BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646046|ref|NP_208228.1| hypothetical protein
[Helicobacter pylori 26695]
(239 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224048.1| putative [Helicobacter pylori J99] 245 9e-67
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 28 0.22
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 28 0.28
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 28 0.28
ref|NP_223243.1| putative [Helicobacter pylori J99] 28 0.28
ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter... 28 0.28
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 27 0.63
ref|NP_224131.1| putative [Helicobacter pylori J99] 26 0.82
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 26 1.1
ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Hel... 26 1.1
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 25 1.4
ref|NP_223526.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 25 1.8
ref|NP_223618.1| putative [Helicobacter pylori J99] 25 2.4
ref|NP_223323.1| putative [Helicobacter pylori J99] 25 2.4
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 25 2.4
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 24 3.1
ref|NP_224075.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 23 5.3
ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synt... 23 5.3
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 23 5.3
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 23 5.3
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 7.0
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 23 7.0
ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobac... 23 7.0
ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [He... 23 7.0
ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Heli... 23 7.0
ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter py... 23 9.1
ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 23 9.1
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 23 9.1
ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 23 9.1
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 245 bits (625), Expect = 9e-67
Identities = 128/186 (68%), Positives = 148/186 (78%), Gaps = 6/186 (3%)
Query: 11 MKAFKVDLDSSENQSILKPSARSSNN----QAHQVDETAKKIDKLIKNAPYSNDDIVLNH 66
M+ + +D D+ + R+SN+ ++D A+KI ++K S DI+L H
Sbjct: 1 METYIIDADNIDGDLFFYNLTRNSNDFSMLPVFELDRIAQKIRNILKKHG-SRKDIILKH 59
Query: 67 NKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVFIDSLFWDYKDDV 126
N+IKEAFFSPFKPQLK QVFLSHSHAD+NKAL VKDYLES+TKRKVFIDSLFWDYKDDV
Sbjct: 60 NEIKEAFFSPFKPQLKTVQVFLSHSHADKNKALGVKDYLESKTKRKVFIDSLFWDYKDDV 119
Query: 127 LNKLARYDDISKIEDAFTLILRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKITYSAWIY 186
LNKLA++DDISKIEDAFTLILR+SLQDMIEKCPYFVFLQS NSVS NQ L +ITYSAWIY
Sbjct: 120 LNKLAKHDDISKIEDAFTLILRKSLQDMIEKCPYFVFLQSKNSVS-NQGLSRITYSAWIY 178
Query: 187 EELKIA 192
EELKIA
Sbjct: 179 EELKIA 184
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 28.1 bits (61), Expect = 0.22
Identities = 29/113 (25%), Positives = 52/113 (45%), Gaps = 19/113 (16%)
Query: 8 KYIMKAFKVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYSNDDIVLNHN 67
K I++ + DL+ S+ S+L+ S+N +K+D+ KN +I+ N
Sbjct: 342 KEILECMQDDLNVSKALSVLESMLSSTN----------EKLDQNPKNKALKG-EILANLK 390
Query: 68 KIKEAFFSPFKPQLKNAQVFLSHSH--------ADRNKALEVKDYLESQTKRK 112
I+E FK Q+ +S S +R +A E KD+L++ + R+
