BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644775|ref|NP_206945.1| cbb3-type cytochrome c
oxidase subunit Q (CcoQ) [Helicobacter pylori 26695]
(73 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222855.1| putative Cytochrome oxidase (CBB3-TYPE) [H... 144 4e-37
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 24 0.51
ref|NP_223661.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pyl... 22 1.9
ref|NP_223412.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobact... 22 3.3
ref|NP_224017.1| putative ribonuclease N [Helicobacter pylo... 21 4.3
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 21 4.3
ref|NP_223455.1| putative MOLYBDOPTERIN CONVERTING FACTOR, ... 21 5.6
ref|NP_224188.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 20 7.3
ref|NP_223018.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_222884.1| ELONGATION FACTOR P (EF-P) [Helicobacter p... 20 7.3
ref|NP_222881.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 20 9.5
>ref|NP_222855.1| putative Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 72
Score = 144 bits (362), Expect = 4e-37
Identities = 69/72 (95%), Positives = 71/72 (97%)
Query: 2 MDLESLRGFAYAFFTILFTLFLYAYIFSMYRKQKKGIMDYERYGYLALNDALEDELIEPR 61
MDLESLRGFAYAFFTILFTLFLYAYIFSMYRKQKKGI+DYERYGYLALNDALEDELIEPR
Sbjct: 1 MDLESLRGFAYAFFTILFTLFLYAYIFSMYRKQKKGIVDYERYGYLALNDALEDELIEPR 60
Query: 62 HKKVHDNGIKES 73
HK+VHD GIKES
Sbjct: 61 HKEVHDKGIKES 72
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 24.3 bits (51), Expect = 0.51
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 7/56 (12%)
Query: 24 YAYIFS-----MYRKQKKGIMDYERYGYLALNDALEDELIEPRHKKVH--DNGIKE 72
Y IFS Y +++K Y+ YL + L D L EP K H DN +E
Sbjct: 241 YGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEE 296
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 22.3 bits (46), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (49%)
Query: 32 RKQKKGIMDYERYGYLALNDALEDELIEPRHKKVHDNGIKES 73
+K+K+ + LN ALE+ I+ R K D G KE+
Sbjct: 89 KKEKEILQPLNANEKQVLNTALENNEIDARTFKPWDLGSKEA 130
>ref|NP_223479.1| HOMOSERINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 421
Score = 22.3 bits (46), Expect = 1.9
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 4/42 (9%)
Query: 26 YIFS-MYRKQ---KKGIMDYERYGYLALNDALEDELIEPRHK 63
YI S M++ Q K + D + GY LN + + I+ HK
Sbjct: 160 YILSQMFKNQASFKDALKDAQHLGYAELNPEFDIKGIDAAHK 201
>ref|NP_223412.1| putative [Helicobacter pylori J99]
Length = 292
Score = 22.3 bits (46), Expect = 1.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 13 AFFTILFTLFLYAYIFSMYRKQKKGI 38
AFF+ L F I S++ K+ KG+
Sbjct: 70 AFFSALAQKFQVVLIASLFEKRAKGL 95
>ref|NP_223343.1| FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 248
Score = 21.6 bits (44), Expect = 3.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 57 LIEPRHKKVHDNGIK 71
++EP KK +D GIK
Sbjct: 102 IMEPSLKKAYDTGIK 116
>ref|NP_224017.1| putative ribonuclease N [Helicobacter pylori J99]
Length = 292
Score = 21.2 bits (43), Expect = 4.3
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 12 YAFFTILFTL 21
YAFF ILFT+
Sbjct: 189 YAFFLILFTI 198
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 21.2 bits (43), Expect = 4.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 11 AYAFFTILFTLFLYAYIFSMYRKQKKGIMDYERYGYLALND 51
+Y F + F L + + + + RKQ + +D A+N+
Sbjct: 767 SYGFLGLCFVLGILSLVLFILRKQGRFNLDKTILSISAINE 807
>ref|NP_223455.1| putative MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 1 [Helicobacter
pylori J99]
Length = 73
Score = 20.8 bits (42), Expect = 5.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 33 KQKKGIMDYERYGYLALNDALEDELIEP 60
++K+G+ ++ +ALND L D L P
Sbjct: 30 QEKEGLKEWLGVCAIALNDHLIDNLDMP 57
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 20.4 bits (41), Expect = 7.3
Identities = 7/27 (25%), Positives = 18/27 (65%)
Query: 33 KQKKGIMDYERYGYLALNDALEDELIE 59
K+KKG+ + + ++ + AL+ +++E
Sbjct: 186 KKKKGVELFHKANKISGHQALDSDILE 212
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 20.4 bits (41), Expect = 7.3
Identities = 12/27 (44%), Positives = 13/27 (47%), Gaps = 1/27 (3%)
Query: 25 AYIFSMYRKQKKGIMDYERYGYLALND 51
AY+ KKGI D ER Y L D
Sbjct: 235 AYLKDYNENLKKGIQDLERL-YQLLGD 260
>ref|NP_223018.1| putative [Helicobacter pylori J99]
Length = 381
Score = 20.4 bits (41), Expect = 7.3
Identities = 11/24 (45%), Positives = 13/24 (53%), Gaps = 4/24 (16%)
Query: 9 GFAYAFFTILFTLFL----YAYIF 28
G A F+ LFT+FL Y IF
Sbjct: 333 GIFQALFSYLFTIFLGDLGYVLIF 356
>ref|NP_222884.1| ELONGATION FACTOR P (EF-P) [Helicobacter pylori J99]
Length = 187
Score = 20.4 bits (41), Expect = 7.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 39 MDYERYGYLALNDA 52
MD E Y +ALND+
Sbjct: 84 MDIESYEQIALNDS 97
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 20.4 bits (41), Expect = 7.3
Identities = 13/31 (41%), Positives = 15/31 (47%)
Query: 4 LESLRGFAYAFFTILFTLFLYAYIFSMYRKQ 34
L SL F F T+L TL L Y F K+
Sbjct: 211 LFSLIPFFNFFATLLQTLMLTHYFFIFKEKE 241
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 13 AFFTILFTLFLYAYIFSMYRKQ 34
+F L + F Y FS+ RKQ
Sbjct: 79 SFLESLKSCFFQTYSFSLTRKQ 100
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.144 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,532
Number of Sequences: 1491
Number of extensions: 3150
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 73
length of database: 494,079
effective HSP length: 49
effective length of query: 24
effective length of database: 421,020
effective search space: 10104480
effective search space used: 10104480
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)