BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646064|ref|NP_208246.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224066.1| putative [Helicobacter pylori J99] 207 8e-56
ref|NP_223990.1| putative [Helicobacter pylori J99] 26 0.32
ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori... 25 0.93
ref|NP_223618.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223929.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223261.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERA... 22 4.6
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 22 4.6
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99] 22 7.9
ref|NP_223295.1| Hydrogenase expression/formation protein [... 22 7.9
>ref|NP_224066.1| putative [Helicobacter pylori J99]
Length = 113
Score = 207 bits (527), Expect = 8e-56
Identities = 103/113 (91%), Positives = 109/113 (96%)
Query: 18 MKRLAIALVLVLGVAWGKSLPKWAKDCSKGVQIEKTQTKDEKFLVCGMSDILLSDMDYSL 77
MKRLA+AL+LVLGV WGKSLPKWAKDCSK ++IEKTQTKDEK LVCGMSDILLSDMDYSL
Sbjct: 1 MKRLAVALILVLGVVWGKSLPKWAKDCSKEMRIEKTQTKDEKILVCGMSDILLSDMDYSL 60
Query: 78 SSARQNALEKVMEAFKGDKIEIKASELKATFIDTDKVYVLLKITKKHVALMNE 130
SSARQNALEKVMEAFKGD+IEIKA ELKATFIDTDKVYVLL+ITKKHVALMNE
Sbjct: 61 SSARQNALEKVMEAFKGDRIEIKAGELKATFIDTDKVYVLLRITKKHVALMNE 113
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 26.2 bits (56), Expect = 0.32
Identities = 23/86 (26%), Positives = 40/86 (45%), Gaps = 10/86 (11%)
Query: 38 PKWAKDCSKGVQIEKTQTKDEKFLVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKI 97
P + K+ S +I+K +E L I+ + YS +S + E ++A G +
Sbjct: 456 PIFEKELSNAQEIKK----NENIL------IITGNPPYSGASENKGLFEWEVKATYGIEP 505
Query: 98 EIKASELKATFIDTDKVYVLLKITKK 123
E + E++ TDK+ LLK +K
Sbjct: 506 EFQTIEIEKNVKLTDKIQTLLKNVQK 531
>ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori J99]
Length = 175
Score = 24.6 bits (52), Expect = 0.93
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 98 EIKASELKATFIDTDKVYVLLKITKKHVALMNE 130
E+ AS++ A ++ D+V+VL+ + K+ V + E
Sbjct: 136 ELIASKMLARYVGKDRVFVLVGLDKQIVDKVRE 168
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 23.9 bits (50), Expect = 1.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 77 LSSARQNALEKVMEAFKGDK----IEIKASELKATFIDTDKVYVLLK 119
L+S QN+L+ V+E+F K EIKA +L D +K Y L+
Sbjct: 56 LNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVK--DIEKTYEKLR 100
>ref|NP_223929.1| putative [Helicobacter pylori J99]
Length = 204
Score = 23.5 bits (49), Expect = 2.1
Identities = 11/35 (31%), Positives = 20/35 (56%)
Query: 89 MEAFKGDKIEIKASELKATFIDTDKVYVLLKITKK 123
+ +FKG++I + + +LKA F + Y L + K
Sbjct: 138 LPSFKGEQISLFSLDLKARFTSKNLKYPLKDLRLK 172
>ref|NP_223261.1| putative [Helicobacter pylori J99]
Length = 192
Score = 22.7 bits (47), Expect = 3.5
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 50 IEKTQTKDEKFLVCGMSDILLSDMDYSLSSARQNALEKV 88
+EK+ K ++ ++CG+ ++L +S R + L+ V
Sbjct: 2 LEKSFLKSKQLVLCGLGVLMLQACTCPNTSQRNSFLQDV 40
>ref|NP_223082.1| S-ADENOSYLMETHIONINE TRNA RIBOSYLTRANSFERASE-ISOMERASE
[Helicobacter pylori J99]
Length = 345
Score = 22.3 bits (46), Expect = 4.6
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 14/59 (23%)
Query: 82 QNALEKVMEAFK----------GDKIEIKASELKATFIDTDKVYVLLKITKKHVALMNE 130
QNALEK+++ FK G + ++ +++ I T+ +L I KK ++ E
Sbjct: 196 QNALEKLLKDFKHAFLTLHVGAGTFLSVETKDIREHQIHTE----VLHIPKKSQEILQE 250
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 22.3 bits (46), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 93 KGDKIEIKASELKATFIDTD 112
+GD I I A E+ TF +TD
Sbjct: 583 RGDLIGISALEVGKTFAETD 602
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.6 bits (44), Expect = 7.9
Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 50 IEKTQTKDEKFLVCGMSDILLSDMDYSLSSARQNALEKVMEAFKGDKIEIKASELKATFI 109
I+++ + GM ++ ++Y + ++ A+EK+ +F D +++K + +
Sbjct: 999 IDESPRTGSSMPILGMQNLNAEAVEYIQKNHKRIAVEKIEPSFAKD-LKLKYPDDARAVM 1057
Query: 110 DTDKVYVLLK 119
D + +LK
Sbjct: 1058 DYQAINHILK 1067
>ref|NP_223689.1| GMP SYNTHETASE [Helicobacter pylori J99]
Length = 508
Score = 21.6 bits (44), Expect = 7.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 81 RQNALEKVMEAFKGDKIEIKASELKATFI 109
R+N EKV FK +I + + K F+
Sbjct: 248 RKNEKEKVQAMFKDLQIPLNTIDAKEVFL 276
>ref|NP_223295.1| Hydrogenase expression/formation protein [Helicobacter pylori J99]
Length = 178
Score = 21.6 bits (44), Expect = 7.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 60 FLVCGMSDILLSDMDYSLSSARQNALEKVMEAFK 93
F+V + ++ S+ + LSS NALE ++A +
Sbjct: 116 FIVGLVPFVIGSETTFKLSSEMLNALETALKAIE 149
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,174
Number of Sequences: 1491
Number of extensions: 4495
Number of successful extensions: 20
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 494,079
effective HSP length: 68
effective length of query: 62
effective length of database: 392,691
effective search space: 24346842
effective search space used: 24346842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)