BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646042|ref|NP_208224.1| hypothetical protein
[Helicobacter pylori 26695]
(856 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224044.1| putative [Helicobacter pylori J99] 1162 0.0
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 31 0.12
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 31 0.15
ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBU... 29 0.44
ref|NP_223475.1| putative osmoprotection binding protein [H... 29 0.44
ref|NP_223331.1| putative [Helicobacter pylori J99] 28 0.75
ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 28 0.75
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 28 0.98
ref|NP_223809.1| putative [Helicobacter pylori J99] 28 0.98
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 28 0.98
ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacte... 27 2.2
ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99] 27 2.8
ref|NP_223290.1| putative [Helicobacter pylori J99] 26 3.7
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 26 3.7
ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helic... 26 4.8
ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicob... 26 4.8
ref|NP_223862.1| putative [Helicobacter pylori J99] 26 4.8
ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [H... 26 4.8
ref|NP_223659.1| putative [Helicobacter pylori J99] 26 4.8
ref|NP_223032.1| KETOL-ACID REDUCTOISOMERASE [Helicobacter ... 26 4.8
ref|NP_222997.1| putative [Helicobacter pylori J99] 26 4.8
ref|NP_224090.1| putative [Helicobacter pylori J99] 25 6.3
ref|NP_223123.1| putative [Helicobacter pylori J99] 25 6.3
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 6.3
ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99] 25 8.3
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 1162 bits (3007), Expect = 0.0
Identities = 606/863 (70%), Positives = 675/863 (77%), Gaps = 78/863 (9%)
Query: 1 MLSYKHSNATLP---ILWGEAKRGDFDDLDKAFTQLLLTIGKHRLYTHHTPPYLCAFNAF 57
MLSY+H NATLP ILWGEAKRGDFDDLDKAFTQLLLTIGKH+LYTHHTPPYLCAFNAF
Sbjct: 1 MLSYQHPNATLPVLPILWGEAKRGDFDDLDKAFTQLLLTIGKHKLYTHHTPPYLCAFNAF 60
Query: 58 KMEFIAFDDTITSFFYKSDIDFSITPSNHNTEGFKHALDAFKAMSKSH-KFVFDFKTQSQ 116
+MEFIAF+DTITSFFYKSDIDFSI PSNHNTEGFKHALDAFKAM K H K VFDFKTQSQ
Sbjct: 61 RMEFIAFNDTITSFFYKSDIDFSIPPSNHNTEGFKHALDAFKAMCKPHNKRVFDFKTQSQ 120
Query: 117 ECKEFIKNRLNSSHLLSKIQIDKNNFFTIYQKWLEIVKPTIDINWEVAKTKDILDADYYL 176
ECKEFIK+ LNSSHL +KIQIDKNNFFTIYQKWLEIVKPTI I+WE+AK + ILDADYYL
Sbjct: 121 ECKEFIKDHLNSSHLHNKIQIDKNNFFTIYQKWLEIVKPTIKIDWELAKAEGILDADYYL 180
Query: 177 ADLLSDGDKTIIEKLHTILRSSHYKLNRGVNELGKMDF---MEVGFTDSQQAHQEFWSVY 233
ADLLSDGDKTIIEKL TIL+SSHY+L G N L K+ +VGFTD+QQAHQEFWSVY
Sbjct: 181 ADLLSDGDKTIIEKLRTILKSSHYELKWGSNTLNKLGLEGITKVGFTDNQQAHQEFWSVY 240
