------HHHYYGGEHHHH 35
HH + + HH HH HH G H HH
Sbjct: 19 HHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
Score = 24.6 bits (52), Expect = 0.39
Identities = 11/45 (24%), Positives = 12/45 (26%), Gaps = 21/45 (46%)
Query: 3 HHEQQQQQQANSQHHHHHH---------------------AHHHH 26
HH +HHHHHH H HH
Sbjct: 15 HHHTHHHHYHGGEHHHHHHSSHHEEGCCSTSDSHHQEEGCCHGHH 59
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 29.6 bits (65), Expect = 0.012
Identities = 16/69 (23%), Positives = 36/69 (51%), Gaps = 2/69 (2%)
Query: 5 EQQQQQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQ--QQQQQAHQQQQ 62
+Q +++ A +Q + + G E + E+Q +Q +Q +Q++Q +Q++
Sbjct: 97 DQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEK 156
Query: 63 QKAQQQNQQ 71
QK +Q+ Q+
Sbjct: 157 QKTEQEKQK 165
Score = 23.5 bits (49), Expect = 0.86
Identities = 12/67 (17%), Positives = 27/67 (39%)
Query: 5 EQQQQQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQK 64
E +Q++Q Q + +Q EQ+ ++ + + Q +Q+Q+
Sbjct: 123 ELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQ 182
Query: 65 AQQQNQQ 71
+Q +Q
Sbjct: 183 KTEQEKQ 189
Score = 20.8 bits (42), Expect = 5.6
Identities = 13/67 (19%), Positives = 26/67 (38%)
Query: 5 EQQQQQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQK 64
E+Q+ +Q + + N Q EQ+ ++ Q++Q+ Q+
Sbjct: 141 EKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVN 200
Query: 65 AQQQNQQ 71
+QN Q
Sbjct: 201 KAEQNCQ 207
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 29.6 bits (65), Expect = 0.012
Identities = 11/29 (37%), Positives = 22/29 (74%)
Query: 43 QQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
Q+ EQ+ +Q++Q++ +QQ+ K Q+NQ+
Sbjct: 109 QKDEQKNEQEEQRRLREQQRLKQNQENQE 137
Score = 24.3 bits (51), Expect = 0.51
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 38 QQHAEQQAEQQAQQQQQQQAHQQQQQ--KAQQQN 69
+Q EQ+ +++ ++QQ+ + +Q+ Q+ K QQN
Sbjct: 112 EQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQN 145
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 28.5 bits (62), Expect = 0.027
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 35 HNAQQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
+NAQ EQ A++Q Q+Q Q Q+Q Q+Q Q
Sbjct: 358 NNAQ---EQTAQEQTTQEQTTQEQTTQEQTTQEQTTQ 391
Score = 26.9 bits (58), Expect = 0.078
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 38 QQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
Q EQ ++Q Q+Q Q Q+Q Q+Q+ Q
Sbjct: 373 QTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQ 406
Score = 26.6 bits (57), Expect = 0.10
Identities = 12/34 (35%), Positives = 17/34 (49%)
Query: 38 QQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
Q EQ ++Q Q+Q Q Q+Q Q+Q Q
Sbjct: 368 QTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQ 401
Score = 23.1 bits (48), Expect = 1.1
Identities = 10/30 (33%), Positives = 15/30 (49%)
Query: 38 QQHAEQQAEQQAQQQQQQQAHQQQQQKAQQ 67
Q EQ ++Q Q+Q Q Q+Q Q+
Sbjct: 378 QTTQEQTTQEQTTQEQTTQEQTTQEQDTQE 407
Score = 22.7 bits (47), Expect = 1.5
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 38 QQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQN 69
+Q ++Q Q+ Q+Q Q Q++ Q+N
Sbjct: 377 EQTTQEQTTQEQTTQEQTTQEQTTQEQDTQEN 408
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 38 QQHAEQQA--EQQAQQQQQQQAHQQQQQKAQQQNQQ 71
+Q ++Q EQ Q+Q Q+ Q+Q +Q Q+
Sbjct: 372 EQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQE 407
Score = 20.4 bits (41), Expect = 7.3
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 42 EQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
