BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646067|ref|NP_208249.1| thioredoxin [Helicobacter
pylori 26695]
(104 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224069.1| putative THIOREDOXIN [Helicobacter pylori ... 203 7e-55
ref|NP_223481.1| THIOREDOXIN [Helicobacter pylori J99] 69 3e-14
ref|NP_223963.1| FUMARASE [Helicobacter pylori J99] 25 0.35
ref|NP_223287.1| putative [Helicobacter pylori J99] 25 0.35
ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99] 23 1.3
ref|NP_223809.1| putative [Helicobacter pylori J99] 23 1.7
ref|NP_222843.1| PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLAS... 23 1.7
ref|NP_223150.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 23 2.3
ref|NP_224180.1| putative [Helicobacter pylori J99] 22 2.9
ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 2.9
ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter p... 22 2.9
ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHO... 22 3.8
ref|NP_222988.1| putative [Helicobacter pylori J99] 22 3.8
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 22 3.8
ref|NP_224003.1| putative [Helicobacter pylori J99] 22 5.0
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 22 5.0
ref|NP_223422.1| putative [Helicobacter pylori J99] 21 6.6
ref|NP_223364.1| putative [Helicobacter pylori J99] 21 6.6
ref|NP_223252.1| putative [Helicobacter pylori J99] 21 6.6
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 21 6.6
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 21 8.6
ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [He... 21 8.6
ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYL... 21 8.6
>ref|NP_224069.1| putative THIOREDOXIN [Helicobacter pylori J99]
Length = 104
Score = 203 bits (517), Expect = 7e-55
Identities = 101/104 (97%), Positives = 102/104 (97%)
Query: 1 MSEMINGKNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ 60
M E+INGKNYAEK AHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ
Sbjct: 1 MLEVINGKNYAEKTAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQ 60
Query: 61 DLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
DLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL
Sbjct: 61 DLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
>ref|NP_223481.1| THIOREDOXIN [Helicobacter pylori J99]
Length = 106
Score = 68.9 bits (167), Expect = 3e-14
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 8 KNYAEKIAHQAVVVNVGASWCPDCRKIEPIMENLAKTYKGKVEFFKVSFDESQDLKESLG 67
+N+ I +V+ A WC C+ + P+++ LA Y+GK + KV+ DE ++L G
Sbjct: 10 ENFESTIKKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFG 69
Query: 68 IRKIPTLIFYKNAKEVGERLVEPSSQKPIEDALKALL 104
IR IPTL+F K+ EV +LV ++ +++ L LL
Sbjct: 70 IRSIPTLLFTKDG-EVVHQLVGVQTKVALKEQLNKLL 105
>ref|NP_223963.1| FUMARASE [Helicobacter pylori J99]
Length = 463
Score = 25.4 bits (54), Expect = 0.35
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 33 KIEPIMENLAKTYKGKVEFFK 53
K+ P +ENL KT+K K + FK
Sbjct: 158 KLLPSLENLLKTFKEKSQQFK 178
>ref|NP_223287.1| putative [Helicobacter pylori J99]
Length = 359
Score = 25.4 bits (54), Expect = 0.35
Identities = 15/59 (25%), Positives = 26/59 (43%), Gaps = 2/59 (3%)
Query: 3 EMINGKNYAEKIAHQAVVVNVGASW--CPDCRKIEPIMENLAKTYKGKVEFFKVSFDES 59
E+ N A I + + G +W CP C +IE + ++A + ++ K D S
Sbjct: 237 ELENEIKVARAILRHSGRLKEGINWISCPTCGRIEANLVDMASKVEKRLSHIKTPLDIS 295
>ref|NP_222726.1| Carbonic anhydrase [Helicobacter pylori J99]
Length = 221
Score = 23.5 bits (49), Expect = 1.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 43 KTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIF 76
+ + G +EF + ++E ++L ESL ++ P +F
Sbjct: 2 EAFLGALEFQENEYEEFKELYESLKTKQKPHTLF 35
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 23.1 bits (48), Expect = 1.7
Identities = 9/22 (40%), Positives = 16/22 (71%)
Query: 5 INGKNYAEKIAHQAVVVNVGAS 26
+ KNY++KIA +++V +G S
Sbjct: 265 LKAKNYSQKIALSSLLVLLGVS 286
>ref|NP_222843.1| PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE [Helicobacter pylori
J99]
Length = 449
Score = 23.1 bits (48), Expect = 1.7
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 48 KVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQK 94
K+E DE + + +R P L+F A+ + ERL + K
Sbjct: 15 KIEQHPTYKDEQELERVKKELRSYPPLVFAGEARNLQERLAQVIDNK 61
>ref|NP_223150.1| putative [Helicobacter pylori J99]
Length = 599
Score = 22.7 bits (47), Expect = 2.3
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 79 NAKEVGERLVEPSSQKPIE 97
NA +VG+ +V+P++ P++
Sbjct: 279 NAMDVGDSVVDPTNPMPLD 297
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 22.7 bits (47), Expect = 2.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 53 KVSFDESQDLKESLGIRKIPTLI 75