Query: 234 ERPPKREFQASILERRDLLVPSDVRERKGAFFTPKIWVEKSQEYLAKALGQDYQEDCIIW 293
ERPPK EFQASILERRDLLVPSDVRERKGA+FTPKIWVEKSQEYLAKALGQDYQED IIW
Sbjct: 241 ERPPKSEFQASILERRDLLVPSDVRERKGAYFTPKIWVEKSQEYLAKALGQDYQEDYIIW 300
Query: 294 DCAGGTGNLLRGLLNKANLYLSTLDHNDVAIVKDLAAKNHLKLLENHVFQFDFLNDDFFS 353
DCAGGTGNLLRGLLNKANLYLSTLDHNDVAI+KDLA+KNHLK+LEN VFQFDFLNDDFFS
Sbjct: 301 DCAGGTGNLLRGLLNKANLYLSTLDHNDVAIIKDLASKNHLKMLENQVFQFDFLNDDFFS 360
Query: 354 DKTPKSLQEILKDKEKRKKLIIYINPPYAEAGNKSKMSGTGEHKAKVARDNLICEKYKNE 413
DKTPKSLQEILKD+EKRKKLIIYINPPYAEA + SGTG++K VAR NLIC+KYK+E
Sbjct: 361 DKTPKSLQEILKDEEKRKKLIIYINPPYAEATSAKTPSGTGKNKDLVARGNLICKKYKDE 420
Query: 414 LGKANNEVFAQFFMRIYKELNGVILASFSTLKNLQGSNFKKFREIFKAKFLEGFMVPADT 473
L KANNE+FAQFFMRIYKELNG I+ASFSTLK L S+FK KF E F
Sbjct: 421 LHKANNELFAQFFMRIYKELNGCIMASFSTLKYLNSSHFK--------KFREVF------ 466
Query: 474 FDNVRGQFPIGFLVWDTSSILPKENPLNLGGNSKEEKQNSNLILDQDNLKDNPLKERFCL 533
+ +F GF+V P ++ N+ G Q L D PLK
Sbjct: 467 ----KAKFLEGFMV-------PADSFDNVTG------QFPIGFLVWDTATPPPLK----- 504
Query: 534 LDINAPNRKMCSQSRTRTKGTQKHSTAAPFETPLHTVSLEIFDSFGGFLGSKKIYTHTID 593
P + +LE+FDS GGFLG K + +D
Sbjct: 505 --------------------------------PTNAFNLEVFDSLGGFLGYKT-FKPIVD 531
Query: 594 KMLTLADYLQKFQPTKRDTIFGYLDPGRNSFQHQNLIHISIIDKSKQSHVKYFPIIATTI 653
K+ + +++ + K I G+++ FQ+ + ++++ H Y + +T +
Sbjct: 532 KVKNINAWIKNYDNKKAQEIMGFIENPTPDFQNNKFL--CVLNRQGTRHNNYLGLTSTNL 589
Query: 654 LLVSVFFSIRHCIKATWQNDRDQFYAPYDDAFQDDSEFKNNCLIFMLFHTQNRITTAQGT 713
L+ +++FSIRHCIKATWQNDRDQFYAPYDDAFQDDSEFKNNCL FMLFHTQNRIT QGT
Sbjct: 590 LIGAIYFSIRHCIKATWQNDRDQFYAPYDDAFQDDSEFKNNCLAFMLFHTQNRITATQGT 649
Query: 714 NHFIPFSETEVNAKERYSSHALLEFLKGEIKELKENDSLFLSAKKENKPLKFSPSASKVF 773
NHFIPFSE EV++KERY SHALL+FLKGEIKE K++DSLFL+AKKENKPLKFS SASKVF
Sbjct: 650 NHFIPFSEDEVDSKERYLSHALLDFLKGEIKEPKKSDSLFLNAKKENKPLKFSSSASKVF 709
Query: 774 DASREVYRYYHTQDFTNRPYNANASLYDIKEFFQGRNKQGKLNLPAKAKDEYYKQLYANL 833
DA RE+YRYYHTQDF + PYNANASLYDIKEFFQGRNKQG+LN P KAKDEYYKQLYANL
Sbjct: 710 DAGREIYRYYHTQDFIHTPYNANASLYDIKEFFQGRNKQGRLNSPTKAKDEYYKQLYANL 769
Query: 834 QDALKDLAKEIQPKVYEYGFLRE 856
Q ALKDLAKEIQPKVYEYGFLRE
Sbjct: 770 QYALKDLAKEIQPKVYEYGFLRE 792
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 31.2 bits (69), Expect = 0.12
Identities = 68/326 (20%), Positives = 115/326 (34%), Gaps = 46/326 (14%)
Query: 278 LAKALGQDYQEDCIIWDCAGGTGNLLRGLLNK-----ANLYLSTLDHNDVAIVKDLAAKN 332
+AK L + I+D + GTG LL L ++ LY + + ++K N
Sbjct: 219 IAKLLVNKPTQSVKIYDPSAGTGTLLMALAHQIGTDSCTLYAQDISQKSLRMLKLNLILN 278
Query: 333 HLKLLENHVFQFDFLNDDFFSDKTPKSLQEILKDKEKRKKLIIYINPPYAEAGNKSKMSG 392
L H + + L + + S KD K K I NPP+ K+
Sbjct: 279 DLTHSLRHAIEGNTLTNPYHS-----------KD-HKGKMDFIVSNPPF-------KLDF 319
