BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644778|ref|NP_206948.1| hypothetical protein
[Helicobacter pylori 26695]
(194 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222858.1| putative [Helicobacter pylori J99] 339 3e-95
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 28 0.21
ref|NP_224092.1| putative [Helicobacter pylori J99] 26 0.80
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 25 1.8
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 24 2.3
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 24 2.3
ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 24 3.0
ref|NP_222932.1| putative [Helicobacter pylori J99] 24 3.0
ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99] 23 4.0
ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylo... 23 4.0
ref|NP_222735.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223704.1| putative [Helicobacter pylori J99] 23 5.2
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 23 5.2
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 23 5.2
ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE ... 23 6.8
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 23 6.8
ref|NP_223630.1| septum formation protein [Helicobacter pyl... 23 6.8
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 6.8
ref|NP_223928.1| NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER [H... 22 8.9
ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori... 22 8.9
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 22 8.9
ref|NP_223416.1| putative [Helicobacter pylori J99] 22 8.9
ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobact... 22 8.9
>ref|NP_222858.1| putative [Helicobacter pylori J99]
Length = 197
Score = 339 bits (869), Expect = 3e-95
Identities = 176/197 (89%), Positives = 184/197 (93%), Gaps = 3/197 (1%)
Query: 1 MRILWLVIA--FVCCLGADD-YVFNNFKGRLVEKSVAFVEGVSKELYLKTGVRFVIDMTD 57
M+ LWLVI+ FV L A++ YVFNN KGRL EKSVAF+EGVSKELYLKTGVRF IDMTD
Sbjct: 1 MKGLWLVISLVFVGFLWANESYVFNNSKGRLTEKSVAFIEGVSKELYLKTGVRFAIDMTD 60
Query: 58 FEKNPIALATKKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEK 117
FEKNPIALA KKERQ+YQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEK
Sbjct: 61 FEKNPIALANKKERQSYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEK 120
Query: 118 IAPLLPTNPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGVTFVKVVIYIL 177
IAPLLPTN KEYTPQRISAMLINGYSVAVDALA+KY VNITQNF+APKGVTFVKVVIYIL
Sbjct: 121 IAPLLPTNAKEYTPQRISAMLINGYSVAVDALAEKYHVNITQNFSAPKGVTFVKVVIYIL 180
Query: 178 LLTLLGAFLGLYFFKKS 194
LLTLLGAFLGLYFFKKS
Sbjct: 181 LLTLLGAFLGLYFFKKS 197
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 27.7 bits (60), Expect = 0.21
Identities = 11/17 (64%), Positives = 12/17 (69%)
Query: 153 YRVNITQNFNAPKGVTF 169
YR NI+ NFN KG TF
Sbjct: 2611 YRANISGNFNVAKGATF 2627
>ref|NP_224092.1| putative [Helicobacter pylori J99]
Length = 265
Score = 25.8 bits (55), Expect = 0.80
Identities = 12/45 (26%), Positives = 24/45 (52%)
Query: 90 FFYHDAQKIELVANPKDLLDTDKIFFEKIAPLLPTNPKEYTPQRI 134
F ++++L+ + LL+ ++KIA + N + YT QR+
Sbjct: 61 FLSQKCEELDLIVSAPVLLEEHSKIYKKIALISKENIQYYTQQRL 105
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 24.6 bits (52), Expect = 1.8
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 111 DKIFFEKIAPLLPTN-PKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGV-- 167
+K+F I L+P E+ +L+ + L+ + + +N PKGV
