BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15646056|ref|NP_208238.1| ribosomal protein L34
(rpl34) [Helicobacter pylori 26695]
         (44 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_224058.1|  50S RIBOSOMAL PROTEIN L34 [Helicobacter py...    93  1e-21
ref|NP_223132.1|  polyphosphate kinase [Helicobacter pylori ...    22  3.6
ref|NP_223872.1|  putative [Helicobacter pylori J99]               20  8.0
ref|NP_223724.1|  putative [Helicobacter pylori J99]               20  8.0

>ref|NP_224058.1| 50S RIBOSOMAL PROTEIN L34 [Helicobacter pylori J99]
          Length = 44

 Score = 93.2 bits (230), Expect = 1e-21
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MKRTYQPHNTPRKRTHGFLVRMKTKNGRKVINARRAKGRKKLSV 44
          MKRTYQPHNTPRKRTHGFLVRMKTKNGRKVINARRAKGRKKLSV
Sbjct: 1  MKRTYQPHNTPRKRTHGFLVRMKTKNGRKVINARRAKGRKKLSV 44



>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
          Length = 675

 Score = 21.6 bits (44), Expect = 3.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 12  RKRTHGFLVRMKTKNG 27
           RKR  G +VR++T+ G
Sbjct: 242 RKRNQGEIVRLQTQKG 257



>ref|NP_223872.1| putative [Helicobacter pylori J99]
          Length = 153

 Score = 20.4 bits (41), Expect = 8.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 7  PHNTPRKRTHGFLV 20
          P N  ++ T+GFLV
Sbjct: 49 PFNPDKRETYGFLV 62



>ref|NP_223724.1| putative [Helicobacter pylori J99]
          Length = 226

 Score = 20.4 bits (41), Expect = 8.0
 Identities = 11/32 (34%), Positives = 17/32 (52%)

Query: 13  KRTHGFLVRMKTKNGRKVINARRAKGRKKLSV 44
           K+TH  L  ++ KN  K++      G  KLS+
Sbjct: 75  KKTHLILSVIEIKNIEKILPFLNQLGVSKLSL 106



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.322    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,903
Number of Sequences: 1491
Number of extensions: 964
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 44
length of database: 494,079
effective HSP length: 20
effective length of query: 24
effective length of database: 464,259
effective search space: 11142216
effective search space used: 11142216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)