Sbjct: 391 FIEELLGIGFKDPSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIRE 443
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 27.7 bits (60), Expect = 0.28
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 101 VKDYLESQTKRKVFIDSLFWDYKDDVLNKLARYDDISKIEDAFTLILRESLQDMIEKCPY 160
V D + ++ VF+ D+K D R D+ K+ D F + +++ PY
Sbjct: 374 VLDKENAHARKGVFVIDASKDFKKDGNKNRLREQDVQKMIDTF---------NALKEIPY 424
Query: 161 FVFLQSSNSVSFNQNLLKI 179
+ + S +S N L I
Sbjct: 425 YSKMVSLEEISLNDYNLNI 443
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 27.7 bits (60), Expect = 0.28
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 36 NQAHQVDETAKKIDKLIKNAPYSNDDIVLNHNKI-------KEAFFSPFKPQLKNAQVFL 88
N+ + + E K+I K + ++D+ + K+ KE F K Q+ L
Sbjct: 223 NKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKLESIKPFLKEEAFKEIKKQIDR----L 278
Query: 89 SHSHADRNKALEVKDYLESQTKRKVFIDSLFWDYKDDVLN 128
S +HAD + + +++Y+E+ +D F Y+ L+
Sbjct: 279 SRTHADSSDSATLQNYVET------MLDVPFGQYEKKALD 312
>ref|NP_223243.1| putative [Helicobacter pylori J99]
Length = 678
Score = 27.7 bits (60), Expect = 0.28
Identities = 19/74 (25%), Positives = 32/74 (42%), Gaps = 1/74 (1%)
Query: 1 MSENIKGKYIMKAF-KVDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYSN 59
+SE++ + K F + L S+ + K A + T K +D I PY N
Sbjct: 300 VSESLSSWHFDKKFDSIGLTSALQDLVKKEHAYMLSAFIESAPRTVKSLDVQITGLPYIN 359
Query: 60 DDIVLNHNKIKEAF 73
D+ ++N I +F
Sbjct: 360 DNNLVNSGVILPSF 373
>ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter pylori J99]
Length = 151
Score = 27.7 bits (60), Expect = 0.28
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Query: 81 LKNAQVFLSHSHADRNKALEVKDYLESQT-KRKVFIDSLFWDYKD 124
L AQVF+ HA + A VK +LE + K + F+ + DY D
Sbjct: 5 LNTAQVFIGSDHAGLHLAEFVKHFLEDKRFKIQAFLPTTRVDYPD 49
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 26.6 bits (57), Expect = 0.63
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 104 YLESQTKRKVFIDSLFWDYKDDVLNKLARYDDISKIEDAFTLILRESLQDMIEK 157
+L++QT+RK SL Y + L L+ D+ +D +T +L ++L + K
Sbjct: 130 FLKNQTRRKKLFLSLSNSYHGETLGALS-VGDVKLYKDTYTPLLLKNLITPVPK 182
Score = 23.9 bits (50), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 63 VLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKAL 99
+L HN+I F++P++ + FL HSH+ AL
Sbjct: 286 LLTHNEIYNQFYAPYEEN----KAFL-HSHSYTGNAL 317
>ref|NP_224131.1| putative [Helicobacter pylori J99]
Length = 115
Score = 26.2 bits (56), Expect = 0.82
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 17 DLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYSND--DIVLNHNKIKE 71
D +QS + + NNQ +Q ++ KKI+ ++ + + D++ N NKI E
Sbjct: 23 DEPKKSSQSHQNNTKTTQNNQINQPNKDIKKIEHEEEDEKVTKEVNDLINNENKIDE 79
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 25.8 bits (55), Expect = 1.1
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 42 DETAKKIDKLIKNAPYSN----DDIVLNHNKIKEAFFSPFKPQLKNA 84
DE+ KKI+ L+K A N DD+ +++ + F+P P + NA
Sbjct: 392 DESLKKINALVKQAIGYNQNRGDDVAVSNFE-----FNPMAPMIDNA 433
>ref|NP_222871.1| DELTA-AMINOLEVULINIC ACID DEHYDRATASE [Helicobacter pylori J99]
Length = 323
Score = 25.8 bits (55), Expect = 1.1
Identities = 29/141 (20%), Positives = 54/141 (37%), Gaps = 8/141 (5%)
Query: 38 AHQVDETAKKIDKLIKNAPYSNDDIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNK 97
++ +D + K + A Y + I+ K +++ PF+ + F +
Sbjct: 163 SNMMDGNVLSLRKALDKAGYFHTPIMSYSTKFASSYYGPFRDVANSPPSFGDRKSYQMDY 222
