BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646047|ref|NP_208229.1| conserved hypothetical
lipoprotein [Helicobacter pylori 26695]
(338 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224049.1| putative [Helicobacter pylori J99] 73 9e-15
ref|NP_223787.1| putative [Helicobacter pylori J99] 30 0.069
ref|NP_223610.1| putative [Helicobacter pylori J99] 30 0.12
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 29 0.15
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 28 0.26
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 28 0.26
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 28 0.26
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 28 0.34
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 28 0.44
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 27 0.58
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 27 0.58
ref|NP_223546.1| putative [Helicobacter pylori J99] 27 0.76
ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 27 0.76
ref|NP_222827.1| putative [Helicobacter pylori J99] 27 0.76
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 27 0.99
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 27 0.99
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 27 0.99
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 27 0.99
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 26 1.3
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 26 1.3
ref|NP_222748.1| putative [Helicobacter pylori J99] 26 1.3
ref|NP_222911.1| putative [Helicobacter pylori J99] 26 1.7
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 26 1.7
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 26 1.7
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 2.2
ref|NP_223731.1| putative [Helicobacter pylori J99] 25 2.2
ref|NP_223965.1| putative [Helicobacter pylori J99] 25 3.8
ref|NP_223405.1| putative [Helicobacter pylori J99] 25 3.8
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 25 3.8
ref|NP_223515.1| putative [Helicobacter pylori J99] 24 4.9
ref|NP_223415.1| putative [Helicobacter pylori J99] 24 4.9
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 24 4.9
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 24 4.9
ref|NP_223250.1| ENDONUCLEASE III [Helicobacter pylori J99] 24 4.9
ref|NP_223238.1| putative [Helicobacter pylori J99] 24 4.9
ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicoba... 24 4.9
ref|NP_223176.1| putative [Helicobacter pylori J99] 24 4.9
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 24 4.9
ref|NP_222780.1| putative [Helicobacter pylori J99] 24 4.9
ref|NP_224090.1| putative [Helicobacter pylori J99] 24 6.4
ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99] 24 6.4
ref|NP_223659.1| putative [Helicobacter pylori J99] 24 6.4
ref|NP_223368.1| putative [Helicobacter pylori J99] 24 6.4
ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99] 23 8.4
ref|NP_223331.1| putative [Helicobacter pylori J99] 23 8.4
ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFE... 23 8.4
ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 23 8.4
>ref|NP_224049.1| putative [Helicobacter pylori J99]
Length = 161
Score = 73.2 bits (178), Expect = 9e-15
Identities = 51/122 (41%), Positives = 68/122 (54%), Gaps = 23/122 (18%)
Query: 1 MFFKTYQKLLGASCLTLYLAGCGS-DSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLN 59
MFFKTYQKLLGASCL LYL GCG+ E V + NS T +I SK D+I IQ +KLN
Sbjct: 1 MFFKTYQKLLGASCLALYLVGCGNGGGGESPVEMIANS-EGTFQIDSKADSITIQGVKLN 59
