BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646065|ref|NP_208247.1| membrane-associated
lipoprotein (lpp20) [Helicobacter pylori 26695]
(175 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori... 337 8e-95
ref|NP_222937.1| putative [Helicobacter pylori J99] 29 0.081
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 25 1.2
ref|NP_224066.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 7.6
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 22 9.9
>ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori J99]
Length = 175
Score = 337 bits (865), Expect = 8e-95
Identities = 175/175 (100%), Positives = 175/175 (100%)
Query: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60
MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK
Sbjct: 1 MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEK 60
Query: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120
YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS
Sbjct: 61 YSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRS 120
Query: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK
Sbjct: 121 ISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMVKK 175
>ref|NP_222937.1| putative [Helicobacter pylori J99]
Length = 265
Score = 28.9 bits (63), Expect = 0.081
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 8 ILGMSVVAAMVIVGCSHAPKSGISKSNKAYKE 39
IL SV++A+++VG APK +S S+K ++
Sbjct: 2 ILRASVLSALLLVGLGAAPKHSVSASDKRMQD 33
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 25.0 bits (53), Expect = 1.2
Identities = 20/96 (20%), Positives = 40/96 (40%), Gaps = 6/96 (6%)
Query: 59 EKYSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGK 118
++ S + ++L+ N +Y T N++A ++ L + DAS
Sbjct: 387 KQISWISFSEPKNLLKNTSNNYQIGTVTNDQGQNISAYDCTSATGSLSS------DASSG 440
Query: 119 RSISGTDTEKISQLVDKELIASKMLARYVGKDRVFV 154
S S T + + D L+A+ + GK+++ V
Sbjct: 441 ISCSATSSTNNTNSFDNSLVATSKVQTINGKEQIGV 476
>ref|NP_224066.1| putative [Helicobacter pylori J99]
Length = 113
Score = 23.1 bits (48), Expect = 4.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 136 ELIASKMLARYVGKDRVFVLVGLDKQIVDKVRE 168
E+ A ++ A ++ D+V+VL+ + K+ V + E
Sbjct: 81 EIKAGELKATFIDTDKVYVLLRITKKHVALMNE 113
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 23.1 bits (48), Expect = 4.4
Identities = 18/69 (26%), Positives = 29/69 (41%)
Query: 40 ATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKS 99
ATKG +G +K S L A + N +D + + + + NL +
Sbjct: 1775 ATKGTQLGFIGLSTPKTHSQKVSLEALDNAHETENKNPLDKAQELLESLSSYDEKGNLIA 1834
Query: 100 TLQKDLENE 108
+K+LENE
Sbjct: 1835 PSKKELENE 1843
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 22.3 bits (46), Expect = 7.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 82 TNQATAKARANLAANLKSTLQKDLENEKTRT 112
T +ATA+ + + LK +++LE+EK ++
Sbjct: 45 TKKATAEMKERILDYLKILQKENLESEKEKS 75
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 21.9 bits (45), Expect = 9.9
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 52 LEKVAKYEKYSGVFL 66
L+K+ +Y+KYS FL
Sbjct: 133 LQKLQEYQKYSSQFL 147
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,458
Number of Sequences: 1491
Number of extensions: 6859
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 175
length of database: 494,079
effective HSP length: 72
effective length of query: 103
effective length of database: 386,727
effective search space: 39832881
effective search space used: 39832881
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)