BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646054|ref|NP_208236.1| biopolymer transport
protein (exbB) [Helicobacter pylori 26695]
(150 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224056.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 291 5e-81
ref|NP_223976.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 119 5e-29
ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 53 3e-09
ref|NP_223819.1| putative [Helicobacter pylori J99] 31 0.013
ref|NP_223469.1| putative CHEMOTAXIS PROTEIN (MOTILITY PROT... 31 0.013
ref|NP_223823.1| putative nucleoside transporter [Helicobac... 30 0.037
ref|NP_223104.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 5.9
ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Heli... 22 7.7
ref|NP_223187.1| putative cag island protein [Helicobacter ... 22 7.7
>ref|NP_224056.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 150
Score = 291 bits (745), Expect = 5e-81
Identities = 149/150 (99%), Positives = 150/150 (99%)
Query: 1 MKEMVDYGIIGFLIFLSVIVIAIAIERLWFFATLRVDDYTDRRKLELALHKRLTLVATIG 60
MKEMVDYGIIGFLIFLSVIVIAIAIERLWFFATLRVDDYTDRRKLELALHKRLTLVATIG
Sbjct: 1 MKEMVDYGIIGFLIFLSVIVIAIAIERLWFFATLRVDDYTDRRKLELALHKRLTLVATIG 60
Query: 61 SNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLLVAIPAIVIYNL 120
SNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLLVAIPAIVIYNL
Sbjct: 61 SNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLLVAIPAIVIYNL 120
Query: 121 LVRKSEILVTKWDIFHHPVDTQSHEIYSKA 150
LVRKSEILVTKWDIFHHPVDTQSHE+YSKA
Sbjct: 121 LVRKSEILVTKWDIFHHPVDTQSHEVYSKA 150
>ref|NP_223976.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 145
Score = 119 bits (297), Expect = 5e-29
Identities = 62/134 (46%), Positives = 88/134 (65%)
Query: 1 MKEMVDYGIIGFLIFLSVIVIAIAIERLWFFATLRVDDYTDRRKLELALHKRLTLVATIG 60
+K+ VD + L S + + IER+ F++ + + Y D L L L K LT++ I
Sbjct: 9 LKDYVDVFVFAVLGVASFLALWFVIERVIFYSKVDLKAYDDIDALNLDLTKNLTILYVIF 68
Query: 61 SNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLLVAIPAIVIYNL 120
SNAPY+GLLGTV+GIM+ F D+G + G+D K IM L+LALKAT +GL VAIP ++ YN
Sbjct: 69 SNAPYVGLLGTVLGIMVIFYDMGVSGGMDAKTIMVGLSLALKATALGLAVAIPTLIAYNS 128
Query: 121 LVRKSEILVTKWDI 134
L+RKS++L K+ I
Sbjct: 129 LLRKSDVLSEKFRI 142
>ref|NP_223775.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 189
Score = 53.1 bits (126), Expect = 3e-09
Identities = 30/72 (41%), Positives = 42/72 (57%)
Query: 53 LTLVATIGSNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLLVAI 112
L +++ I S AP+IGL GTV+ I+ F +LG+ I ++ AL AT G+L AI
Sbjct: 99 LVVLSIISSTAPFIGLFGTVVEILEAFNNLGALGQASFGVIAPIISKALIATAAGILAAI 158
Query: 113 PAIVIYNLLVRK 124
PA Y +L RK
Sbjct: 159 PAYSFYLILKRK 170
>ref|NP_223819.1| putative [Helicobacter pylori J99]
Length = 435
Score = 31.2 bits (69), Expect = 0.013
Identities = 34/122 (27%), Positives = 51/122 (40%), Gaps = 21/122 (17%)
Query: 13 LIFLSVIVIAIAIERLWFFATL-----RVDDYTDRRK-LELALHKRLTLVATIGSNAPYI 66
L+ + VI+ + TL + D + D K EL VA++GS