Query: 60 RGNCEHDQNFL------------------VKLIQETANTYLFASEKEKAIKNHQAKIARL 101
RGNC NF+ ++ ++ A+TY +K K + N KI++L
Sbjct: 60 RGNCA--VNFVPVSETFQMGVLSQVTPISIQDFKDMASTYKIFDQK-KGLANIANKISQL 116
Query: 102 QK 103
++
Sbjct: 117 EQ 118
Score = 45.4 bits (106), Expect = 2e-06
Identities = 26/77 (33%), Positives = 42/77 (53%), Gaps = 1/77 (1%)
Query: 263 ISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY-LKFGESFTAHYKCQNLI 321
IS ++ A+ K+ + K+ + + I LE K + L FGES + N+I
Sbjct: 85 ISIQDFKDMASTYKIFDQKKGLANIANKISQLEQKGVMMEPQTLNFGESLKGISQGCNII 144
Query: 322 EVGVKTDKGSWTFNFNR 338
E ++TDKG+WTFNF++
Sbjct: 145 EAEIQTDKGAWTFNFDK 161
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 30.4 bits (67), Expect = 0.069
Identities = 41/160 (25%), Positives = 69/160 (42%), Gaps = 31/160 (19%)
Query: 146 VKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDD 205
+KR+++ L S K +++ + K + + ++ KN D +K+L K + I +
Sbjct: 352 LKRIIETLRS-KIKANQQKMIDKSKEMSRNFKLDSNKNEIDA----IKDLIKKANEQITN 406
Query: 206 HGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVGKFYFASLKEAIPRHAKEVT--DKMI 263
H NE + K+ KS KF K I + K+ +K I
Sbjct: 407 H--------NETIKDIEKQK-------KSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGI 451
Query: 264 SSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSV 303
++ EK I NQ K + K+E IK+LE KN +S+
Sbjct: 452 NNLEKEISENQEK-------VKKLENEIKELE--KNMVSI 482
Score = 24.6 bits (52), Expect = 3.8
Identities = 21/97 (21%), Positives = 41/97 (41%), Gaps = 20/97 (20%)
Query: 35 KNSFNSTVKIISKTD------NIEIQDLKLNRGNC-EHDQNFLVKLIQETANTYLFASEK 87
KN ++ +I K + N I+D++ + +C E FL+ +E
Sbjct: 387 KNEIDAIKDLIKKANEQITNHNETIKDIEKQKKSCKEQTWKFLI-------------NEF 433
Query: 88 EKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLEN 124
+ I+ + K L+K + L + + ++ K LEN
Sbjct: 434 KSDIQEYNKKYCGLEKGINNLEKEISENQEKVKKLEN 470
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 29.6 bits (65), Expect = 0.12
Identities = 33/156 (21%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 54 QDLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEEL-TQHV 112
+DL + E ++ L +E L S+ E+ +++ AKIA +QK + E+ ++
Sbjct: 30 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE 89
Query: 113 QQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDS---YKYESDDVLDVPYE 169
+S N+++ D + + R ++NL + +K E +VL
Sbjct: 90 LRSLNIEE------------DIAKERSNQ----ANREIENLQNEIKHKSEKQEVLKKEML 133
Query: 170 KLLEISIAIE-----DTKNPKDYPYINLKELKKLID 200
+L ++++ +E + KN K+ I K+ ++L++
Sbjct: 134 ELEKLALELENLVENEVKNIKETQQIIFKKKEELVE 169
Score = 26.6 bits (57), Expect = 0.99
Identities = 13/60 (21%), Positives = 28/60 (46%)
Query: 52 EIQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQH 111
E++ L + + N + I+ N SEK++ +K ++ +L +LE L ++
Sbjct: 89 ELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLELEKLALELENLVEN 148
Score = 26.6 bits (57), Expect = 0.99
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 159 ESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYS 218
E D + + EK ++ A+ D K K+ +NL+E K + + NE +
Sbjct: 17 EIDSLEPLIREKRKDLDKALND-KEAKNKAILNLEEEKLALKLQVSK---------NEQT 66
Query: 219 NRVSKKGLQILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLT 278
+ + + + K S S + +++E I + ++ I + + IK K
Sbjct: 67 LQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQE 126
Query: 279 EAKQDIDKMEKIIKDLES 296
K+++ ++EK+ +LE+
Sbjct: 127 VLKKEMLELEKLALELEN 144
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 29.3 bits (64), Expect = 0.15