+ E Q+Q Q Q+Q Q+Q Q
Sbjct: 352 DNSVELNNAQEQTAQEQTTQEQTTQEQTTQ 381
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 26.2 bits (56), Expect = 0.13
Identities = 11/49 (22%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Query: 7 QQQQQANSQHHHHHHAHHH---HYYGGEHHHHNAQQHAEQQAEQQAQQQ 52
++ Q N++ +H HH H + ++H+ +HA Q+ A+++
Sbjct: 40 RENAQKNAESSNHETLSHHKKEHRPNKKPNNHHKPKHASQKTRNYAKEE 88
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 24.6 bits (52), Expect = 0.39
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 38 QQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
+Q +Q+ +Q+ +Q+Q+++ +Q + QN Q
Sbjct: 111 KQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQ 144
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 0.51
Identities = 9/38 (23%), Positives = 24/38 (62%)
Query: 31 EHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQ 68
E + + ++H + +A + + ++Q +A ++QQK Q++
Sbjct: 21 EKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQRE 58
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 23.9 bits (50), Expect = 0.66
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 5 EQQQQQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQK 64
EQ++Q+ S+ + G E + + E+Q +Q +Q+ + + +QQK
Sbjct: 151 EQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSEIELEQQK 210
Query: 65 AQQQNQQ 71
+ N Q
Sbjct: 211 QKTINTQ 217
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 23.5 bits (49), Expect = 0.86
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 28 YGGEHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQ 62
YGG+ + N Q Q QQAQQ+Q+ +Q +Q
Sbjct: 428 YGGQLNGANNQ--TPQLTPQQAQQEQKVIMNQLEQ 460
>ref|NP_223513.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.1 bits (48), Expect = 1.1
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 4 HEQQQQQQANSQHHHHHHAHH 24
H + Q A Q H H HH
Sbjct: 225 HAMRHQNNATPQQEGHFHDHH 245
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 22.7 bits (47), Expect = 1.5
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 1 MAHHEQQQQQQANSQHHHHHHAHHHH 26
++HH+ + ++H + HH+H
Sbjct: 66 LSHHKVLHDRNEKWYYNHQNKLHHNH 91
>ref|NP_223616.1| putative [Helicobacter pylori J99]
Length = 244
Score = 21.9 bits (45), Expect = 2.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 51 QQQQQQAHQQQQQKAQ 66
QQ Q H Q Q KAQ
Sbjct: 213 QQDMQNLHNQAQNKAQ 228
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 21.6 bits (44), Expect = 3.3
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 43 QQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
++ E+Q + ++++ ++Q QKAQ+ ++
Sbjct: 139 KELEEQKKALEKEKEAKEQAQKAQKDKRE 167
Score = 20.8 bits (42), Expect = 5.6
Identities = 6/30 (20%), Positives = 20/30 (66%)
Query: 42 EQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
EQ+ + +++ ++QA + Q+ K +++ ++
Sbjct: 143 EQKKALEKEKEAKEQAQKAQKDKREKRKEE 172
Score = 20.0 bits (40), Expect = 9.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 33 HHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQ 63
++ N + +QQ E + Q ++ + Q+Q Q
Sbjct: 195 NNKNLSELIKQQRENELDQMERLEDMQEQAQ 225
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 21.6 bits (44), Expect = 3.3
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 42 EQQAEQQAQQQQQQQAHQQQQQKAQ 66
E+ EQ+ +++ Q+ +++Q+K Q
Sbjct: 243 EETQEQEPIKEETQEIKEEKQEKTQ 267
>ref|NP_223754.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 407
Score = 21.2 bits (43), Expect = 4.3