Query: 98 ALEVKDYLESQTKRKVFIDSLFWDYKDDVLNKLARYDDISKIEDAFTLILRESLQDMIEK 157
A + + LES K D L V LA D + +I D L L +L ++ +
Sbjct: 223 ANQKEALLESLEDEKQGADILM------VKPALAYLDIVKEIRDHTLLPL--ALYNVSGE 274
Query: 158 CPYFVFLQSSNSVSFNQNLLK 178
Q N +++ LL+
Sbjct: 275 YAMLKLAQKHNLINYESVLLE 295
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 25.4 bits (54), Expect = 1.4
Identities = 19/58 (32%), Positives = 30/58 (50%), Gaps = 8/58 (13%)
Query: 175 NLLKITYSAWIYEELKIAHSISKGYLTLSFEQEQGLEIKIENDISLFLKSFKTITLNE 232
+L+K +SA EEL+ + + KGY + FE +GL + D F +TLN+
Sbjct: 560 SLIKQVFSA---EELEKSGMVKKGYYGVLFETLEGLGFGEKTDDENF-----KLTLNQ 609
>ref|NP_223526.1| putative [Helicobacter pylori J99]
Length = 292
Score = 25.4 bits (54), Expect = 1.4
Identities = 38/161 (23%), Positives = 62/161 (37%), Gaps = 54/161 (33%)
Query: 4 NIKGKYIMKA-FKVDLDSSENQSIL--KPSARSSN-----NQA----------------- 38
++ KY ++A + +D DS+E+ S+ PS +SN N A
Sbjct: 32 SVAKKYKIEAEYSIDFDSAEHTSLFIPMPSVAASNVHLQGNHASYESMLNFGVPYLQVEF 91
Query: 39 -----------------HQVDETAKKIDKLIKNAPYSNDDIVLNH--NKIKEAFFSPFKP 79
+Q++E + Y DD + + N++K A +P K
Sbjct: 92 LKSTQKKRVHLSYEIASYQLNERLFDASDFVAMGRYERDDASVANIANQLKGA--TP-KE 148
Query: 80 QLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVFIDSLFW 120
++N F+ H R KALE K+ L + DSL W
Sbjct: 149 SVRNFYAFIKHDMPKRQKALEGKENLPKR-------DSLPW 182
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 25.0 bits (53), Expect = 1.8
Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 25/84 (29%)
Query: 11 MKAFKVDLDSSENQSI----LKPSARSSNNQAHQVDETAKKIDKLIKNA----------- 55
+KA + +D E++ + L ++ ++ + ++ T+K I++L+K
Sbjct: 293 LKALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFE 352
Query: 56 ----------PYSNDDIVLNHNKI 69
P ND ++ NH KI
Sbjct: 353 KELKRLEYKLPLFNDTLIANHKKI 376
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 24.6 bits (52), Expect = 2.4
Identities = 40/185 (21%), Positives = 74/185 (39%), Gaps = 45/185 (24%)
Query: 88 LSHSHADRNKALEVKDYLESQ-------TKRKVFIDSLF----------WDY-KDDVLNK 129
L HS+ D N LEV D ++++ KR F++S +DY K+ L +
Sbjct: 22 LIHSNKDNNALLEVADKIDAEKLFSALYLKRLKFLNSQLQNSLKSVIESFDYSKEKALEE 81
Query: 130 LARYD----DISKIED-------------AFTLILRESLQDMIEKCPYFVFLQSSNSVSF 172
+ D DI K + A ++++ ++++ ++ PY L + + F
Sbjct: 82 IKALDLGVKDIEKTYEKLRANLEEEYSSVAVNSVVKKVIEEVRDQKPYLASLINKPN-EF 140
Query: 173 NQNLLKITYSAWI----YEELKIAHSISKGYLT-----LSFEQEQGLEIKIENDISLFLK 223
N + I I E KI S SK + + + GL + +E+ + L +
Sbjct: 141 NSEIESIMQQNLIKNAKLEIEKINLSFSKDFCAEFASLNNTQLSSGLSVNLEHGLELGIN 200
Query: 224 SFKTI 228
+ I
Sbjct: 201 ALSVI 205
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 24.6 bits (52), Expect = 2.4
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 139 IEDAFTLILRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKITYSAWIYEELKIAHSISKG 198
+E A R+ + ++K F Q+ N+ + ++NL ++ A I + +A + SK
Sbjct: 28 LEQARAYFTRKRNKKFLQK-----FAQNQNAYASSENLDELLKHAKISSLMFLARAYSKA 82
Query: 199 YLTLSFEQEQGL 210
+ +S E +GL
Sbjct: 83 DVEMSIEILKGL 94
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 24.6 bits (52), Expect = 2.4
Identities = 22/84 (26%), Positives = 37/84 (43%), Gaps = 1/84 (1%)
Query: 130 LARYDDISKIEDAFTLILRESLQDMIEKCPY-FVFLQSSNSVSFNQNLLKITYSAWIYEE 188
L + DI + L LR ++ + Y F + ++ L K + + E+
Sbjct: 59 LLEHQDIYALNSKKLLELRRLKVGIVFQSHYLFKGFSALENLQVASILAKQEINHSLLEQ 118
Query: 189 LKIAHSISKGYLTLSFEQEQGLEI 212
L IAH++ +G LS Q+Q L I
Sbjct: 119 LGIAHTLKQGVGELSGGQQQRLSI 142