Sbjct: 210 EKMFMTLIFVLIPLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVML 269
Query: 168 --TFVKVVIYILLLTLLGAFLGLYFF 191
+ +V Y+ L +FLG Y +
Sbjct: 270 SGVLLFIVSYLCLFLADSSFLGKYLW 295
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 24.3 bits (51), Expect = 2.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 30 EKSVAFVEGVSKELYLKTGVRFVI 53
EKS AF E + KE+ + +G+ F++
Sbjct: 568 EKSDAFREIIRKEVSVPSGIAFIV 591
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 24.3 bits (51), Expect = 2.3
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 29 VEKSVAFVEGVSKELYLKTGVRFVIDMTDFEKNPIALATKKERQN----YQEGFLKQLKP 84
++K VA E+ LK D D NPI K+E+Q+ ++ F+ + P
Sbjct: 1521 IDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETSPVKQAFIGKSDP 1580
Query: 85 PFVV 88
FV+
Sbjct: 1581 TFVL 1584
>ref|NP_223747.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 350
Score = 23.9 bits (50), Expect = 3.0
Identities = 28/104 (26%), Positives = 43/104 (40%), Gaps = 16/104 (15%)
Query: 67 TKKERQNYQEGFLKQLKPPFVV--FFFYHDAQ------KIELVANPKDLLDTDKIF-FEK 117
T K + +QE F K F ++HD + +V + ++ DK EK
Sbjct: 97 TCKPCKEHQEQFCANHKTVFTYDCLDYFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEK 156
Query: 118 IAPLLPTNPKEYTPQRISAMLINGYSVAV------DALAQKYRV 155
+APLL Y+P + S + G V V ++A KY V
Sbjct: 157 VAPLLCAGITTYSPLKFS-KVTKGTKVGVAGFGGLGSMAVKYAV 199
>ref|NP_222932.1| putative [Helicobacter pylori J99]
Length = 277
Score = 23.9 bits (50), Expect = 3.0
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 131 PQRISAMLINGYSVAVDALAQKYRVNITQNFNAPKGVTFVKVVIYILLLTLLGAFLGLYF 190
P I A ++V + + + + N KG+ +K + L L+GA LG +
Sbjct: 33 PSAIFAHFSYSHAVGISLMQMLFSSVVGSIINYKKGLLDLKEGSFAALGGLMGAILGSFI 92
Query: 191 FK 192
K
Sbjct: 93 LK 94
>ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 23.5 bits (49), Expect = 4.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 43 LYLKTGVRFVIDMTDFEKNPIALATKKERQNYQEGFLKQLKPPFVVF 89
L L + ++ +D+ DF K L + R YQE + PF +F
Sbjct: 268 LNLPSYIKTTMDLIDFSKCANTLIKRPPRAKYQE-----IPSPFPLF 309
>ref|NP_223982.1| PHOSPHOGLYCERATE KINASE [Helicobacter pylori J99]
Length = 402
Score = 23.5 bits (49), Expect = 4.0
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 68 KKERQNYQEGFLKQLKPPFVVFFFYHDAQKIELVANPKDLLD 109
KKE ++ + F L+P ++ + K+ L+ N DL+D
Sbjct: 180 KKEIDSFYQAFNHPLRPLLLIVGGAKVSSKLTLLKNILDLID 221
>ref|NP_222735.1| putative [Helicobacter pylori J99]
Length = 93
Score = 23.5 bits (49), Expect = 4.0
Identities = 11/37 (29%), Positives = 19/37 (50%), Gaps = 9/37 (24%)
Query: 167 VTFVKVVIYI---------LLLTLLGAFLGLYFFKKS 194
V F+ + IY+ +L T+LG G++ F K+
Sbjct: 46 VIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKA 82
>ref|NP_223704.1| putative [Helicobacter pylori J99]
Length = 252
Score = 23.1 bits (48), Expect = 5.2
Identities = 16/45 (35%), Positives = 20/45 (43%), Gaps = 8/45 (17%)
Query: 45 LKTGVRFVIDMTDFEKNPIALATKKERQNYQEGFLKQLKPPFVVF 89
LK+G F+ D K+P + T KE L KPP V F
Sbjct: 7 LKSGAVFISDAHFLPKSPHLIHTLKE--------LLSAKPPQVFF 43
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 23.1 bits (48), Expect = 5.2
Identities = 20/73 (27%), Positives = 30/73 (40%), Gaps = 15/73 (20%)
Query: 12 CCLGADDYVFNNFKGRLVEKSVAFVEGVSKELYLKTGVRFVIDMTDFEKNPIALATKKER 71
C L + ++FK R ++ AF+ VS + + P A KE
Sbjct: 367 CDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRIL-------------EAPNLNARLKEM 413
Query: 72 QNYQEGFLKQLKP 84
+NY GFLK + P
Sbjct: 414 ENY--GFLKAILP 424
