BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646051|ref|NP_208233.1| carbon storage regulator
(csrA) [Helicobacter pylori 26695]
(76 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224053.1| putative carbon storage regulator [Helicob... 138 2e-35
ref|NP_222840.1| putative [Helicobacter pylori J99] 26 0.17
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 23 0.85
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 23 0.85
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 23 1.1
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 23 1.5
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 23 1.5
ref|NP_222819.1| putative CYSTATHIONINE GAMMA-SYNTHASE [Hel... 22 1.9
ref|NP_223643.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_222865.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobact... 21 4.2
ref|NP_223953.1| 30S RIBOSOMAL PROTEIN S19 [Helicobacter py... 21 5.5
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 21 5.5
ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIF... 20 7.2
ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) ... 20 7.2
ref|NP_222979.1| putative [Helicobacter pylori J99] 20 7.2
>ref|NP_224053.1| putative carbon storage regulator [Helicobacter pylori J99]
Length = 76
Score = 138 bits (347), Expect = 2e-35
Identities = 73/76 (96%), Positives = 73/76 (96%)
Query: 1 MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASV 60
MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILR ELKEAIVSENQKAS
Sbjct: 1 MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRTELKEAIVSENQKASA 60
Query: 61 CVDESLLENIKKVIKP 76
VDESLLENIKKVIKP
Sbjct: 61 SVDESLLENIKKVIKP 76
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 25.8 bits (55), Expect = 0.17
Identities = 14/42 (33%), Positives = 21/42 (49%)
Query: 31 RLGFEAPESTLILRAELKEAIVSENQKASVCVDESLLENIKK 72
R+ F +T +LRAE A ++ +V ES N+KK
Sbjct: 3 RILFFLAATTFLLRAETASATINTTVDPNVMFSESSTGNVKK 44
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 23.5 bits (49), Expect = 0.85
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 33 GFEAPESTLILRAELKEAIVSENQK 57
G+E L+ LKE I+SE+QK
Sbjct: 613 GYEGLIERLLTEFPLKEPIISESQK 637
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 23.5 bits (49), Expect = 0.85
Identities = 10/21 (47%), Positives = 16/21 (75%)
Query: 7 KVNEGIVIDDNIHIKVISIDR 27
K NE ++ID+N+ VI++DR
Sbjct: 4 KKNEEVLIDENLVGGVIALDR 24
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 23.1 bits (48), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 35 EAPESTLILRAELKEAIVSENQKASVCVDESLLENIKK 72
++PE L A++ EA+ + + A CV E L++ KK
Sbjct: 256 KSPEEMAKLFADIPEALENTQEIADKCVLEIDLKDDKK 293
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 22.7 bits (47), Expect = 1.5
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 17 NIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASVCVDESLLENIKK 72
N+ + ++ DRG E L LRA ++ + S +D+ EN+ K
Sbjct: 215 NMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLESARLDDDQWENLAK 270
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 348
Score = 22.7 bits (47), Expect = 1.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 46 ELKEAIVSENQKASVCVDESLLENIKKV 73
E++ + + +AS ++ LLEN+KK+
Sbjct: 49 EIQGVVKERSYRASQGLESDLLENLKKL 76
>ref|NP_222819.1| putative CYSTATHIONINE GAMMA-SYNTHASE [Helicobacter pylori J99]
Length = 380
Score = 22.3 bits (46), Expect = 1.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 51 IVSENQKASVCVDESLLENIKKVIKP 76
++ +N + +D S L IKK IKP
Sbjct: 108 VLVKNGLSCTIIDTSDLSQIKKAIKP 133
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 30 VRLGFEAPESTLILRAELKEAIVSENQKASVCVDESLLENIKKVIKP 76
VRL F + + L E ++ +N K +++EN +KV KP
Sbjct: 165 VRLMFIKNKEPVPLVDNNGELVIDKNTKKPKHKQFAVIENGQKVFKP 211
>ref|NP_222865.1| putative [Helicobacter pylori J99]
Length = 198
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 14 IDDNIHIKVISIDR 27
ID +IH KV+ ID+
Sbjct: 67 IDGSIHSKVVGIDK 80
>ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 156
Score = 21.2 bits (43), Expect = 4.2
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Query: 1 MLILSRKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLI 42
ML S V+ G++ DNI + + GFEA STLI
Sbjct: 105 MLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEA-MSTLI 145
>ref|NP_223953.1| 30S RIBOSOMAL PROTEIN S19 [Helicobacter pylori J99]
Length = 93
Score = 20.8 bits (42), Expect = 5.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 4 LSRKVNEGIVIDDNIHIKVISIDRG 28
+SR + +G IDD++ K + G
Sbjct: 1 MSRSIKKGPFIDDHLMKKTLKAKEG 25
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 20.8 bits (42), Expect = 5.5
Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
Query: 18 IHIKVISIDRGSVRLGFEAPESTLIL-RAELKEAIVSENQKASV 60
IHI D GS + E+ ++L +LK A++ NQ+A +
Sbjct: 395 IHILSYISDIGS-NTAKDIHEALMLLGNGDLKSALIQPNQEAKI 437
>ref|NP_224140.1| putative TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT)
[Helicobacter pylori J99]
Length = 624
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 59 SVCVDESLLENIK 71
+V +D S+LEN+K
Sbjct: 259 NVIIDTSILENVK 271
Score = 20.4 bits (41), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (83%)
Query: 59 SVCVDESLLENIK 71
+V +D S+LEN+K
Sbjct: 463 NVIIDTSILENVK 475
>ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) [Helicobacter pylori
J99]
Length = 312
Score = 20.4 bits (41), Expect = 7.2
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 6 RKVNEGIVIDDNIHIKVISIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASV 60
+K+N+ ++ + I+ + ++RG + S LR + A + +N K +
Sbjct: 38 KKLNDALISKGSAPIEQVDLERGLKAALYVIAISVQHLREWFQNASLPKNAKVLI 92
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 20.4 bits (41), Expect = 7.2
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 46 ELKEAIVSENQKASV 60
ELK+ ++ EN+K SV
Sbjct: 48 ELKKILLEENRKKSV 62
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.137 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,701
Number of Sequences: 1491
Number of extensions: 2117
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 76
length of database: 494,079
effective HSP length: 52
effective length of query: 24
effective length of database: 416,547
effective search space: 9997128
effective search space used: 9997128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)