BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646071|ref|NP_208253.1| secreted protein involved
in flagellar motility [Helicobacter pylori 26695]
(172 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224073.1| putative motility protein [Helicobacter py... 349 2e-98
ref|NP_222831.1| putative [Helicobacter pylori J99] 28 0.17
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 27 0.30
ref|NP_223176.1| putative [Helicobacter pylori J99] 27 0.30
ref|NP_223025.1| putative [Helicobacter pylori J99] 27 0.39
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 26 0.51
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 25 1.1
ref|NP_223560.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 25 1.5
ref|NP_222821.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_222813.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223651.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 24 2.5
ref|NP_222877.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223642.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223402.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 23 4.3
ref|NP_223180.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 5.6
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 23 5.6
ref|NP_224194.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_222894.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 22 7.3
ref|NP_222772.1| putative [Helicobacter pylori J99] 22 7.3
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 22 9.6
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 349 bits (896), Expect = 2e-98
Identities = 167/172 (97%), Positives = 168/172 (97%)
Query: 1 MFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKE 60
MFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKE
Sbjct: 24 MFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKE 83
Query: 61 QEQKEKRKRWYELFKKKPKPKSSMGEFVFDQKENRIYGKGYCNRYFASYVWQGDRHIGIE 120
QEQKEKRK WYELFKKKPKPKSSMGEFVFDQKENRIYGKGYCNRYFASY WQGDRHI IE
Sbjct: 84 QEQKEKRKHWYELFKKKPKPKSSMGEFVFDQKENRIYGKGYCNRYFASYTWQGDRHIAIE 143
Query: 121 DSGISRKVCKDEHLMAFELEFMENFKGNFTVTKGKDTLILDNQKMKIYLKTP 172
DSGISRKVC+DEHLMAFELEFMENFKGNF VTKGKDTLILDNQKMKIYLKTP
Sbjct: 144 DSGISRKVCRDEHLMAFELEFMENFKGNFAVTKGKDTLILDNQKMKIYLKTP 195
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 27.7 bits (60), Expect = 0.17
Identities = 21/73 (28%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
Query: 15 KVEMNHQVYDIETMLADSAFREHEEEQDSSLNT---ALPEDKTAIEAKEQEQKEKRKRWY 71
K E Q + E A+ + E E+++ ++NT + E K I+ EQ +EK
Sbjct: 184 KAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHG--- 240
Query: 72 ELFKKKPKPKSSM 84
+LF KK + K+ +
Sbjct: 241 QLFIKKARIKTGI 253
Score = 26.9 bits (58), Expect = 0.30
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 15 KVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAK------EQEQKEKRK 68
K+E Q + E + + E E+E+ + + + + I+A+ EQE+++ K
Sbjct: 142 KLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANK 201
Query: 69 RWYELFKKKPKPKSSMGEFVFDQKE 93
EL ++K K ++ + + +QK+
Sbjct: 202 SEIELEQQKQKTINTQRDLIKEQKD 226
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 26.9 bits (58), Expect = 0.30
Identities = 27/85 (31%), Positives = 38/85 (43%), Gaps = 8/85 (9%)
Query: 26 ETMLADSAFREHEEEQDSSLNTALPEDKTAIEA-KEQEQKEKRKRWYELFKKKPKPKSSM 84
ET L +S EH +E N +P ++E+ KEQE KEK K+ +L K S
Sbjct: 28 ETDLTNSF--EHGKEN----NNLIPAKSDSLESFKEQENKEKAKQLMDL-KALQSVYFSK 80
Query: 85 GEFVFDQKENRIYGKGYCNRYFASY 109
+ D N +Y G N+ Y
Sbjct: 81 NRKLQDNNFNVLYVAGNTNKIRLRY 105
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 26.9 bits (58), Expect = 0.30
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 4 KKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQ-E 62
KK + I+K E + + + A +E ++ + N E+K +A+ + +
Sbjct: 238 KKEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFD 297
Query: 63 QKEKRKRWYELFKKKPKPKSSMGEFVFDQKEN 94
KE+R+R + KK K +M EF +KE+
Sbjct: 298 AKEERRRSRDERKKTKATKKAM-EFEEREKEH 328
Score = 23.5 bits (49), Expect = 3.3
Identities = 17/82 (20%), Positives = 35/82 (41%)
Query: 14 QKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYEL 73
+KV +I A+ E+ + NT++ ++ A + + ++ KR +
Sbjct: 350 EKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKE 409
Query: 74 FKKKPKPKSSMGEFVFDQKENR 95