Query: 393 TGEHKAKVARDNLICEKYKN--ELGKANNEVFAQFFMRIYKELN----GVILASFSTLKN 446
+ EH N N + K+ ++ FF L+ G I+ +
Sbjct: 320 SNEHAEISQNKNDFFLGVPNIPKNDKSKMPIYTLFFQHCLNMLSPKGKGAIIVPTGFISA 379
Query: 447 LQGSNFKKFREIFKAKFLEGFM-VPADTFDNVRGQFPIGF---------LVWDTSSILPK 496
G K R + + + G + +P+ F N I F ++ +S L +
Sbjct: 380 KSGVENKIVRHLVDERLVYGVICMPSQVFANTGTNVSIIFFQKTPSAKEVILIDASKLGE 439
Query: 497 ENPLNLGGNSKEEKQNSNLILDQDNLKDNPLKERFCLL----DINAPNRKMCSQSRTRTK 552
E N N K + S++ L + ++ K FC L +I N + +
Sbjct: 440 EYTEN--KNKKTRLRPSDMDLILETFQNKAPKSDFCALVSFDEITEKNYSLNPGQYFTIE 497
Query: 553 GTQKHSTAAPFETPLHTVSLEIFDSF 578
T + + A FE + S E+ F
Sbjct: 498 DTSETISQAEFENLMQQYSSELASLF 523
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 30.8 bits (68), Expect = 0.15
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 267 PKIWVEKSQEYLAKALGQDYQEDCIIWDCAGGTGNLLRGLLNKANLYLSTLDHNDVAIVK 326
P EK+ + L + +D I+ DC G+G L+ ++ +D++D+AI
Sbjct: 261 PSYPTEKNAQLLDLIIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIG-IDNSDLAI-- 317
Query: 327 DLAAKNHLKLLENHVFQ----FDFL 347
A KN L+ + +F +DFL
Sbjct: 318 -QACKNKLETITKDLFVSQNFYDFL 341
>ref|NP_223503.1| TYPE I RESTRICTIONENZYME (SPECIFICITY SUBUNIT) [Helicobacter pylori
J99]
Length = 207
Score = 29.3 bits (64), Expect = 0.44
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 741 GEIKELKENDSLFLSAKKENKPLKFSPSASKVFDASREVYRYYHTQDFTNRPYNAN-ASL 799
GE+ E +L +S E K P V ++ RE+Y YYH DF N N AS
Sbjct: 22 GEVCESTNKKTLKISEVSEVKNKGMYP----VINSGRELYGYYH--DFNNDGENITIASR 75
Query: 800 YDIKEFFQGRNKQ---GKLNLPAKAKD 823
+ F N++ G L P K KD
Sbjct: 76 GEYAGFINYFNEKFFAGGLCYPYKVKD 102
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 29.3 bits (64), Expect = 0.44
Identities = 25/90 (27%), Positives = 40/90 (43%), Gaps = 13/90 (14%)
Query: 96 DAFKAMSKSHKFVFDFKTQSQ---ECKEFIKNRLNSSHLLS----------KIQIDKNNF 142
DAFK + K+++F F + K F +++N+ + + K+ D F
Sbjct: 430 DAFKGLIKAYRFHFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGF 489
Query: 143 FTIYQKWLEIVKPTIDINWEVAKTKDILDA 172
F YQ + I K TI EV K + LD+
Sbjct: 490 FPNYQAGIVIRKETIKKYPEVLKILEKLDS 519
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 28.5 bits (62), Expect = 0.75
Identities = 44/170 (25%), Positives = 69/170 (39%), Gaps = 42/170 (24%)
Query: 259 ERKGAFFTPKIWVE----KSQEYLAKALGQDYQEDCI-IWDCAGGTGNLLRGLLNKANLY 313
E+ G +TP V+ + L K D+ + I I+D GTG+ + LL+K N +
Sbjct: 422 EKLGIVYTPIEVVDFILRATNGILKKHFNTDFNDQSITIFDPFMGTGSFIARLLSKENDF 481
Query: 314 LS------------------TLDHNDVAIVKDLAAKNHLKLLENHVFQFDFLND--DFFS 353
+S L + I AA+N L+N F+ L D D+
Sbjct: 482 ISDEALKEKFQKGLFAFDIVLLSYYIALINITQAAQNRDSSLKN--FKNIALTDSLDYLE 539
Query: 354 DKTPKSL--------------QEILKDKEKRKKLIIYINPPYAEAGNKSK 389
+K K + +EI EK+ +I NPPY+ +G KS+
Sbjct: 540 EKNDKGVIPGFEYLFEDLKENKEIKTTMEKQNIRVIIGNPPYS-SGAKSE 588