Identities = 23/79 (29%), Positives = 38/79 (47%), Gaps = 6/79 (7%)
Query: 245 ASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY 304
A+ KE + EV ++ I E K + L EA +++ EKI+ L+ NTL
Sbjct: 499 AAPKENQTENKTEVKEEKI---EVPTKTTYLLLEEAGINLETYEKILALLQKSNNTL--- 552
Query: 305 LKFGESFTAHYKCQNLIEV 323
L GE +H + N+ ++
Sbjct: 553 LVVGEEIYSHKQAHNIAKM 571
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 28.5 bits (62), Expect = 0.26
Identities = 29/120 (24%), Positives = 48/120 (39%), Gaps = 11/120 (9%)
Query: 79 NTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTK 138
N E+ + I N Q KI +L + E+T N ++ L+N T+
Sbjct: 42 NNPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTP------TE 95
Query: 139 DDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKL 198
Y ++ L N++ S V P KL++ A+E + P P ++ LK L
Sbjct: 96 KQAETYYLQSTLQNIEKIVMLSGGVASNP--KLVQ---ALEKMQEPITNPLELVENLKNL 150
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 28.5 bits (62), Expect = 0.26
Identities = 16/46 (34%), Positives = 27/46 (57%), Gaps = 1/46 (2%)
Query: 266 EEKSIKANQVKLT-EAKQDIDKMEKIIKDLESKKNTLSVYLKFGES 310
E+K K +K+ E + I+ +++IK+LE K LS L+F E+
Sbjct: 182 EDKITKEEYLKIAKECLEMIENKDRLIKELELKMERLSSNLRFEEA 227
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 28.5 bits (62), Expect = 0.26
Identities = 27/120 (22%), Positives = 47/120 (38%), Gaps = 11/120 (9%)
Query: 79 NTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTK 138
N E+ + I N Q KI +L + E+T N ++ L+N T+
Sbjct: 47 NNPFLNQERIQTISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTP------TE 100
Query: 139 DDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKL 198
Y ++ L N++ S V P +++ A+E + P P ++ LK L
Sbjct: 101 KQAETYYLQSTLQNIEKIVMLSGGVASNP-----KLAQALEKMQEPITNPLELVENLKNL 155
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 28.1 bits (61), Expect = 0.34
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 22/140 (15%)
Query: 70 LVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFV 129
L K I+ + + + KE +K ++ ++QK+L Q + N + LE+ F+
Sbjct: 207 LQKEIKSKVHQKMEQTNKEYFLKE---QLKQIQKELGTDKQRDEDLNQYYQKLESIKPFL 263
Query: 130 SGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDD----------VLDVPYEKLLEISIAIE 179
+K +K+ +D L +S D +LDVP+ + + ++ I+
Sbjct: 264 KEEAFKE---------IKKQIDRLSRTHADSSDSATLQNYVETMLDVPFGQYEKKALDIK 314
Query: 180 DTKNPKDYPYINLKELKKLI 199
K D + +LK K+ I
Sbjct: 315 HVKEQLDNDHYSLKRPKERI 334
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 27.7 bits (60), Expect = 0.44
Identities = 19/64 (29%), Positives = 33/64 (50%), Gaps = 5/64 (7%)
Query: 87 KEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYK-YTKDDNPIYV 145
K++ I+N + +I L +++ Q N ++K L+N G+D Y K D+ IYV
Sbjct: 21 KKETIENFEKEINSLLENVPRQDDEEFQKNEINKFLKN----AYGYDCNTYEKVDSVIYV 76
Query: 146 VKRM 149
K +
Sbjct: 77 DKEV 80
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 27.3 bits (59), Expect = 0.58
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 247 LKEAIPRHAKEVTDKM--------ISSEEKSIKANQVKLTEAK----------QDIDKME 288
LKEA KE++ M I+++ K KLT AK + I K+E
Sbjct: 256 LKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTRAKFESLTEDLVEETISKIE 315
Query: 289 KIIKDLESKKNTLSVYLKFGES 310
+IKD KN +S + G S
Sbjct: 316 SVIKDAGLTKNEISEVVMVGGS 337
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 27.3 bits (59), Expect = 0.58
Identities = 20/85 (23%), Positives = 36/85 (41%), Gaps = 7/85 (8%)
Query: 42 VKIISKTDNIEIQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARL 101
V++++ EIQ + E NF L ++AN EKA + +