Sbjct: 244 LVLVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELERTLEADAVASLGS----- 298
Query: 67 GLLGTVMGIMLTFMDLGSASGIDT------KAIMTNLALALKATGMGLLVAIPAIVIYNL 120
V+G+ T + SASG++ A+ T L L + LL AIP+ IY +
Sbjct: 299 ----AVVGVSTTTAFIESASGVEEGGRTGLTAVFTGLFFVLTLFCLPLLKAIPSNAIYPV 354
Query: 121 LV 122
LV
Sbjct: 355 LV 356
>ref|NP_223469.1| putative CHEMOTAXIS PROTEIN (MOTILITY PROTEIN A) [Helicobacter
pylori J99]
Length = 257
Score = 31.2 bits (69), Expect = 0.013
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 58 TIGSNAPYIGLLGTVMGIMLTFMDLGSASGIDTKAIMTNLALALKATGMGLL 109
T G AP +GL+G VMG+ML L + + + +A A AT G++
Sbjct: 148 TAGETAPTMGLVGAVMGLMLALQKLDNPA-----EMAAGIAGAFTATVTGIM 194
>ref|NP_223823.1| putative nucleoside transporter [Helicobacter pylori J99]
Length = 418
Score = 29.6 bits (65), Expect = 0.037
Identities = 26/84 (30%), Positives = 38/84 (44%), Gaps = 6/84 (7%)
Query: 45 LELALHKRLTLVATIGSNAPYIGLLGTVMGIM-LTFMDLGSASGIDTKAIMTNLALALKA 103
L LALH L+A +G A GLLG V G + + + LG G K + L +
Sbjct: 254 LHLALHVGAMLLAFVGMLALVNGLLGVVGGFLGMEHLSLGVVLGTLLKPLAFMLGVPWSQ 313
Query: 104 TG-----MGLLVAIPAIVIYNLLV 122
G +G+ +A+ V Y L+
Sbjct: 314 AGIAGEIIGIKIALNEFVGYMQLL 337
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 22.7 bits (47), Expect = 4.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 8 GIIGFLIFLSVIVIAIAI 25
GIIGFLI+L +++ + I
Sbjct: 349 GIIGFLIWLFFLLVIVKI 366
>ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 323
Score = 22.3 bits (46), Expect = 5.9
Identities = 17/72 (23%), Positives = 31/72 (42%), Gaps = 4/72 (5%)
Query: 3 EMVDYGIIGFLIFLSVIVIAIAIERLWFFATLRVDDYTDRRKLELALHKRLTLVATIGSN 62
E+ + GI+ ++ L I++ ++ W FA V ++ L +V I N
Sbjct: 132 ELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVH----DVILVASSVIVFKIDMN 187
Query: 63 APYIGLLGTVMG 74
I L T++G
Sbjct: 188 LEVIAALLTLIG 199
>ref|NP_223303.1| putative 3-HYDROXYACID DEHYDROGENASE [Helicobacter pylori J99]
Length = 285
Score = 21.9 bits (45), Expect = 7.7
Identities = 12/43 (27%), Positives = 21/43 (47%)
Query: 46 ELALHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDLGSASGI 88
E + K ++A +GS Y+G +G G L+ L + G+
Sbjct: 137 EEVISKLKPVLAHLGSQTFYLGKVGQGTGAKLSINSLLAQMGV 179
>ref|NP_223187.1| putative cag island protein [Helicobacter pylori J99]
Length = 115
Score = 21.9 bits (45), Expect = 7.7
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 31 FATLRVDDYTDRRKLELALHKRLTLVATIGSNAPYIGLLGTVMGIMLTFMDL 82
F ++ TD+R L L L + +G++ +GI L+F ++
Sbjct: 20 FVNFFKNNLTDKRYDSLGLIGAGVLCCVLSGAMGIVGIIFVAIGIFLSFSNI 71
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.143 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,461
Number of Sequences: 1491
Number of extensions: 4824
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 150
length of database: 494,079
effective HSP length: 70
effective length of query: 80
effective length of database: 389,709
effective search space: 31176720
effective search space used: 31176720
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)