>ref|NP_223112.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 354
Score = 28.5 bits (62), Expect = 0.75
Identities = 34/167 (20%), Positives = 69/167 (40%), Gaps = 15/167 (8%)
Query: 137 IDKNNFFTIYQKWLEIVKPTIDINWEVAKTKDILDADYYLADLLSDGDKTIIEKLHTILR 196
I+ N TI ++ ++I+K E+ T D ++ + +++ + +I+ L I+
Sbjct: 149 IELNLLDTILRQVMQILKEVWSPVVEMYPTIDAKESSANVVQIVAQNEISIMVVLEIIIG 208
Query: 197 SSHYKLN---------RGVNELGKMDFMEVGFTDSQQAHQEFWSVYERPPKREF------ 241
S +N ++++G DFM + ++E ++
Sbjct: 209 HSRGMMNICYPVISIESILSKMGSRDFMLSETNSKKSRNKELQALLSGVSVDMMVFLGAV 268
Query: 242 QASILERRDLLVPSDVRERKGAFFTPKIWVEKSQEYLAKALGQDYQE 288
+ S+ E DL V +R K A ++V K + YLA Q Y++
Sbjct: 269 ELSLKEMLDLDVGDTIRLNKVANDEVSVYVHKKKRYLASVGFQGYRK 315
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 28.1 bits (61), Expect = 0.98
Identities = 12/27 (44%), Positives = 19/27 (69%)
Query: 824 EYYKQLYANLQDALKDLAKEIQPKVYE 850
E+ KQ+ + L+D KD AKE++ K+ E
Sbjct: 1151 EFGKQIASMLEDKTKDFAKELRAKMLE 1177
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 28.1 bits (61), Expect = 0.98
Identities = 15/36 (41%), Positives = 21/36 (57%)
Query: 717 IPFSETEVNAKERYSSHALLEFLKGEIKELKENDSL 752
I F E E + K + + L E +KG +KELK+N L
Sbjct: 178 IYFKEKEGDFKSQKNLKLLKEQVKGSLKELKDNPKL 213
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 28.1 bits (61), Expect = 0.98
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 723 EVNAKERYSSHALLEFLKGEIKELKENDSLFLSAKKENKPLK---FSPSASKVFDASREV 779
E AKE + + +G+IKE K +S KE P+K F+ + ++F S
Sbjct: 25 ENKAKESNKENKNNKAKEGKIKEAKTKESKVKETAKEPIPVKKLSFNEALEELFANSLSD 84
Query: 780 YRYYHTQDFTNRPYNANASLYDIKEFFQGRNKQGKLNLPAKAKDEYYKQLYA-----NLQ 834
Y + + A + IKE Q K+ + EY K+L A N +
Sbjct: 85 CVSYESIIQISAKVPTLAQIKKIKELCQKYQKK------LVSSSEYAKKLNAIDKIKNTE 138
Query: 835 DALKDLAKEIQPKVYEYGFLRE 856
+ K L +E++ Y FL+E
Sbjct: 139 EKQKVLDEELED---GYDFLKE 157
Score = 26.2 bits (56), Expect = 3.7
Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 324 IVKDLAAKNHLKLLENHVFQFDFLNDDFFSDKTPKSLQEILKDKEKRKKLIIYINPPYAE 383
+ D NH K+L N + +D + ++ + D +K +++ +E
Sbjct: 364 LFNDTLIANHKKILANIT---NMTKEDIIAQVPEATMVSVYMDLKK-----LFLTKEASE 415
Query: 384 AGNKSKMSGTGEHKAKVARDNLICEKYKNELGKAN 418
G + E ++ R LI ++ KN++ K+N
Sbjct: 416 EGFDLAPNKLKEILEQIKRGKLISDRAKNKMAKSN 450
>ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacter pylori J99]
Length = 360
Score = 26.9 bits (58), Expect = 2.2
Identities = 13/51 (25%), Positives = 25/51 (48%)
Query: 717 IPFSETEVNAKERYSSHALLEFLKGEIKELKENDSLFLSAKKENKPLKFSP 767
+PF K +Y H LL+ +K K++K +F+ ++++ K P
Sbjct: 133 LPFEVGYYQKKAQYVGHPLLDEIKYYKKDIKGETLVFMPGSRKSEIAKMFP 183
>ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99]
Length = 422
Score = 26.6 bits (57), Expect = 2.8