KKK K + EF +E++
Sbjct: 410 EKKKAKAEQRAREFEQRAREHQ 431
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 26.6 bits (57), Expect = 0.39
Identities = 17/58 (29%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
Query: 31 DSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKKPKP--KSSMGE 86
D +E+E +D S+ E ++ KE Q+E ++ YE + P+P +MGE
Sbjct: 365 DEKLQENETPKDESMQ----ESAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGE 418
Score = 22.3 bits (46), Expect = 7.3
Identities = 22/90 (24%), Positives = 39/90 (42%), Gaps = 11/90 (12%)
Query: 1 MFDKKLSSNDWHI---QKVEMNHQVYD-----IETMLADSAFREHEEEQDSSLNTALPED 52
+ KKL SN + Q ++ ++ + +E + A + E + L L E
Sbjct: 109 VLQKKLGSNASELEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQ 168
Query: 53 KTAI---EAKEQEQKEKRKRWYELFKKKPK 79
+ EA+E+ +KE+ K E K+K K
Sbjct: 169 EGETPKEEAQEEVKKEEVKEMQEEVKEKQK 198
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 26.2 bits (56), Expect = 0.51
Identities = 19/62 (30%), Positives = 33/62 (52%), Gaps = 6/62 (9%)
Query: 5 KLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTA-LPEDKTAIEAKEQEQ 63
KLSS IQ++EM Q ++E ++ H+ Q+ + L E+K +EA+ + +
Sbjct: 408 KLSSVKRSIQRLEMEKQALEMENKESN-----HKRMQEILKELSDLKEEKIQLEAQFENE 462
Query: 64 KE 65
KE
Sbjct: 463 KE 464
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 25.0 bits (53), Expect = 1.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 42 DSSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKKPKPK 81
+S+ T K E KE+ +KE+ K+ + KPKPK
Sbjct: 61 NSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPK 100
Score = 24.3 bits (51), Expect = 1.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 43 SSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKKPKPK 81
++ +A P+++ + K++E K++ + K KPKPK
Sbjct: 66 TNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPK 104
Score = 23.1 bits (48), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (55%)
Query: 50 PEDKTAIEAKEQEQKEKRKRWYELFKKKPKPK 81
P++K E ++E+ +K + K KPKPK
Sbjct: 77 PKEKPKKEEPKKEEPKKETKPKPKPKPKPKPK 108
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.0 bits (53), Expect = 1.1
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 1 MFDKKLSSNDWHIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPE--DKTAIEA 58
+F K+L + IQKV N +V I + F +++++ +SLN E D + +
Sbjct: 414 LFPKELGKVEVTIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQD 473
Query: 59 KEQEQKEKRKRWYELFKKK 77
+EQ+ + + E FK++
Sbjct: 474 SSKEQQAPKDQPKEPFKEQ 492
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 24.6 bits (52), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (44%)
Query: 30 ADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKKPKPKSSMGE 86
A+ + E E E + LN DK K+QE + K K+ K+ PK ++ E
Sbjct: 189 ANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKETPKTETPKTE 245
>ref|NP_222821.1| putative [Helicobacter pylori J99]
Length = 152
Score = 24.3 bits (51), Expect = 1.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 36 EHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKR 69
E EEQ + L E I+AK QE+K+ K+
Sbjct: 5 EWNEEQRKAFQDLLREFVALIDAKVQEKKQMGKK 38
>ref|NP_222813.1| putative [Helicobacter pylori J99]
Length = 368
Score = 24.3 bits (51), Expect = 1.9
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 14 QKVEMNHQVYDIETML-ADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYE 72
+K E + +D+ A AF EE+ ++L T+ +D + AK Q ++ +
Sbjct: 82 EKSERCFECFDLRLEASALKAFELGEEKFTTTLLTSPKKDPNQLIAKGQHIAQRHNLEFV 141
Query: 73 LFKKKPKP--KSSMG-EFVFDQKENRIYGKGYCNRYFA 107
+F+ KS + +EN +Y + YC FA
Sbjct: 142 VFRNDNFEHFKSELDLNLQALARENELYRQNYCGCQFA 179
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 23.9 bits (50), Expect = 2.5
Identities = 11/47 (23%), Positives = 26/47 (54%)
Query: 31 DSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKK 77
D + EE+++ + +T L ++ + E K +++ ++K + KKK
Sbjct: 7 DELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKK 53
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 23.9 bits (50), Expect = 2.5
Identities = 15/58 (25%), Positives = 27/58 (45%), Gaps = 7/58 (12%)
Query: 26 ETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKKPKPKSS 83
E + A+ + +++ LNTA A +A + +KE+ K +PKPK +
Sbjct: 59 EQIQANQPTKNPKQDNKDDLNTAATPKPLAKKASKTPKKEET-------KAQPKPKKT 109