KVSFDE ++ + ++ IP +I
Sbjct: 730 KVSFDELSEMVANKELKNIPVII 752
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 22.3 bits (46), Expect = 2.9
Identities = 16/62 (25%), Positives = 28/62 (44%), Gaps = 14/62 (22%)
Query: 29 PDCRKIEPIMENLAKTYKGKV------EFFKVSFDESQDLKESLGIRKIPTLIFYKNAKE 82
P+ ++EP++E +AK + K + + F+E + +K P KNA
Sbjct: 113 PNYCELEPLLEKMAKESENKAFYTSFRQHYNTLFNEVKQIK--------PIQSEQKNALN 164
Query: 83 VG 84
VG
Sbjct: 165 VG 166
>ref|NP_224083.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 678
Score = 22.3 bits (46), Expect = 2.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 69 RKIPTLIFYKNAKEVGERLVEPSSQKPIED 98
R+IP LI YK K ++LV+ K +E+
Sbjct: 69 RRIPVLIEYKGLK---DKLVKLDKNKLVEN 95
>ref|NP_223835.1| ELONGATION FACTOR G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 22.3 bits (46), Expect = 2.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 43 KTYKGKVEFFKVSFDESQDLKESLG 67
+ Y+GK+E ++ ++D KE +G
Sbjct: 329 RVYRGKLESGSYVYNSTKDKKERVG 353
>ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE
[Helicobacter pylori J99]
Length = 163
Score = 21.9 bits (45), Expect = 3.8
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 4/42 (9%)
Query: 36 PIMENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIFY 77
PI N Y + F+ + LK SLG+R L+FY
Sbjct: 60 PIYINPPFGYTNQPNFYNATII----LKTSLGLRHFFALVFY 97
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 21.9 bits (45), Expect = 3.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 39 ENLAKTYKGKVEFFK 53
ENLA T+ K+E F+
Sbjct: 405 ENLANTFNRKIEIFQ 419
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 21.9 bits (45), Expect = 3.8
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 3 EMINGKNYAEKIAHQ 17
E+I +N+A+ +AHQ
Sbjct: 525 EVIEARNHADSLAHQ 539
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 21.6 bits (44), Expect = 5.0
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 45 YKGKVEFFKVSFDESQDLKESLGIRKIPTLIFYKNAKEVGER 86
Y+ K + +++ D+ + K+ ++ L FY + +VGER
Sbjct: 909 YEHKADAYQLFEDKVFNPKDDPNLKIKVVLKFYGDKDDVGER 950
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 21.6 bits (44), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 34 IEPIMENLAK------TYKGKVEFFKVSFDESQ 60
++ +ENL K KGKVE + S ESQ
Sbjct: 670 VDKSVENLRKFLLESPELKGKVESYHTSTSESQ 702
>ref|NP_223422.1| putative [Helicobacter pylori J99]
Length = 182
Score = 21.2 bits (43), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 39 ENLAKTYKGKVEFFKVSFDE 58
E + + G ++FF SFDE
Sbjct: 105 EVFERYFHGTIKFFNESFDE 124
>ref|NP_223364.1| putative [Helicobacter pylori J99]
Length = 308
Score = 21.2 bits (43), Expect = 6.6
Identities = 7/22 (31%), Positives = 14/22 (62%)
Query: 78 KNAKEVGERLVEPSSQKPIEDA 99
K K++ ++ E ++KP +DA
Sbjct: 160 KEYKKIAHKIAERRAKKPFKDA 181
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 21.2 bits (43), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 38 MENLAKTYKGKVEFFKVSFDESQDLKESLGIRKIPTLIF 76
+++L YK + K+S S DLK +L K +F
Sbjct: 343 IKDLLSAYKVVLPLDKISMPSSADLKLTLQFLKNTAPLF 381
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.2 bits (43), Expect = 6.6
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 81 KEVGERLVEPSSQKPIEDALKAL 103
K+ E+L+ P ++K +E+A K++
Sbjct: 630 KKECEKLLTPEAKKKLEEAKKSV 652
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 20.8 bits (42), Expect = 8.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 53 KVSFDESQDLKESLGIRKIPTLIFYKNAKEVGERLVEPSSQKPI 96
K+S E D+ + I+K+ I K +VG+++ K I
Sbjct: 1060 KLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGI 1103
>ref|NP_223486.1| INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 481
Score = 20.8 bits (42), Expect = 8.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 54 VSFDESQDLKESLGIRKIP------TLIFYKNAKEVGERLVEPSSQK 94
+S DE+ DL I K+P L K++ +R+ P + K
Sbjct: 164 ISLDEASDLMHKHKIEKLPIVDKDNVLKGLITIKDIQKRIEYPEANK 210
>ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE [Helicobacter
pylori J99]
Length = 309
Score = 20.8 bits (42), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 48 KVEFFKVSFDESQDLKESLGIRKIPTLIFY 77
KV+ K F+E++ LKES + L+ Y
Sbjct: 40 KVDMKKTLFEENELLKESAYTQPAIYLVSY 69
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,206
Number of Sequences: 1491
Number of extensions: 4511
Number of successful extensions: 24
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 24
length of query: 104
length of database: 494,079
effective HSP length: 65
effective length of query: 39
effective length of database: 397,164
effective search space: 15489396
effective search space used: 15489396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 42 (20.8 bits)