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 313 YLSTLDHNDVAIVKDLAAKNHLKLLENHVFQFDFLNDDFFSDKTP 357
Y LD A + + LKLLE H+++ L D F P
Sbjct: 55 YAHALDKKVYATINGFPFNSQLKLLEEHLYKMAELEPDAFIIAAP 99
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 26.2 bits (56), Expect = 3.7
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 771 KVFDASREVYRYYHTQDFTNRPYNANASLYDIKEFFQGRNKQGKLNLPAKAKDEYY---- 826
+V + REVY N P N + D++E+ GR Q L+ +D Y+
Sbjct: 261 RVKEGEREVYYALKAHHRDNFPNNIQGLMSDMREY--GRIFQIFLD-----RDHYFLHRG 313
Query: 827 -KQLYANLQDALKDLAK 842
Q ANL+ +KDL K
Sbjct: 314 DPQQLANLRLRVKDLVK 330
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 26.2 bits (56), Expect = 3.7
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 1/56 (1%)
Query: 412 NELGKANNEVFAQFFMRIYKELNGVILASFSTLKNLQGSNFKKFREIFKAKFLEGF 467
NE K + F++ I ++L + K+ +NF++F+ I +AK LE F
Sbjct: 254 NEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAK-LENF 308
>ref|NP_224089.1| putative ATP-DEPENDENT DNA HELICASE [Helicobacter pylori J99]
Length = 681
Score = 25.8 bits (55), Expect = 4.8
Identities = 24/90 (26%), Positives = 39/90 (42%), Gaps = 9/90 (10%)
Query: 48 PPYLCAFNAFKMEFIAFDDTITSFFYKSDIDFSITPSNH-NTEGFKHALDAFKA-MSKSH 105
PP LC F+ F + F+ + K DFS+ S+ T + + F+A +S+
Sbjct: 86 PPLLCTFHRFGLLFLRQHMNL----LKRACDFSVLDSDEVKTLCKQLKISNFRASISQIK 141
Query: 106 KFVFDFKTQSQEC---KEFIKNRLNSSHLL 132
+ D Q EC E +N L +L+
Sbjct: 142 NGMMDLSVQDSECYKAYELYQNALKKDNLV 171
>ref|NP_223943.1| putative 30S RIBOSOMAL PROTEIN S8 [Helicobacter pylori J99]
Length = 131
Score = 25.8 bits (55), Expect = 4.8
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 16/105 (15%)
Query: 324 IVKDLAAKNHLKLLENHVFQFDFLNDDFFSDKTPKSLQEILKDK---------EKRKKLI 374
+V D+ A + +L + + +F + K S+ EI K+K +K KK
Sbjct: 1 MVNDIIADSLTRLRNASMRRLEFTQ--LYYAKIVVSILEIFKEKGFIKDFNVKDKDKKQS 58
Query: 375 IYINPPYAEAGNKSKMSGTGEHKAKVARDNLICEKYKNELGKANN 419
+Y+ Y E G+ SK+S ++++ K KNEL + N
Sbjct: 59 VYVQLAYDEKGH-SKIS----EVKRLSKPGRRVYKQKNELKRFKN 98
>ref|NP_223862.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.8 bits (55), Expect = 4.8
Identities = 13/53 (24%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 753 FLSAKKENKPLKFSPSASKVFDASREVYRYYHTQDFTNRPYNANASLYDIKEF 805
FLS K+ K L + + DA++ ++ +T PY ++YD +++
Sbjct: 50 FLSQHKDQKVLLHCRAGRRALDAAKSMHELGYT------PYYLEGNVYDFEKY 96
>ref|NP_223685.1| CYCLOPOCYCLOPROPANE FATTY ACID SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 25.8 bits (55), Expect = 4.8
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 4/43 (9%)
Query: 738 FLKGEIKELKENDSLFLSAKKENKPLKFSPSASKVFDASREVY 780
+L+ + L ++DS AK KPLK S + SK +D + Y
Sbjct: 82 YLQTNYEHLHKHDS----AKAVQKPLKESSNISKHYDLGNDFY 120
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 25.8 bits (55), Expect = 4.8
