BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646045|ref|NP_208227.1| hypothetical protein
[Helicobacter pylori 26695]
(82 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224047.1| putative [Helicobacter pylori J99] 155 1e-40
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 25 0.29
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 23 1.4
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 23 1.4
ref|NP_223305.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 22 2.4
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 3.2
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 22 3.2
ref|NP_223491.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter p... 22 3.2
ref|NP_223515.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 21 5.4
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 21 5.4
ref|NP_222874.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_222831.1| putative [Helicobacter pylori J99] 21 5.4
ref|NP_223498.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 20 7.1
ref|NP_223062.1| multi-drug resistance protein [Helicobacte... 20 7.1
ref|NP_222875.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 20 9.2
ref|NP_223310.1| putative [Helicobacter pylori J99] 20 9.2
>ref|NP_224047.1| putative [Helicobacter pylori J99]
Length = 86
Score = 155 bits (393), Expect = 1e-40
Identities = 75/86 (87%), Positives = 79/86 (91%), Gaps = 4/86 (4%)
Query: 1 MACKFCPKIRKTDWIFILIAALGFYAVNKLGYVPQFNTPTSK----ISRSIEKPDNMTEE 56
MACKFCPKIRKTDWIFILIAALGFY+VNKLGY P+FNTPT K +SR IEKP+NMTEE
Sbjct: 1 MACKFCPKIRKTDWIFILIAALGFYSVNKLGYAPKFNTPTPKSSRPLSRPIEKPNNMTEE 60
Query: 57 ERKKRFIELQKACLLHKDKKACEEVF 82
ERKKRFIELQKACLLHKDKKACEEVF
Sbjct: 61 ERKKRFIELQKACLLHKDKKACEEVF 86
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 25.0 bits (53), Expect = 0.29
Identities = 11/17 (64%), Positives = 13/17 (75%)
Query: 51 DNMTEEERKKRFIELQK 67
DN T +E K+RFIEL K
Sbjct: 622 DNPTSKESKERFIELLK 638
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 22.7 bits (47), Expect = 1.4
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 18 LIAALGFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTEEERKKRFIELQKACLLHKDKKA 77
+ A+ FY K + P + I DN++ +E K+RF CL K+++
Sbjct: 48 MFGAIDFYTSMKKEGIK----PIIGMEAYIHNDDNLSSKETKQRF----HLCLFAKNQEG 99
Query: 78 CEEV 81
E +
Sbjct: 100 YENL 103
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 22.7 bits (47), Expect = 1.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 17 ILIAALGFYAVNKL---GYVPQFNTPTSKISRSIEKPDNMTEEERKKRFI 63
++I+ F A+NK P F P + S S+ + D+ ++RK +FI
Sbjct: 168 VIISKEDFDALNKERLNANEPLFANPRNAASGSLRQLDSNITKKRKLQFI 217
>ref|NP_223305.1| putative [Helicobacter pylori J99]
Length = 79
Score = 22.3 bits (46), Expect = 1.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 15 IFILIAALGFYAVNKLGYVPQFNTPTSKISRS 46
I ILI + + +G + +FNTPT+ ++S
Sbjct: 41 ILILIKVNKAHFLKGIGGILRFNTPTTPQTKS 72
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 55 EEERKKRFIELQKACLLHKDKK 76
EEERKK + ++ C + ++K+
Sbjct: 461 EEERKKALEQAEQGCSIGENKE 482
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (56%)
Query: 62 FIELQKACLLHKDKKACEEVF 82
FI LL +DKK +EVF
Sbjct: 387 FIAFSGTPLLKQDKKTSQEVF 407
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 21.6 bits (44), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 49 KPDNMTEEERKKRFIELQKACLLHKDKK 76
KP ++E+KK E+ +AC K+KK
Sbjct: 45 KPTFDYDQEKKKHIFEMIEAC---KNKK 69
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 43 ISRSIEKPDNMTEEERKKRFIEL 65
I S+E P+N EE +++ I++
Sbjct: 181 ILESLETPNNALEETKEEEIIQV 203
>ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter pylori J99]
Length = 226
Score = 21.6 bits (44), Expect = 3.2
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 21 ALGFYAVNKLGYVPQFNTPTSKIS 44
AL + N +G +P F +PT+ S
Sbjct: 84 ALYVFFSNMIGIIPGFESPTASWS 107
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 37 NTPTSKISRSIEKPDNMTEEERKKRFIELQK 67
NTP SK + + ++ + +E K+R E +K
Sbjct: 473 NTPISKENAAKKEAPKPSSKEEKRRLKEEKK 503
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 20.8 bits (42), Expect = 5.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 55 EEERKKRFIELQKA 68
E +KKRFI L+KA
Sbjct: 315 EAYQKKRFIPLEKA 328
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/23 (34%), Positives = 15/23 (64%)
Query: 45 RSIEKPDNMTEEERKKRFIELQK 67
+ +EK ++E+E KK ++QK
Sbjct: 140 KKLEKDKEISEDESKKAQEQIQK 162
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 20.8 bits (42), Expect = 5.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 37 NTPTSKISRSIEKPDNMTEEERKKRFIE 64
NTP SK + + +P N + E +++ E
Sbjct: 47 NTPNSKNANTPLEPKNAAKIETQEKITE 74
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 20.8 bits (42), Expect = 5.4
Identities = 12/44 (27%), Positives = 22/44 (49%)
Query: 17 ILIAALGFYAVNKLGYVPQFNTPTSKISRSIEKPDNMTEEERKK 60
+L+AA ++K + Q +K +E+ TE+ER+K
Sbjct: 113 LLLAACSTGDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQK 156
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 20.4 bits (41), Expect = 7.1
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 37 NTPTSKISRSIEKPDNMTEEERKKRFIELQ 66
NT +S + + E ERKK F++++
Sbjct: 137 NTANMLLSLQSQVLSFVVENERKKAFLQMK 166
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 20.4 bits (41), Expect = 7.1
Identities = 6/28 (21%), Positives = 16/28 (56%)
Query: 55 EEERKKRFIELQKACLLHKDKKACEEVF 82
+E R+K ++ K ++K+ C+ ++
Sbjct: 1315 QEAREKAVLDCLKTARTDEEKRKCQNLY 1342
>ref|NP_223062.1| multi-drug resistance protein [Helicobacter pylori J99]
Length = 551
Score = 20.4 bits (41), Expect = 7.1
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 51 DNMTEEERKKRFIELQKACLL 71
DN TEE K+ +EL++ L+
Sbjct: 504 DNHTEESVKQSILELKQNRLI 524
>ref|NP_222875.1| putative [Helicobacter pylori J99]
Length = 87
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 50 PDNMTEEERKKRFIELQKAC 69
PDN ++ KR ++QK C
Sbjct: 33 PDNTEALKQMKRLEKIQKNC 52
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 20.0 bits (40), Expect = 9.2
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 39 PTSKISRSIEKPDNMTEEERKK 60
P S++S +I PD + + KK
Sbjct: 411 PASRVSEAILNPDKEIDFKGKK 432
>ref|NP_223310.1| putative [Helicobacter pylori J99]
Length = 135
Score = 20.0 bits (40), Expect = 9.2
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 4 KFCPKIRKTDWI 15
K CPK ++T W+
Sbjct: 74 KICPKDKETLWL 85
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,452
Number of Sequences: 1491
Number of extensions: 3076
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of query: 82
length of database: 494,079
effective HSP length: 58
effective length of query: 24
effective length of database: 407,601
effective search space: 9782424
effective search space used: 9782424
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)