Sbjct: 466 VELVTNALGQEIQKM------LETSSNFAKDLANDSANLKECVQNLEKASNSQHKSLMET 519
Query: 102 QKDLEELTQHVQ-QSNNLDKLLENG 125
K +E +T +Q S+ + ++E G
Sbjct: 520 SKTIENITTSIQGVSSQSEAMIEQG 544
Score = 25.0 bits (53), Expect = 2.9
Identities = 33/134 (24%), Positives = 55/134 (40%), Gaps = 37/134 (27%)
Query: 14 CLTLYLAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHDQNFLVKL 73
C+ L + C S ++G+ S NS VK I K + + + +F VK
Sbjct: 14 CVALIVIVCVS-----ILGV---SLNSRVKEILKESALH---------SMQDSLHFKVKE 56
Query: 74 IQETA-NTY--------LFASEKEKAIK-----------NHQAKIARLQKDLEELTQHVQ 113
+Q NTY + + ++ IK +H A ++ KD E+L +
Sbjct: 57 VQSVLENTYTSMGIVKEMLPEDTKREIKIQLLKNFILANSHVAGVSMFFKDREDLRLTLL 116
Query: 114 QSNNLDKLLENGGL 127
+ N+ KL+EN L
Sbjct: 117 RDNDTIKLMENPSL 130
>ref|NP_223546.1| putative [Helicobacter pylori J99]
Length = 68
Score = 26.9 bits (58), Expect = 0.76
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 70 LVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKL 121
++K ++ AN Y + EK + +Q+K+ ++ ++E+ + Q+ + L
Sbjct: 1 MLKNVEMGANFYRELGKLEKQLAKYQSKVLEIKTQMKEIKKQYSQAKKDENL 52
>ref|NP_223528.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter
pylori J99]
Length = 791
Score = 26.9 bits (58), Expect = 0.76
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 1 MFFKTYQKLLGASCLTLYLAGCGSD--------SSEPLVGIEKNSFNSTVKIISKTDNIE 52
MF ++Y KL A CL L C S+ + + N F T K + + + E
Sbjct: 1 MFLRSYPKLRYALCLPLLTETCYSEERTLNKVTTQAKRIFTYNNEFKVTSKELDQRQSNE 60
Query: 53 IQDL 56
++DL
Sbjct: 61 VKDL 64
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 26.9 bits (58), Expect = 0.76
Identities = 17/92 (18%), Positives = 42/92 (45%)
Query: 33 IEKNSFNSTVKIISKTDNIEIQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIK 92
I+K+ + +I T + + ++LK+ + CE + + + +L +E + ++
Sbjct: 464 IDKSKPKPPINLIYPTQSEQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVE 523
Query: 93 NHQAKIARLQKDLEELTQHVQQSNNLDKLLEN 124
K + D EEL + +N+ +L ++
Sbjct: 524 KLHEKNKLEELDFEELENLSAEIDNVKELFDD 555
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 26.6 bits (57), Expect = 0.99
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 29/153 (18%)
Query: 165 DVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYMAD------GFLNEYS 218
D P E LL+I IA+E L+K+ + ++ G+ AD L+ Y
Sbjct: 89 DAPKEMLLQIPIALE--------------WLQKMGFTCVEVGGFEADDVIASLATLSPYK 134
Query: 219 NRVSKKGL---QILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKM-----ISSEEKSI 270
R+ K Q+L+ +++ +F E + TD S K +
Sbjct: 135 TRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGV 194
Query: 271 KA-NQVKLTEAKQDIDKMEKIIKDLESKKNTLS 302
K E Q + +EKI ++L+ KN LS
Sbjct: 195 KGIGSKNAKELLQRLGSLEKIYENLDLAKNLLS 227
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 26.6 bits (57), Expect = 0.99
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 258 VTDKMIS---SEEKSIKANQVKLTEAKQDIDKM-----EKIIKDLESKKNTLSVYLKFGE 309
+T K ++ EE ++ +++K+ +A + DKM EKIIK+L+ K + L F E
Sbjct: 586 ITPKTVTRALEEELKLRDDEIKIAKALKK-DKMPKSEREKIIKELDKKMRERAKNLDFEE 644
Query: 310 S 310
+
Sbjct: 645 A 645
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 26.6 bits (57), Expect = 0.99
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 171 LLEISIAIEDTKNPKDYPYINLK---ELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQ 227
+LE IE K + Y Y+ LK EL+ L+ S + + F +Y +R + G
Sbjct: 58 ILEEQGFIEVIKGKQRYLYVYLKDYRELECLVKSKMAKYVMYLRQFF-DYLDRKRRYGFD 116
Query: 228 ILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKMISSEEKSI 270
K FA KE++PRH + DK + S K++
