BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646050|ref|NP_208232.1| peptidyl-prolyl cis-trans
isomerase B, cyclosporin-type rotamase (ppi) [Helicobacter pylori
26695]
(163 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224052.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helic... 318 4e-89
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 25 1.0
ref|NP_223621.1| putative cation efflux system protein [Hel... 23 5.2
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 23 5.2
ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99] 22 6.8
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 22 8.9
ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylor... 22 8.9
ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 22 8.9
ref|NP_222831.1| putative [Helicobacter pylori J99] 22 8.9
>ref|NP_224052.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori J99]
Length = 162
Score = 318 bits (816), Expect = 4e-89
Identities = 155/162 (95%), Positives = 157/162 (96%)
Query: 2 MDPIKTYEIKEEELAKTAYATIKTNKGNIALELFYKDAPQAVSNFVTLAKEGFYNGLNFH 61
M PIKTY+IKEEELAKTAYATIKTNKGNI LELFYKDAPQAVSNFVTLAKEGFYNGLNFH
Sbjct: 1 MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFH 60
Query: 62 RVIAGFVAQGGCPYGTGTGGPGHRIKCEVAHNPNKHKRGSISMAHAGRDTGGSQFFLCFV 121
RVIAGFVAQGGCPYGTGTGGP HRIKCEVAHNPNKH+RGSISMAHAGRDTGGSQFFLCFV
Sbjct: 61 RVIAGFVAQGGCPYGTGTGGPEHRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFV 120
Query: 122 DLPHLDGEHTVFGKITSAEGLSVLDKIKQGDIIESVVFSSSL 163
DLPHLDGEHTVFGKITSAE LSVLDKIKQGDIIESVVFS SL
Sbjct: 121 DLPHLDGEHTVFGKITSAESLSVLDKIKQGDIIESVVFSPSL 162
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 25.0 bits (53), Expect = 1.0
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 26 NKGNIALELFYKDAPQAVSNFVTLAKEGFYN 56
NK L+ YK QA S +L KEGF N
Sbjct: 148 NKTQSLLKEIYKQCLQAFSPNFSLKKEGFEN 178
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 22.7 bits (47), Expect = 5.2
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 3/49 (6%)
Query: 5 IKTYEIKEEELAKTAYATIKTNKGNIALELFYKDAPQAVSNFVTLAKEG 53
I+T + E++ K TI TN G++ ++ F K Q+ + + K+G
Sbjct: 230 IQTASLSLEDIGKI---TISTNLGHLHIKDFAKVISQSRTRLGFVTKDG 275
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 22.7 bits (47), Expect = 5.2
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 10/52 (19%)
Query: 42 AVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPGHRIKCEVAHN 93
++S ++ + GFY GLNF A+G Y G G G + E A N
Sbjct: 12 SLSFWLHAERNGFYLGLNF--------AEGS--YIQGQGSIGEKASAENALN 53
>ref|NP_223434.1| ACONITATE HYDRATASE [Helicobacter pylori J99]
Length = 852
Score = 22.3 bits (46), Expect = 6.8
Identities = 13/44 (29%), Positives = 20/44 (44%), Gaps = 1/44 (2%)
Query: 38 DAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQ-GGCPYGTGTG 80
DAP + +F A + ++ H + GF+ Q GG G G
Sbjct: 425 DAPFVLQSFCHTAAYPKPSDVSLHATLPGFITQRGGVALHPGDG 468
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 21.9 bits (45), Expect = 8.9
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 37 KDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGC 73
+D AV +E +Y GL +H + V + GC
Sbjct: 317 EDGTGAVHTAPGHGEEDYYLGLKYHLEVLMSVDEKGC 353
>ref|NP_223522.1| FLAGELLAR HOOK PROTEIN [Helicobacter pylori J99]
Length = 718
Score = 21.9 bits (45), Expect = 8.9
Identities = 19/68 (27%), Positives = 28/68 (40%), Gaps = 3/68 (4%)
Query: 91 AHNPNKHKRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTV---FGKITSAEGLSVLDK 147
A PN + G + + G G + L F D + FG S +GL+ +DK
Sbjct: 527 AARPNVFEGGRLHFNNDGSLAGMNPPLLQFDPKNGADAPQRINLAFGSSGSFDGLTSVDK 586
Query: 148 IKQGDIIE 155
I + IE
Sbjct: 587 ISETYAIE 594
>ref|NP_222853.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 488
Score = 21.9 bits (45), Expect = 8.9
Identities = 9/21 (42%), Positives = 14/21 (65%)
Query: 116 FFLCFVDLPHLDGEHTVFGKI 136
F L F L ++ GE+ VFG++
Sbjct: 37 FELSFPSLNYIAGEYGVFGRL 57
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 21.9 bits (45), Expect = 8.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 12 EEELAKTAYATIKTNKGNIALE 33
E+E KT KTNK I LE
Sbjct: 144 EQERQKTEQERQKTNKSEIELE 165
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,594
Number of Sequences: 1491
Number of extensions: 7536
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 163
length of database: 494,079
effective HSP length: 71
effective length of query: 92
effective length of database: 388,218
effective search space: 35716056
effective search space used: 35716056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)