BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646082|ref|NP_208264.1| hypothetical protein
[Helicobacter pylori 26695]
(191 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224084.1| putative [Helicobacter pylori J99] 372 e-105
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 31 0.024
ref|NP_223237.1| ADENINE PHOSPHORIBOSYLTRANSFERASE [Helicob... 29 0.092
ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99] 27 0.35
ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicob... 27 0.46
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 27 0.46
ref|NP_223207.1| cag island protein [Helicobacter pylori J99] 25 1.0
ref|NP_223715.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 24 3.0
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 24 3.0
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 23 5.1
ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Heli... 23 5.1
ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99] 23 5.1
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 6.6
ref|NP_223608.1| putative [Helicobacter pylori J99] 22 8.6
>ref|NP_224084.1| putative [Helicobacter pylori J99]
Length = 191
Score = 372 bits (955), Expect = e-105
Identities = 186/191 (97%), Positives = 188/191 (98%)
Query: 1 MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI 60
MRCLTCLKLSFKPLCPNCLNDLPLSLK+RVLEGVSVYSFYAYSEIEELIKSKYALIGSRI
Sbjct: 1 MRCLTCLKLSFKPLCPNCLNDLPLSLKLRVLEGVSVYSFYAYSEIEELIKSKYALIGSRI 60
Query: 61 LPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRL 120
LPLLSQKAGAEFVKILQEQGLN PLYGIAIDDKIKSFYSHSAALLKGFCQGNLK TYGRL
Sbjct: 61 LPLLSQKAGAEFVKILQEQGLNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRL 120
Query: 121 RANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKV 180
RANNAVSYAGKSLEFRANNPRNFTF+GDESLDYFLLDDIITTGTTLKEALKYLKTLNIK
Sbjct: 121 RANNAVSYAGKSLEFRANNPRNFTFRGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKA 180
Query: 181 HFAIALCSADE 191
HFAIALCSADE
Sbjct: 181 HFAIALCSADE 191
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 30.8 bits (68), Expect = 0.024
Identities = 34/127 (26%), Positives = 55/127 (42%), Gaps = 4/127 (3%)
Query: 42 YSEIEELIKSKYALIG-SRILPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSH 100
+ E + + KS+Y + G S LPL Q+ +K L+ + Y I D + +H
Sbjct: 293 FLEPQTIHKSEYYINGLSTSLPLDVQEKVIHSIKGLENALITRYGYAIEYDFIQPTELTH 352
Query: 101 SAAL--LKG-FCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLD 157
+ +KG + G + T G A AG + N F K +E+ L+D
Sbjct: 353 ALETKKIKGLYLAGQINGTTGYEEAAAQGLMAGINAVLALKNQAPFILKRNEAYIGVLID 412
Query: 158 DIITTGT 164
D++T GT
Sbjct: 413 DLVTKGT 419
>ref|NP_223237.1| ADENINE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 179
Score = 28.9 bits (63), Expect = 0.092
Identities = 19/70 (27%), Positives = 35/70 (49%), Gaps = 8/70 (11%)
Query: 120 LRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKEALKYLKTLN-- 177
L + ++ Y S+E ++ F+G + + L+DD++ TG T +L+ +K L
Sbjct: 94 LSQSYSLEYGSDSIEIHSD-----AFRGIKGVRVVLVDDLLATGGTALASLELIKALQAE 148
Query: 178 -IKVHFAIAL 186
I+ F I L
Sbjct: 149 CIEACFLIGL 158
>ref|NP_223286.1| AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 375
Score = 26.9 bits (58), Expect = 0.35
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 20 NDLPLSLKVRVLEGVSVYSFYAYSEI---EELIKSKYALIGSRILPLL---SQKAGAEFV 73
N+L L+ K+ + YSFYAY + E K+ Y G LP L GA++V
Sbjct: 290 NNLKLARKIFKETLIYPYSFYAYLPVKDGENFAKTLYQNEGITTLPALYLGRNHIGADYV 349
Query: 74 KI 75
++
Sbjct: 350 RL 351
>ref|NP_223896.1| OROTATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 201
Score = 26.6 bits (57), Expect = 0.46
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 23/126 (18%)
Query: 51 SKYALIGSRIL--PLLSQKAGAEFVKILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGF 108
S Y L +++L P L+++ E K +QE LNI I + Y + AL F
Sbjct: 26 SNYYLQSAKVLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRF 85
Query: 109 CQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDIITTGTTLKE 168
R +N ++ R F K +E + + +DIITTG + E
Sbjct: 86 IFTE--------RVDNTMTLR-----------RGFEVKKNEKI--LVCEDIITTGKSAME 124
Query: 169 ALKYLK 174
K L+
Sbjct: 125 CAKVLE 130
Score = 22.7 bits (47), Expect = 6.6
