BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646048|ref|NP_208230.1| hypothetical protein
[Helicobacter pylori 26695]
(81 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224050.1| putative [Helicobacter pylori J99] 108 2e-26
ref|NP_223198.1| cag island protein [Helicobacter pylori J99] 28 0.044
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 23 1.4
ref|NP_223960.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helico... 22 3.2
ref|NP_223114.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223988.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223645.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223271.1| putative efflux transporter [Helicobacter ... 20 7.1
ref|NP_222791.1| LIPOPROTEIN SIGNAL PEPTIDASE [Helicobacter... 20 7.1
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 20 9.3
ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 20 9.3
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 20 9.3
ref|NP_223337.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_223155.1| putative [Helicobacter pylori J99] 20 9.3
>ref|NP_224050.1| putative [Helicobacter pylori J99]
Length = 141
Score = 108 bits (270), Expect = 2e-26
Identities = 56/66 (84%), Positives = 62/66 (93%), Gaps = 1/66 (1%)
Query: 1 MDNST-DRAKILIEELKILQGVINRMAQNSLECKKWTLALAVGVLSLKIEAISHLYGLCV 59
M+N+ DRA+ILIEELKILQGVINRMAQNSLECKKWTLALAVGVLSLKIEAIS+ YGLCV
Sbjct: 1 MENTPKDRARILIEELKILQGVINRMAQNSLECKKWTLALAVGVLSLKIEAISNFYGLCV 60
Query: 60 LGVFVS 65
LGV ++
Sbjct: 61 LGVLLA 66
>ref|NP_223198.1| cag island protein [Helicobacter pylori J99]
Length = 218
Score = 27.7 bits (60), Expect = 0.044
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 16/70 (22%)
Query: 13 EELKILQGVINRMAQNSLECKKWTLALAVGVLSLKIE------------AISHLYGLCVL 60
EELK + I ++ Q K++ L + +G +I + HL GLC+
Sbjct: 52 EELKNILIEIEKLPQE----KRYELLMQIGQAKQRIMEAYAHSFLGYIGGLEHLLGLCMG 107
Query: 61 GVFVSMLLFF 70
G+FV ++F
Sbjct: 108 GIFVLFAIYF 117
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 22.7 bits (47), Expect = 1.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 16 KILQGVINRMAQNSLE 31
K++QG + +MAQN L+
Sbjct: 24 KVIQGCLLKMAQNELD 39
>ref|NP_223960.1| putative [Helicobacter pylori J99]
Length = 192
Score = 22.3 bits (46), Expect = 1.9
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 13 EELKILQGVINRMAQNSLECKKWTLAL--AVGVLSLKIEAISHLYGL 57
EE+ +L+ +N A ++LE T V L +K ISHL+GL
Sbjct: 82 EEIALLRARMN--AYSTLESALLTKMCNRIVKALQVKNNVISHLFGL 126
>ref|NP_223160.1| PUTATIVE POTASSIUM CHANNEL PROTEIN [Helicobacter pylori J99]
Length = 378
Score = 21.6 bits (44), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 49 EAISHLYGLCVLGVFVSMLLFFRRLLSHARKVV 81
EAI H Y ++G + L + LS AR VV
Sbjct: 173 EAIKHKYPYYIIGDPHTNLAMLKTHLSSARGVV 205
>ref|NP_223114.1| putative [Helicobacter pylori J99]
Length = 178
Score = 21.6 bits (44), Expect = 3.2
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 13 EELKILQGVINRMAQNSLECKKWTLALAV 41
+EL+IL G + + Q E + L LA+
Sbjct: 18 QELEILHGYLQDVMQKGSEANQRVLNLAI 46
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 47 KIEAISHLYGLCVLGVF 63
K+EA+ H YG + G F
Sbjct: 133 KLEALIHRYGENIQGYF 149
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 20.4 bits (41), Expect = 7.1
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 13 EELKILQGVINRMAQNSLECKKWTL 37
++ KI++ I+++ +NS+ + TL
Sbjct: 789 QDYKIIKDFIDKVGKNSINLNEQTL 813
>ref|NP_223271.1| putative efflux transporter [Helicobacter pylori J99]
Length = 234
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 72 RLLSHARKVV 81
RL+SHARK+V
Sbjct: 156 RLVSHARKLV 165
>ref|NP_222791.1| LIPOPROTEIN SIGNAL PEPTIDASE [Helicobacter pylori J99]
Length = 163
Score = 20.4 bits (41), Expect = 7.1
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 39 LAVGVLSLKIEAISHLYGLCVLGVFVSMLLFFRRLLSHA 77
+A +LS + +L L +LG+F+ ++ SHA
Sbjct: 51 VAFSLLSFLEGGLKYLQILLILGLFIFLMRQKELFKSHA 89
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 53 HLYGLCVLGVFVSMLL 68
HL+GL V G F +L
Sbjct: 191 HLFGLIVSGAFAISVL 206
>ref|NP_223849.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 329
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 6 DRAKILIEELKILQGVIN 23
D ++ IEELK+ Q + N
Sbjct: 118 DAMRLKIEELKLSQNIDN 135
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 20.0 bits (40), Expect = 9.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 9 KILIEELKILQGVI 22
KIL+EELK GV+
Sbjct: 365 KILVEELKPDTGVV 378
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 20.0 bits (40), Expect = 9.3
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 15 LKILQGVINRMAQNSLECKKWTLALAVGVL 44
+ ILQ V++ + L KK +L ++G+L
Sbjct: 46 ISILQMVLSSFVGSVLNFKKKSLDFSLGLL 75
>ref|NP_223155.1| putative [Helicobacter pylori J99]
Length = 314
Score = 20.0 bits (40), Expect = 9.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 51 ISHLYGLCVLGVFV 64
I+H G C GVF+
Sbjct: 43 INHTKGFCAKGVFL 56
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.141 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,706
Number of Sequences: 1491
Number of extensions: 2413
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 81
length of database: 494,079
effective HSP length: 57
effective length of query: 24
effective length of database: 409,092
effective search space: 9818208
effective search space used: 9818208
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 40 (20.0 bits)