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 23.9 bits (50), Expect = 2.5
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 38 EEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWYELFKKKPKPKSSMGEFVFDQKEN-RI 96
+EE D+ ++ E+ A+EAKE+ ++ ++ K+ K S+ E + +KE+
Sbjct: 3 QEELDALMSGGDLENLEALEAKEEAKEPTKEE-----PKESKENSNYSEKMTVKKEDAEK 57
Query: 97 YGK 99
YGK
Sbjct: 58 YGK 60
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 23.1 bits (48), Expect = 4.3
Identities = 9/21 (42%), Positives = 11/21 (51%)
Query: 70 WYELFKKKPKPKSSMGEFVFD 90
WYE+F K K M F+ D
Sbjct: 19 WYEMFGSNDKSKDMMKAFMKD 39
>ref|NP_223402.1| putative [Helicobacter pylori J99]
Length = 400
Score = 23.1 bits (48), Expect = 4.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 127 KVCKDEH-LMAFELEFMENFKGNFTVTKGKDTLILDNQKMKIYLKTP 172
K+ KD + L + L EN N + DT+ +D + + LKTP
Sbjct: 272 KLKKDIYDLKIYSLGLDENPTQNHALDFSFDTITIDKESVGAILKTP 318
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 23.1 bits (48), Expect = 4.3
Identities = 9/34 (26%), Positives = 17/34 (49%)
Query: 19 NHQVYDIETMLADSAFREHEEEQDSSLNTALPED 52
NHQ Y+I T + +H + ++ + L +D
Sbjct: 78 NHQSYEITTFRMEKGHIKHRKPKELVFSARLTDD 111
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 23.1 bits (48), Expect = 4.3
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 51 EDKTAIEAKEQEQKEKRKRWYELFKKKPKPKSSMGEFVFD--QKENRIYGKGYCNRYFAS 108
++K + KE+ + +K K+ Y+L K P S +FD +KE + + + +
Sbjct: 563 KEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHS---RELFDILRKEIKTLDERVTENFNSK 619
Query: 109 YVWQGDRHIGIEDSGISRKVCKDEHLMAFELEFME 143
Y+ I D + KV K + ++EF E
Sbjct: 620 YIAYKFFKINFVDIVVQNKVLK----LYLKMEFNE 650
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.7 bits (47), Expect = 5.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 153 KGKDTLILDNQKMKIY 168
KG + +LDN+K++IY
Sbjct: 367 KGHEIKLLDNKKLEIY 382
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 22.7 bits (47), Expect = 5.6
Identities = 13/42 (30%), Positives = 24/42 (56%), Gaps = 4/42 (9%)
Query: 28 MLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKR 69
++ D+ + EEQ AL ++K A E ++ QK+KR++
Sbjct: 131 LIVDAPDPKELEEQKK----ALEKEKEAKEQAQKAQKDKREK 168
>ref|NP_224194.1| putative [Helicobacter pylori J99]
Length = 185
Score = 22.3 bits (46), Expect = 7.3
Identities = 10/24 (41%), Positives = 15/24 (61%), Gaps = 2/24 (8%)
Query: 146 KGNFTVTKGKDTLILDNQKMKIYL 169
+GN + KGKD L D K+ ++L
Sbjct: 53 QGNVQIKKGKDRLFAD--KVSVFL 74
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 22.3 bits (46), Expect = 7.3
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 12 HIQKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKRWY 71
+I+K E + + I+T A + EE+Q+S E KE + K++ +
Sbjct: 96 NIKKQESENSM-PIQTDQAQMEMKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPH 154
Query: 72 ELFKKKPKPKSS 83
+ K PK K +
Sbjct: 155 KKPKVAPKDKEA 166
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.3 bits (46), Expect = 7.3
Identities = 13/49 (26%), Positives = 25/49 (50%), Gaps = 4/49 (8%)
Query: 18 MNHQVYDIETMLADSAFREHEEEQDSSLNTALPED----KTAIEAKEQE 62
+NH+ D++T + + H++E+ T E+ T I++K QE
Sbjct: 489 LNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLEEITNIITMIDSKSQE 537
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 7.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 14 QKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQ 61
+K E QV +++ E+E+ ++ NT L DKT + K Q
Sbjct: 136 EKTESQKQVNELKN---SKQVLENEKADLTNENTKLKTDKTDLTEKNQ 180
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 21.9 bits (45), Expect = 9.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 19 NHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRK 68
N QV+ + +AF + ++E +++ P+D +E+KE+ K
Sbjct: 151 NLQVFIEDKNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETK 200
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,234
Number of Sequences: 1491
Number of extensions: 8944
Number of successful extensions: 57
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 35
length of query: 172
length of database: 494,079
effective HSP length: 72
effective length of query: 100
effective length of database: 386,727
effective search space: 38672700
effective search space used: 38672700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)