Identities = 16/52 (30%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 67 KAGAEFVKILQEQGLNIPLYGIAIDDKI-KSFYSHSAALLKGFCQGNLKPTY 117
K+ E K+L+E+G I +G + I K +SH A +G C + P +
Sbjct: 120 KSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLKA-QEGACLPSHLPLF 170
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 26.6 bits (57), Expect = 0.46
Identities = 23/70 (32%), Positives = 31/70 (43%), Gaps = 12/70 (17%)
Query: 12 KPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAE 71
K LCP+CL + L LE S F+ S E+ + YA ILP+ +
Sbjct: 144 KVLCPDCLRETTL------LEEESY--FFKLSAYEKPLLEFYAKNPEAILPIYRKNEVTS 195
Query: 72 FVKILQEQGL 81
F+ EQGL
Sbjct: 196 FI----EQGL 201
>ref|NP_223207.1| cag island protein [Helicobacter pylori J99]
Length = 370
Score = 25.4 bits (54), Expect = 1.0
Identities = 20/82 (24%), Positives = 33/82 (39%), Gaps = 5/82 (6%)
Query: 33 GVSVYSFYAYSE-IEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQGLNIPLYGIAID 91
G V + Y Y+E + E+++ Y LL + IL + GL Y
Sbjct: 264 GDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQM----ILNQSGLATSTYDTQAI 319
Query: 92 DKIKSFYSHSAALLKGFCQGNL 113
I S Y+++ K F + +L
Sbjct: 320 SNISSLYNYNIVANKSFLKSHL 341
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 24.6 bits (52), Expect = 1.7
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 25 SLKVRVLEGV--SVYSFYAYSEIEE--LIKSKYALIG-SRILPLLSQKAGAEFVKILQEQ 79
+L +L GV +++ FYA + + E I+ +Y ++ L L+ + E +KIL+E+
Sbjct: 14 TLSTLLLVGVLLALFFFYAKNNLLENTQIRMQYTADAIAKSLLELNNASSLEPLKILEER 73
Query: 80 GLNIPLYGIAIDDKIK 95
N P + D+++K
Sbjct: 74 FKNTPFVLLDADNRVK 89
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 23.9 bits (50), Expect = 3.0
Identities = 10/15 (66%), Positives = 11/15 (72%)
Query: 90 IDDKIKSFYSHSAAL 104
IDDKIK FY + AL
Sbjct: 1013 IDDKIKRFYQNQKAL 1027
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 23.9 bits (50), Expect = 3.0
Identities = 24/93 (25%), Positives = 41/93 (43%), Gaps = 6/93 (6%)
Query: 38 SFYAYS----EIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQGLNIPLYGIAIDDK 93
+FYAY E + + ++ + RI+ LL + A K +Q+ L + L D
Sbjct: 406 NFYAYELSGGERQRVAIARAIALKPRII-LLDEPTSA-LDKSIQKSVLELLLNLQEKQDL 463
Query: 94 IKSFYSHSAALLKGFCQGNLKPTYGRLRANNAV 126
F SH ++K FC L + G++ A+
Sbjct: 464 SYLFISHDLDVIKAFCDRVLVVSEGKIVETGAI 496
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 23.1 bits (48), Expect = 5.1
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Query: 19 LNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAG----AEFVK 74
L +L SL + VL VS EIE L+K +Y +IG L + K E
Sbjct: 146 LFNLAKSLNMSVLTEVS-----NQQEIERLLKLQYDIIGINNRDLHTLKTDIFHTLELRP 200
Query: 75 ILQEQGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGN 112
+L + + I GI +IK+ A + GF G+
Sbjct: 201 LLPKDAIIISESGIYSHAQIKAL----APCVNGFLVGS 234
>ref|NP_223487.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT A [Helicobacter pylori J99]
Length = 453
Score = 23.1 bits (48), Expect = 5.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 109 CQGNLKPTYGRLRANNAVSY 128
C G LKPTYGR+ ++Y
Sbjct: 162 CVG-LKPTYGRVSRYGVIAY 180
>ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99]
Length = 559
Score = 23.1 bits (48), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 154 FLLDDIITTGTTLKEALKYLKTLNI 178
+LLDD + LKE L +LK ++
Sbjct: 364 YLLDDPLEKDKALKEMLGFLKNFSL 388
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 22.7 bits (47), Expect = 6.6
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 18 CLNDLPLSLKVRVL--EGVSVY 37
CL DLP L+ +VL E V VY
Sbjct: 703 CLKDLPKDLQKKVLAKESVRVY 724
>ref|NP_223608.1| putative [Helicobacter pylori J99]
Length = 242
Score = 22.3 bits (46), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (49%)
Query: 146 KGDESLDYFLLDDIITTGTTLKEALKYLKTLNIKVH 181
KG E++ II T LK +K +T I+VH
Sbjct: 159 KGQEAVTIITPLKIINKKTLLKVGIKTGRTHQIRVH 194
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,701
Number of Sequences: 1491
Number of extensions: 9197
Number of successful extensions: 50
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 17
length of query: 191
length of database: 494,079
effective HSP length: 73
effective length of query: 118
effective length of database: 385,236
effective search space: 45457848
effective search space used: 45457848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)