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 84 SNHNTEGFKHALDAFKAMSKSHKFVFDFKTQSQECKEFIKNRLNSSHLLSKIQIDKNNFF 143
+NH+T K + FK +HK D + +S K + S HL + + +
Sbjct: 288 NNHSTP-LKQKISKFKIALFNHKDTSDDEKESLSIDRIDKRKPVSEHLKNMSKHELYELL 346
Query: 144 TIYQKWLE 151
YQK L+
Sbjct: 347 GFYQKELD 354
>ref|NP_223032.1| KETOL-ACID REDUCTOISOMERASE [Helicobacter pylori J99]
Length = 330
Score = 25.8 bits (55), Expect = 4.8
Identities = 25/82 (30%), Positives = 41/82 (49%), Gaps = 6/82 (7%)
Query: 385 GNKSKMSGTGEHKAKVARD---NLICEKYKNELGKANNEVFAQFFMRIYKELNGVILASF 441
G + +S T E A AR+ NL+ ++ + L K N FA+ F+ + K LN L
Sbjct: 248 GLRKHISNTAEFGAIKAREPMGNLLEKRMQKILKKIQNGAFAKDFL-LEKSLNYPRLN-- 304
Query: 442 STLKNLQGSNFKKFREIFKAKF 463
+ K L+ + ++ EI +A F
Sbjct: 305 TERKALKETKIEQIGEILRAPF 326
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 25.8 bits (55), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 416 KANNEVFAQFFMRIYKELNGVILASF 441
K E+ + R +K LNG ILASF
Sbjct: 54 KREQEILKRLSQRGFKHLNGEILASF 79
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 25.4 bits (54), Expect = 6.3
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 193 TILRSSHYKLNRGVNELGKMDFMEVGFTDSQQAHQEFWSVYERPPKREF 241
T+L +S Y + +N + F D ++A + FW+ KR+F
Sbjct: 372 TLLANSFYPIKPTINPM---------FLDKERAKERFWNTQYFEGKRDF 411
>ref|NP_223123.1| putative [Helicobacter pylori J99]
Length = 409
Score = 25.4 bits (54), Expect = 6.3
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 1/32 (3%)
Query: 37 IGKHRLYTHHTPPYLCAFNAFKMEFIAFDDTI 68
I K L +HHTP +L + +FK E + F + I
Sbjct: 56 IKKQWLRSHHTPLWLSVYESFK-EALDFKEVI 86
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.4 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 506 SKEEKQNSNLILDQDNLKDNPLKERFCLLDINAPNRK 542
S +K+ +N +++NLK+NP+ E N PN +
Sbjct: 181 SDSQKKETNNDKEKENLKENPIDENH-----NTPNEE 212
>ref|NP_223326.1| CHORISMATE SYNTHASE [Helicobacter pylori J99]
Length = 365
Score = 25.0 bits (53), Expect = 8.3
Identities = 12/64 (18%), Positives = 31/64 (47%)
Query: 737 EFLKGEIKELKENDSLFLSAKKENKPLKFSPSASKVFDASREVYRYYHTQDFTNRPYNAN 796
+ L+ E+K + ++F + +KE+ ++ + + F A + H Q ++ Y+
Sbjct: 37 DLLENEMKRRQGGRNIFTTPRKEDDKVEITSGVFEGFSAGTPIGFLIHNQRARSKDYDNI 96
Query: 797 ASLY 800
+L+
Sbjct: 97 KNLF 100
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 980,658
Number of Sequences: 1491
Number of extensions: 49609
Number of successful extensions: 185
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 30
length of query: 856
length of database: 494,079
effective HSP length: 86
effective length of query: 770
effective length of database: 365,853
effective search space: 281706810
effective search space used: 281706810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)