Sbjct: 117 FTLK---------NLAFAKTKESLPRH---LNDKDLKSFLKTL 147
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 26.6 bits (57), Expect = 0.99
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 187 YPYINLK---ELKKLIDSIIDDHGYMADGFLNEYSNR 220
YP ++LK EL+KL++SI+D + D Y+++
Sbjct: 97 YPNLSLKQPKELRKLLESIVDTKNALTDEDKKPYTSQ 133
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 26.2 bits (56), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 165 DVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHG-YMADGFLNEYSNRVS 222
D+ Y+ +L + I NPKD+ LK + D ++D G + + FLN+ N ++
Sbjct: 182 DLTYQPVLSTKVNISVNLNPKDH-------LKGVQDFFLNDKGEIIKERFLNQDINALA 233
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 26.2 bits (56), Expect = 1.3
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 138 KDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKK 197
KD + ++V + L L+++KYE + K+L + + +D ++ + ++ LKK
Sbjct: 26 KDFDHVWVKNKKL--LETFKYEGEGAFLDQENKILYVGVKEDDVHLLRESACLAVRTLKK 83
Query: 198 LIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKL 232
L + Y D + + + K L + KL
Sbjct: 84 LAFKSVKVGVYTCDTHAKDNALLENLKALFLGLKL 118
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 26.2 bits (56), Expect = 1.3
Identities = 28/97 (28%), Positives = 43/97 (43%), Gaps = 18/97 (18%)
Query: 205 DHGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKMIS 264
D Y+AD FL EY ++ K L K P V KF E T K
Sbjct: 147 DASYLADAFLREY-RTIALKLSTALGK-----PFVNKFL---------NPKSETTMKDFM 191
Query: 265 SEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTL 301
S EK +K + + T+ K +I + +++ L+ K++ L
Sbjct: 192 SSEKFVK--KYRFTQ-KDNIKRTQELKSLLDQKRHFL 225
>ref|NP_222911.1| putative [Helicobacter pylori J99]
Length = 127
Score = 25.8 bits (55), Expect = 1.7
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 268 KSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVYLKFGESFTAHYKCQ--NLIEVGV 325
K++ N+ EA + K+E D K+ LK+ + C+ L+EV +
Sbjct: 58 KNLIVNRGNSCEATK---KVEPKFGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKI 114
Query: 326 KTDKGSWTFNFNR 338
TDKG + F++
Sbjct: 115 ITDKGEYYHKFSK 127
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 25.8 bits (55), Expect = 1.7
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 47 KTDNIEIQDLKLNRGNCEHDQNFLVKLIQETANTYLFASEKEKAIKNHQAKIARLQKD-L 105
K IEI+++KL+ ++D N+ VK +E + K +K +++ ++ D L
Sbjct: 80 KQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFK-VVLKGRESQNSKAGLDVL 138
Query: 106 EELTQHVQQSNNLDKLLENGGLFVS----------GHDYKYTKDDNP 142
+ +Q N +K + G FVS + K TK++NP
Sbjct: 139 FRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTKENNP 185
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 25.8 bits (55), Expect = 1.7
Identities = 27/118 (22%), Positives = 50/118 (41%), Gaps = 15/118 (12%)
Query: 70 LVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDK-LLENGGLF 128
LV++ QET + +S ++KN IA + + ++QS L K L+E GL
Sbjct: 303 LVQITQETQKSMKNSSTTLNSVKNKATDIASM------MNASIEQSQGLRKRLIETQGLV 356
Query: 129 VSGHDY---KYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKN 183
D +++ + + + ++ +DDV + +L+I I D N
Sbjct: 357 KESKDAIGDLFSQITESAHTEEELSSKVEQLSRNADDV-----KSILDIINDIADQTN 409
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 25.4 bits (54), Expect = 2.2
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 152 NLDSYKYESDDVLDVPYEKLL--EISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYM 209
+L SY + +LD Y K E+ IED + +++ + K + + + M
Sbjct: 791 DLKSYNEDMRRILDA-YIKTTDSEVLFQIEDQGLCEVLAQMDINDFNKALSQVFKNESSM 849