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 24.3 bits (51), Expect = 3.1
Identities = 14/64 (21%), Positives = 28/64 (42%), Gaps = 2/64 (3%)
Query: 17 DLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLI--KNAPYSNDDIVLNHNKIKEAFF 74
++ E + + + ++ N +V E K K K AP + + + NH+ + E
Sbjct: 512 EMQEKETKEAVGKALQTKENDTKEVQENETKETKEAQPKEAPTALQEFMANHSNLIEEIK 571
Query: 75 SPFK 78
S F+
Sbjct: 572 SEFE 575
>ref|NP_224075.1| putative [Helicobacter pylori J99]
Length = 271
Score = 23.5 bits (49), Expect = 5.3
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 20/116 (17%)
Query: 3 ENI-KGKYIMKAFK---VDLDSSENQSILKPSARSSNNQAHQVDETAKKIDKLIKNAPYS 58
EN+ K K+I+ + +LDS + Q ++NN V+ A +DK +K Y
Sbjct: 168 ENVEKFKHILASVDDLIANLDSRKTQ--FDSLINNANNLVSNVNNVALDVDKRVKQGQYD 225
Query: 59 NDDIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLESQTKRKVF 114
F + F P + AQ+ L + K + D ++ + +F
Sbjct: 226 --------------FKAMFTPLIMQAQLSLRNIDNFVEKGSALIDKFDANPYKTIF 267
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 23.5 bits (49), Expect = 5.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 104 YLESQTKRKVFIDSLFW 120
Y+++ T+R+ F D +FW
Sbjct: 871 YIDNATERRFFPDFIFW 887
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.5 bits (49), Expect = 5.3
Identities = 22/86 (25%), Positives = 40/86 (45%), Gaps = 10/86 (11%)
Query: 164 LQSSNSVSFNQNLLKIT----YSA-----WIYE-ELKIAHSISKGYLTLSFEQEQGLEIK 213
L ++ + N+N+L IT YS ++E E+K + I + T+ E+ L K
Sbjct: 462 LSNAQEIKKNENILIITGNPPYSGASENKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDK 521
Query: 214 IENDISLFLKSFKTITLNELSQQINL 239
I+ + K ++ + N L + NL
Sbjct: 522 IQTLLKNVQKQKESGSKNALKELKNL 547
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 23.5 bits (49), Expect = 5.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 11 MKAFKVDLDSSENQSILKPSARSSNNQAHQV-DETAKKIDKLIKN 54
+K + D + SE++S + + Q ++ DE KKID+ +KN
Sbjct: 139 VKKLEKDKEISEDES------KKAQEQIQKITDEAIKKIDESVKN 177
>ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 23.5 bits (49), Expect = 5.3
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 4/57 (7%)
Query: 45 AKKIDKLIKNAPYSNDDIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEV 101
A K KLI P D +H + +P + +L+ A SHA+ +KAL++
Sbjct: 163 ANKHHKLILCDPKGKDYSKYSHASL----ITPNRAELEQALHLKLDSHANLSKALQI 215
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 23.5 bits (49), Expect = 5.3
Identities = 19/87 (21%), Positives = 36/87 (40%), Gaps = 8/87 (9%)
Query: 53 KNAPYSNDDIVLNHNKI---KEAFFSPFKPQLKNAQVFLSHSHADRNKALEV-----KDY 104
+N P++ ++ + + KE + F L A F + +L K Y
Sbjct: 97 RNIPFAEVSLIYGYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQIPKSY 156
Query: 105 LESQTKRKVFIDSLFWDYKDDVLNKLA 131
E +++ FI+++F+ D L K A
Sbjct: 157 REKLQRKETFINAIFYGVGADFLYKRA 183
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 23.5 bits (49), Expect = 5.3
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 164 LQSSNSVSFNQNLLKITYSAWIYEELKIAHSI-SKGYLTLS 203
L +NSV+F + +I Y W + EL +I SK +TL+
Sbjct: 218 LSVANSVNFGRIAFQIVYHIWGFLELYKKGAINSKEKITLA 258
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 23.1 bits (48), Expect = 7.0
Identities = 29/117 (24%), Positives = 48/117 (40%), Gaps = 13/117 (11%)
Query: 43 ETAKKIDKLIKNAP-------YSNDDIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADR 95
E + I K N P Y ++ + NHN IK F P+ +++ L +
Sbjct: 86 EKIEVIQKFFPNFPKETLLNNYQKENSLYNHNLIKVVGFIPY-ATMQSLYTKLIQTQGIF 144
