BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644777|ref|NP_206947.1| hypothetical protein
[Helicobacter pylori 26695]
(68 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222857.1| putative [Helicobacter pylori J99] 129 9e-33
ref|NP_224065.1| putative [Helicobacter pylori J99] 25 0.23
ref|NP_223323.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 22 2.0
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 22 2.6
ref|NP_224096.1| putative [Helicobacter pylori J99] 22 2.6
ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 22 2.6
ref|NP_223127.1| putative [Helicobacter pylori J99] 22 3.3
ref|NP_223126.1| PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Hel... 22 3.3
ref|NP_223061.1| putative Outer membrane protein [Helicobac... 22 3.3
ref|NP_224173.1| putative [Helicobacter pylori J99] 21 5.7
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 21 5.7
ref|NP_223353.1| short-chain fatty acids transporter [Helic... 20 7.4
ref|NP_223252.1| putative [Helicobacter pylori J99] 20 7.4
ref|NP_224041.1| putative [Helicobacter pylori J99] 20 9.7
ref|NP_223645.1| putative [Helicobacter pylori J99] 20 9.7
ref|NP_223023.1| putative [Helicobacter pylori J99] 20 9.7
>ref|NP_222857.1| putative [Helicobacter pylori J99]
Length = 68
Score = 129 bits (325), Expect = 9e-33
Identities = 64/68 (94%), Positives = 64/68 (94%)
Query: 1 MKFLNGLAGNLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANYE 60
MKFLNGLAGNLLIVVILLCV VFF LKAIHIQKEQATNYYRYKDINALE KNTQN ANYE
Sbjct: 1 MKFLNGLAGNLLIVVILLCVVVFFALKAIHIQKEQATNYYRYKDINALEAKNTQNHANYE 60
Query: 61 LVNQGSKK 68
LVNQGSKK
Sbjct: 61 LVNQGSKK 68
>ref|NP_224065.1| putative [Helicobacter pylori J99]
Length = 303
Score = 25.4 bits (54), Expect = 0.23
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 29 IHIQKEQATNYYRYKDINALETKNTQ-NRANYELVNQGSKK 68
IHIQK + N + D + K N E+VNQ ++K
Sbjct: 70 IHIQKSRVDNKLKSSDSQTINLKTDDLELNNVEIVNQEAQK 110
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 22.7 bits (47), Expect = 1.5
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 10 NLLIVVILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANY 59
N L L +A+F + A+ I EQA Y+ K K QN+ Y
Sbjct: 5 NFLYKDSLFSIALFTFIIALVILLEQARAYFTRKRNKKFLQKFAQNQNAY 54
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 22.3 bits (46), Expect = 2.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 3 FLNGLAGNLLIVVILLCVAVFFTLKA 28
FLNG L++ LL F TLKA
Sbjct: 530 FLNGFQSALVVPTTLLAHQHFETLKA 555
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 21.9 bits (45), Expect = 2.6
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 11 LLIVVILLCVAVFFTLKAIHIQKEQ 35
L I +ILL F++L+ +H+ ++
Sbjct: 199 LPIAIILLVGVHFYSLRILHVNNQE 223
>ref|NP_224096.1| putative [Helicobacter pylori J99]
Length = 190
Score = 21.9 bits (45), Expect = 2.6
Identities = 7/19 (36%), Positives = 14/19 (72%)
Query: 31 IQKEQATNYYRYKDINALE 49
++ E + YY YK+++AL+
Sbjct: 131 VELETLSAYYSYKELDALQ 149
>ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 341
Score = 21.9 bits (45), Expect = 2.6
Identities = 11/47 (23%), Positives = 25/47 (52%), Gaps = 7/47 (14%)
Query: 15 VILLCVAVFFTLKAIHIQKEQATNYYRYKDINALETKNTQNRANYEL 61
++LL +A+FF+L + Q+ + T +TK T+++ + +
Sbjct: 4 LLLLALALFFSLSCTNAQEIKETQ-------ETKKTKETKSQTRFNI 43
>ref|NP_223127.1| putative [Helicobacter pylori J99]
Length = 202
Score = 21.6 bits (44), Expect = 3.3
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 11 LLIVVILLCVAVFFTLKA 28
L I VIL+CVA+ F +A
Sbjct: 174 LTIAVILMCVALSFLGRA 191
>ref|NP_223126.1| PHOSPHATIDYLGLYCEROPHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 200
Score = 21.6 bits (44), Expect = 3.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 4 LNGLAGNLLIVVILLCVAVFFTL 26
+ L NL +L+ +AVF TL
Sbjct: 165 IGALLANLTYSYVLVAIAVFLTL 187
>ref|NP_223061.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 21.6 bits (44), Expect = 3.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 40 YRYKDINALETKNTQNRANY 59
YRYKDI A + Q+ A Y
Sbjct: 171 YRYKDIFAAKGGRYQSNAPY 190
>ref|NP_224173.1| putative [Helicobacter pylori J99]
Length = 308
Score = 20.8 bits (42), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 1 MKFLNGLAGNLLIVVILLCVAV 22
+KF L NL+I V++L + V
Sbjct: 19 LKFSKNLKRNLIISVVILLLIV 40
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 20.8 bits (42), Expect = 5.7
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 19 CVAVFFTLKAIHIQKEQATNYYRYKDINA 47
C+ F L H+++ + +Y+RY ++ +
Sbjct: 1141 CLNGRFELLYYHLERSVSISYHRYGNLGS 1169
>ref|NP_223353.1| short-chain fatty acids transporter [Helicobacter pylori J99]
Length = 454
Score = 20.4 bits (41), Expect = 7.4
Identities = 10/26 (38%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Query: 10 NLLIVVILLCVAVFFTLKAIHIQKEQ 35
NL+I+ I+L + + F + IH +KE+
Sbjct: 194 NLIIIGIIL-IGLPFLMAMIHPKKEE 218
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 20.4 bits (41), Expect = 7.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 15 VILLCVAVFFTLKAIH 30
VI+L VAVF L IH
Sbjct: 14 VIILFVAVFTLLVVIH 29
>ref|NP_224041.1| putative [Helicobacter pylori J99]
Length = 692
Score = 20.0 bits (40), Expect = 9.7
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 50 TKNTQNRANYELVNQGSK 67
T N QN N+E ++ SK
Sbjct: 2 TDNNQNNENHENSSENSK 19
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 20.0 bits (40), Expect = 9.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 34 EQATNYYRYKDINALETKNTQNRA 57
++A + +K++NAL TK+ RA
Sbjct: 494 KKAQHPEEFKELNALLTKDEFRRA 517
>ref|NP_223023.1| putative [Helicobacter pylori J99]
Length = 79
Score = 20.0 bits (40), Expect = 9.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 27 KAIHIQKEQATNYYRYKDINALETK 51
KA+ +E+A N + D A +TK
Sbjct: 42 KAVKDDEEEAKNELKTLDAQATQTK 66
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.136 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,624
Number of Sequences: 1491
Number of extensions: 2356
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of query: 68
length of database: 494,079
effective HSP length: 44
effective length of query: 24
effective length of database: 428,475
effective search space: 10283400
effective search space used: 10283400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)