Query: 210 ADGFLNEYSNRVSKKGL---QILAKLKSMWPSV------GKFYFASLKEAIPRHAKEVTD 260
A+ N R+ +K + KL S+ + K + + I AK+V D
Sbjct: 850 AESIANNTRKRIIEKEASDPKYYEKLSSLLNDLILQFREKKLTYLEYLQQIQDLAKKVID 909
Query: 261 KMISSEEKSIKANQVK 276
K + K I +K
Sbjct: 910 KEDRNYPKKINTKALK 925
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 25.4 bits (54), Expect = 2.2
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 19 LAGCGSDSSEPLVGIEKNSFNSTVKIISKTDNIEIQ-DLKLNRGNCEHDQNFL-VKL--- 73
L G D+ E LVGI K+ ++ K S + + + D ++ N D +KL
Sbjct: 67 LKGMDKDAKE-LVGISKSYAHNNEKDRSDFERFKSRLDKAIDSFNQNLDNGAASLKLPSD 125
Query: 74 --IQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSG 131
I +T F+ E ++ Q + + +K L E ++ N LDK N F
Sbjct: 126 IDIDDTKALEKFSKSLESEKESIQNSLHQWKKQLAETNHLNKEYNTLDKTRLNAQKFQDV 185
Query: 132 HD 133
HD
Sbjct: 186 HD 187
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 24.6 bits (52), Expect = 3.8
Identities = 12/44 (27%), Positives = 22/44 (49%)
Query: 276 KLTEAKQDIDKMEKIIKDLESKKNTLSVYLKFGESFTAHYKCQN 319
KL +++++ + KIIK E ++ LK + A+Y N
Sbjct: 339 KLETLQKNLESINKIIKQNEKIAQIYALDLKTNGDYNAYYNALN 382
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 24.6 bits (52), Expect = 3.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 270 IKANQVKLTEAKQDIDKMEKIIKDLESKKNTLS 302
+ AN K+++ +DI E ++K +KN L+
Sbjct: 13 LSANTQKVSDIAKDIQHKETLLKKTHEEKNQLN 45
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 24.6 bits (52), Expect = 3.8
Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Query: 140 DNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPK 185
DN + +++ + N YK DD + VP +K+ E I + PK
Sbjct: 65 DNAL-ILQHLQQNQIPYKVLKDDTILVPKDKVYEERITLASQGIPK 109
Score = 23.9 bits (50), Expect = 6.4
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 21/142 (14%)
Query: 176 IAIEDTKNPKDYPYINLKELKKLIDSIIDDHGY-----------------MADGFLN-EY 217
IA+ED N +Y ++ + LKK+ + GY MA N
Sbjct: 376 IALEDGANALEYEPLSDESLKKINALVKQAIGYNQNRGDDVAVSNFEFNPMAPMIDNATL 435
Query: 218 SNRVSKKGLQILAKLKSMWPSVGKF--YFASLKEAIPRHAKEVTDKMISSEEKSIKANQV 275
S ++ K +IL + + F F K+ I ++ + + ++ E+K +K+
Sbjct: 436 SEKIMHKTQKILGSFTPLIKYILVFIVLFIFYKKVIVPFSERMLE-VVPDEDKEVKSMFE 494
Query: 276 KLTEAKQDIDKMEKIIKDLESK 297
++ E + +++K+ + K +E +
Sbjct: 495 EMDEEEDELNKLGDLRKKVEDQ 516
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/62 (25%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 245 ASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY 304
A+ KEA P+ + + + + E+K KA Q ++ + E+ K+LE ++ L +
Sbjct: 481 AAKKEA-PKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMN 539
Query: 305 LK 306
K
Sbjct: 540 KK 541
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 24.3 bits (51), Expect = 4.9
Identities = 23/122 (18%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 51 IEIQDLKLNRGNCEHDQNFLVKLIQ--------ETANTYLFASEKEKAIKNHQAKIARLQ 102
+E +++++ C+ Q + K +Q E +L A KE +++ + + + +
Sbjct: 57 VEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKE-FVRDEKRYLEKEK 115
Query: 103 KDLEELTQHVQQSNN-------LDKLLENGGLFVSGHDYKYTKDDNPIYVVKRMLDNLDS 155
K+LE+ Q ++Q + K + L + YTKD+ +++++ + L++
Sbjct: 116 KELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEEELEA 175
Query: 156 YK 157
K
Sbjct: 176 QK 177
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 24.3 bits (51), Expect = 4.9
Identities = 28/117 (23%), Positives = 47/117 (39%), Gaps = 9/117 (7%)
Query: 70 LVKLIQETANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDK------LLE 123