Identities = 7/16 (43%), Positives = 9/16 (55%)
Query: 11 QANSQHHHHHHAHHHH 26
QA + H+ H A HH
Sbjct: 218 QAEEEWHYEHKAQLHH 233
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.2 bits (43), Expect = 4.3
Identities = 11/36 (30%), Positives = 17/36 (46%)
Query: 36 NAQQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQNQQ 71
N+ +QA QAQ+Q+QQ Q + +Q
Sbjct: 518 NSTTGFNEQAFTQAQKQEQQDEQALQNDENAFNTEQ 553
>ref|NP_223885.1| 30S RIBOSOMAL PROTEIN S6 [Helicobacter pylori J99]
Length = 142
Score = 20.8 bits (42), Expect = 5.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 7 QQQQQANSQHHHHHHAHHHH 26
++ A +H H H HH
Sbjct: 111 KKPSHAKEKHEKTEHTHSHH 130
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 20.8 bits (42), Expect = 5.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 40 HAEQQAEQQAQQQQQQQA 57
HA QQA QQ +Q ++ +
Sbjct: 118 HANQQAIQQLDKQNKEMS 135
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 20.8 bits (42), Expect = 5.6
Identities = 8/31 (25%), Positives = 21/31 (66%)
Query: 36 NAQQHAEQQAEQQAQQQQQQQAHQQQQQKAQ 66
NA++ A+ ++EQ +Q+ +A +Q+ ++ +
Sbjct: 313 NAEKLAKLESEQLQSEQEFLKAKEQELKRKE 343
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 20.8 bits (42), Expect = 5.6
Identities = 7/39 (17%), Positives = 18/39 (45%)
Query: 31 EHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQN 69
++H HA ++ ++ Q + + ++A+Q N
Sbjct: 16 DYHSQRVSPHARKEENKEIQNLSENDEKIKLAKQAKQDN 54
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 20.8 bits (42), Expect = 5.6
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 9 QQQANSQHHHHHHAHHHHYYGGEHHHHNAQQHAEQ 43
++ + +H H H + + H H+ + H+++
Sbjct: 117 KKHKHDKHGKKHGKKHDKDHDDKDHDHHDEDHSDK 151
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 20.8 bits (42), Expect = 5.6
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 31 EHHHHNAQQHAEQQAEQQAQQQQQQQAHQQQQQKAQQQNQQY 72
+ H H + + E + A ++QQ + Q+ +K + + +
Sbjct: 7 QEHDHLSPKEPESYQKAYACKEQQGEEKQEASEKEGEIKEDF 48
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 20.4 bits (41), Expect = 7.3
Identities = 8/29 (27%), Positives = 18/29 (61%)
Query: 44 QAEQQAQQQQQQQAHQQQQQKAQQQNQQY 72
++E Q++ QQ+A +++ + + Q Q Y
Sbjct: 29 ESENQSRFLAQQKAFEKEVNEKRAQYQSY 57
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 20.4 bits (41), Expect = 7.3
Identities = 6/19 (31%), Positives = 12/19 (62%)
Query: 5 EQQQQQQANSQHHHHHHAH 23
E ++ ++ ++H H HAH
Sbjct: 150 EAKKAKEKTTKHAHSKHAH 168
>ref|NP_222731.1| 10kDa chaperone [Helicobacter pylori J99]
Length = 118
Score = 20.4 bits (41), Expect = 7.3
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 16 HHHHHHAHHHHYYGGEHHHH 35
+H H HA H +H H
Sbjct: 99 NHDHKHAKEHEACCHDHKKH 118
>ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99]
Length = 239
Score = 20.0 bits (40), Expect = 9.6
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 19 HHHAHHHHYYGGEHHHHNAQQHAEQQAEQQAQQQQQQQ 56
HH Y + + A+ ++++AEQQ Q Q+
Sbjct: 197 HHKEFEMALYIQDKMYATAKGKSKKEAEQQCAYQALQK 234
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.112 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,547
Number of Sequences: 1491
Number of extensions: 1958
Number of successful extensions: 154
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of query: 72
length of database: 494,079
effective HSP length: 48
effective length of query: 24
effective length of database: 422,511
effective search space: 10140264
effective search space used: 10140264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)