Query: 96 NKALEVKDY----LESQTKRKVFIDSLFWDYKDDVLNKLARYDDISKIEDAFTLILR 148
+ L+ + Y L S V + SL D KDD N+ ++ + IE + L+
Sbjct: 145 VRPLDKRYYPNNALASHVLGYVGVASL-QDLKDDEENQYSQIVGKTGIEKEYNKFLQ 200
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 23.1 bits (48), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 198 GYLTLSFEQEQGLEIKIENDISLFL 222
GYL + F + G+ + I N I LFL
Sbjct: 265 GYLGIYFFKGGGISLNIVNTIFLFL 289
>ref|NP_222987.1| QUEUINE TRNA-RIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 371
Score = 23.1 bits (48), Expect = 7.0
Identities = 21/79 (26%), Positives = 31/79 (38%), Gaps = 1/79 (1%)
Query: 52 IKNAPYSNDDIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEVKDYLE-SQTK 110
IKNAPY DD + N A K L + ++A + YLE +
Sbjct: 287 IKNAPYKLDDTPIEENCACYACKRYSKAYLHHLFRAKELTYARLASLHNLHFYLELVKNA 346
Query: 111 RKVFIDSLFWDYKDDVLNK 129
R ++ F +K + L K
Sbjct: 347 RNAILEKRFLSFKKEFLEK 365
>ref|NP_222919.1| SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE [Helicobacter pylori J99]
Length = 388
Score = 23.1 bits (48), Expect = 7.0
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 147 LRESLQDMIEKCPYFVFLQSSNSVSFNQNLLKIT 180
L+E L+ +++ PY + L+SS+S + K+T
Sbjct: 280 LKEYLEKVLKDLPYTLELESSSSPFITASHSKLT 313
>ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 227
Score = 23.1 bits (48), Expect = 7.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 185 IYEELKIAHSISKGYLTLS 203
++E L I ++ KG+LTL+
Sbjct: 156 VFESLAIKEALGKGFLTLT 174
>ref|NP_223888.1| SHIKIMATE 5-DEHYDROGENASE [Helicobacter pylori J99]
Length = 266
Score = 22.7 bits (47), Expect = 9.1
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 168 NSVSFNQNLLKITYSAWIYEELKIAHSISKGYLT--LSFEQEQGLEIKIENDISLFLKS 224
N + N+ +LK ++E K+A+ ++ G+LT LS +E + + D+ ++ S
Sbjct: 189 NELPLNKEVLK-----GYFKESKLAYDLAYGFLTPFLSLAKELKIPFQDGKDMLIYQAS 242
>ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 767
Score = 22.7 bits (47), Expect = 9.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 50 KLIKNAPYSNDDIVLNHNKIKEAF 73
+ + NA N ++V+N NK+K+ F
Sbjct: 371 RYVMNAFEPNLNLVVNTNKVKQTF 394
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 22.7 bits (47), Expect = 9.1
Identities = 20/72 (27%), Positives = 31/72 (42%), Gaps = 11/72 (15%)
Query: 42 DETAKKIDKLIKNAPYSNDDIVLNHNKIKEAFFSPFKPQLKNAQVFLSHSHADRNKALEV 101
++ K KL+ N +D+V KIKE A+V L NK +
Sbjct: 41 EDALKARKKLLNNTHDFLEDLVFRKQKIKELVD-------YRAKVLLDL----ENKYKKE 89
Query: 102 KDYLESQTKRKV 113
K+ LE +T+ K+
Sbjct: 90 KEALEKETRGKI 101
>ref|NP_223102.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 733
Score = 22.7 bits (47), Expect = 9.1
Identities = 12/47 (25%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 9 YIMKAFKVDLDSSENQSILKPSARSSNNQAHQ--VDETAKKIDKLIK 53
Y+ + F +DL + S +KP A ++ + + E + ID+++K
Sbjct: 348 YLSQKFGLDLSEKPHSSKIKPHAPTTKTKTPEEIKREEEQAIDEVLK 394
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.132 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,044
Number of Sequences: 1491
Number of extensions: 11988
Number of successful extensions: 74
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 35
length of query: 239
length of database: 494,079
effective HSP length: 75
effective length of query: 164
effective length of database: 382,254
effective search space: 62689656
effective search space used: 62689656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)