L K + E+ + A E A+K K+ + T H + NLD ++E
Sbjct: 64 LAKEVCESLPLFEGAFELISALKEKNYKVVCFSGGFDLATNHYRDLLNLDAAFSNTLIVE 123
Query: 124 NGGL--FVSGH-DYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIA 177
N L V+GH + Y+K + + + + + + D D D+ K I IA
Sbjct: 124 NNALNGLVTGHMMFSYSKGEMLLALQRLLNISKDRTLVVGDGANDLSMFKHAHIKIA 180
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 24.3 bits (51), Expect = 4.9
Identities = 21/85 (24%), Positives = 34/85 (39%), Gaps = 19/85 (22%)
Query: 89 KAIKNHQAKIARLQKDLEELTQ--HVQQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYVV 146
+A+++H A + DL + Q HV S L+ H +D
Sbjct: 362 RALESHHASVHAEANDLVKAVQEDHVTDSKYLE------------HKVHLMEDS-----A 404
Query: 147 KRMLDNLDSYKYESDDVLDVPYEKL 171
K + +N+D YE D L+ EK+
Sbjct: 405 KHVKENIDKMFYEKQDELNKIIEKI 429
>ref|NP_223250.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 214
Score = 24.3 bits (51), Expect = 4.9
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 227 QILAKLKSMWPSVGKFYFASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDK 286
QI KL +PSV ASL+E KE+ + S KS K I
Sbjct: 53 QITPKLFEKYPSVNDLALASLEE-----VKEIIQSVSYSNNKS-----------KHLISM 96
Query: 287 MEKIIKDLE 295
K++KD +
Sbjct: 97 GAKVVKDFK 105
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 78 ANTYLFASEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKY 136
A+ L E E I+ HQ ++ R +++ LTQ + K L+ G KY
Sbjct: 37 ASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRNSEYKGESDKY 95
>ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicobacter pylori J99]
Length = 438
Score = 24.3 bits (51), Expect = 4.9
Identities = 14/52 (26%), Positives = 31/52 (58%), Gaps = 3/52 (5%)
Query: 158 YESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSIIDDHGYM 209
Y +D+ P EKLLEI+ ++ +NP+++ +L + +++ + + GY+
Sbjct: 23 YHIEDLRTYPTEKLLEIANKLK-VENPQEFKRQDL--MFEILKTQVTQGGYI 71
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.3 bits (51), Expect = 4.9
Identities = 16/62 (25%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 245 ASLKEAIPRHAKEVTDKMISSEEKSIKANQVKLTEAKQDIDKMEKIIKDLESKKNTLSVY 304
A+ KEA P+ + + + + E+K KA Q ++ + E+ K+LE ++ L +
Sbjct: 390 AAKKEA-PKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMN 448
Query: 305 LK 306
K
Sbjct: 449 KK 450
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 24.3 bits (51), Expect = 4.9
Identities = 19/69 (27%), Positives = 32/69 (45%), Gaps = 14/69 (20%)
Query: 183 NPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVGKF 242
NP DYPY+N +H A E + +SK G+ I + S+ ++ +
Sbjct: 198 NPLDYPYLN-------------EHLQNASKIKLESNEAISKGGVMITSSNGSLDGNLME- 243
Query: 243 YFASLKEAI 251
F +LKE++
Sbjct: 244 RFKTLKESV 252
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 24.3 bits (51), Expect = 4.9
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 192 LKELKKLIDSIIDDHGYMADGFLNEYS------NRVSKKGLQILAKLKSMWPSVGKFYFA 245
++ LK+ D+I +++ + G L EY + KK + +LK + + +A
Sbjct: 164 IRRLKQASDAIDNEYNFPTPGVLLEYDFERPAISYTPKKSV-FNERLKDLRENFSASLYA 222
Query: 246 SLKEAIPRHA--KEVTDKMISSEEKSIK 271
LK+ I +A + ++MI+ E+ +
Sbjct: 223 DLKDKIHHNALSNDDLERMIAFREQEFE 250
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 23.9 bits (50), Expect = 6.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 85 SEKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLL 122
+EKE +K +KI L++ LE+ ++ S K L
Sbjct: 18 NEKETPLKGIHSKIPSLKQALEQTISKIKSSKEFFKQL 55
>ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
Length = 455
Score = 23.9 bits (50), Expect = 6.4
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 7/57 (12%)