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 23.1 bits (48), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (71%)
Query: 3 ILWLVIAFVCCLGADDYV 20
+++ V + V CL ADD+V
Sbjct: 250 VMFFVFSCVMCLNADDFV 267
>ref|NP_224105.1| UDP-N-ACETYLMURAMYL-TRIPEPTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 447
Score = 22.7 bits (47), Expect = 6.8
Identities = 10/24 (41%), Positives = 15/24 (61%)
Query: 99 ELVANPKDLLDTDKIFFEKIAPLL 122
E++ NPK++L EK APL+
Sbjct: 23 EVLENPKEILFVKTPLNEKYAPLI 46
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 22.7 bits (47), Expect = 6.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 114 FFEKIAPLLPT-NPKEYTPQRISAMLINGYSVAVDALAQKYRVNITQNFN 162
F + + PL T Q++ A+ SVA++AL N T N N
Sbjct: 315 FIQNLTPLAATPTSTNQANQQVQAIAQKLQSVAINALDNNAINNTTYNLN 364
>ref|NP_223630.1| septum formation protein [Helicobacter pylori J99]
Length = 493
Score = 22.7 bits (47), Expect = 6.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 56 TDFEKNPIALATKKERQNYQEGFLKQLKPP 85
T F P+ LAT E+ N G + LK P
Sbjct: 367 THFTNYPVRLATPVEKYNIM-GMFEDLKDP 395
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 22.7 bits (47), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Query: 60 KNPIALATK-KERQNYQEGFLKQLKPPFV 87
KN + + K E Q + EGF ++K PF+
Sbjct: 74 KNSVCMYKKGNEAQPFLEGFEMKIKKPFL 102
>ref|NP_223928.1| NICOTINAMIDE MONONUCLEOTIDE TRANSPORTER [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 8.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 177 LLLTLLGAFLGLYFFKK 193
L T+L F+GLY+F +
Sbjct: 197 LFTTILYLFIGLYYFNR 213
>ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 22.3 bits (46), Expect = 8.9
Identities = 14/61 (22%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
Query: 107 LLDTDKIFFEKIAPLLPTNPKEYTPQRISAMLINGYSVAVDALAQK-YRVNITQNFNAPK 165
LLD ++I+ ++ + PK +S +++ G +A D ++ Y + +F+ P
Sbjct: 205 LLDKNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKELDFDVPV 264
Query: 166 G 166
G
Sbjct: 265 G 265
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 22.3 bits (46), Expect = 8.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 49 VRFVIDMTDFEKNPIALATKKERQNYQE 76
+R +ID T +N + LATK + Y++
Sbjct: 32 LRTLIDFTPKIENALNLATKSHKGQYRK 59
>ref|NP_223416.1| putative [Helicobacter pylori J99]
Length = 200
Score = 22.3 bits (46), Expect = 8.9
Identities = 16/70 (22%), Positives = 28/70 (39%), Gaps = 3/70 (4%)
Query: 78 FLKQLKPPFVVFFFYHDAQKIELVANPKDLLDTDKIFFEKIAPLLPTNPKEYTPQRISAM 137
F KQLK P V+F A ++ D D + + ++ N +++ QR++
Sbjct: 119 FKKQLKRPLVIFVSRELALANGILT---DAYDIEANLYMNARIVMKNNKRKHYEQRVNLH 175
Query: 138 LINGYSVAVD 147
I D
Sbjct: 176 FIRSLGSVFD 185
>ref|NP_223314.1| ALPHA (1,3)-FUCOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 454
Score = 22.3 bits (46), Expect = 8.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 149 LAQKYRVNITQNFNAPKGVTF 169
L+Q+Y + + QN N P + F
Sbjct: 51 LSQRYTITLHQNPNEPSDLVF 71
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.327 0.144 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,637
Number of Sequences: 1491
Number of extensions: 10191
Number of successful extensions: 53
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 23
length of query: 194
length of database: 494,079
effective HSP length: 73
effective length of query: 121
effective length of database: 385,236
effective search space: 46613556
effective search space used: 46613556
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)