Query: 43 KIISKTDNIEIQDLKLNRGNCEH-------DQNFLVKLIQETANTYLFASEKEKAIK 92
K I+K +IE+Q L GN H Q KLI+ET L S +++ ++
Sbjct: 212 KFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESVRKRLLE 268
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 23.9 bits (50), Expect = 6.4
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 143 IYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNPKDYPYINLKELKKLIDSI 202
+YV + L LD+ K + D L + A+E K+P+D +N K+ + +
Sbjct: 224 LYVNEPKLKELDNIKLQLQD--------LEKEEKALEQIKSPQDEWDLNKALQKEYLQEL 275
Query: 203 IDDHGYMADGFLNEYSNRVSKK 224
D + A N +S + +K
Sbjct: 276 KDKNKAKALDIQNNHSTPLKQK 297
>ref|NP_223368.1| putative [Helicobacter pylori J99]
Length = 406
Score = 23.9 bits (50), Expect = 6.4
Identities = 31/150 (20%), Positives = 58/150 (38%), Gaps = 43/150 (28%)
Query: 183 NPKDYPYINLKELKKLIDSIIDDHGYMADGFLNEYSNRVSKKGLQILAKLKSMWPSVGKF 242
NP Y +KE+K ID + ++ ++ +G E + L KL SM+ G+
Sbjct: 162 NPNMY---GVKEIKDKIDKQLHNNDHLFEGLFGEKED---------LKKLVSMF---GQL 206
Query: 243 YFASLKEAIPRHAKE----------VTDKMISSEEKSIKANQVK---------------- 276
F PR + + ++S + K+ K+ ++
Sbjct: 207 RFQKRWSQTPRVPQTSVLGHTLCVAIMGYLLSFDLKACKSMRINHFLGGLFHDLPEILTR 266
Query: 277 --LTEAKQDIDKMEKIIKDLESKKNTLSVY 304
+T KQ + ++ IK++E K+ VY
Sbjct: 267 DIITPIKQSVAGLDHCIKEIEKKEMQNKVY 296
>ref|NP_223637.1| topoisomerase I [Helicobacter pylori J99]
Length = 425
Score = 23.5 bits (49), Expect = 8.4
Identities = 17/78 (21%), Positives = 36/78 (45%), Gaps = 2/78 (2%)
Query: 125 GGLFVSGHDYKYTKDDNPIYVVKRMLDNLDSYKYESDDVLDVPYEKLLEISIAIEDTKNP 184
GG FV + + K+ NPI+ +K+ D + +++ +K+ + IA + +
Sbjct: 31 GGHFVELVNIEVNKEFNPIFEIKKSTDKKKDRSTHINHMINQCKDKV--VYIATDPDREG 88
Query: 185 KDYPYINLKELKKLIDSI 202
Y +++K L +I
Sbjct: 89 YGIGYKFYEKIKNLAKTI 106
>ref|NP_223331.1| putative [Helicobacter pylori J99]
Length = 1167
Score = 23.5 bits (49), Expect = 8.4
Identities = 16/54 (29%), Positives = 25/54 (45%), Gaps = 12/54 (22%)
Query: 285 DKMEKIIKDLESKKNTLSVYLKFGESFTAHYKCQNLIEVGVKTDKGSWTFNFNR 338
D EK+I KK+ + F A + +L GVKT + W +NF++
Sbjct: 763 DDFEKLIPLKRDKKSKI---------FNAIF---DLNSNGVKTSRDPWVYNFSQ 804
>ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFERASE [Helicobacter pylori
J99]
Length = 422
Score = 23.5 bits (49), Expect = 8.4
Identities = 11/37 (29%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 247 LKEAIPRHAKEVTDKMIS-SEEKSIKANQVKLTEAKQ 282
+ IP H + +TDK+I I+ N +++ AK+
Sbjct: 255 INHIIPNHIQAITDKLIEIGFPLDIQENSIEIYPAKK 291
>ref|NP_222873.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 225
Score = 23.5 bits (49), Expect = 8.4
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 18/108 (16%)
Query: 86 EKEKAIKNHQAKIARLQKDLEELTQHVQQSNNLDKLLENGGLFVSGHDYKYTKDDNPIYV 145
+KE+ + A I R+ KD E+ H ++ + E L +S Y +++
Sbjct: 121 KKEEVSEPGDANIFRVDKDSREVYMHEKKLDLTRAEYEILSLLISKKGYVFSR------- 173
Query: 146 VKRMLDNLDSYKYESDDVLDVPYEKLLEISIA---IEDTKNPKDYPYI 190
+S ES+ + K +++ I + KNPK YI
Sbjct: 174 --------ESIAIESESINPESSNKSIDVIIGRLRSKIEKNPKQPQYI 213
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,131
Number of Sequences: 1491
Number of extensions: 18983
Number of successful extensions: 108
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 55
length of query: 338
length of database: 494,079
effective HSP length: 78
effective length of query: 260
effective length of database: 377,781
effective search space: 98223060
effective search space used: 98223060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)