BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646084|ref|NP_208266.1| lipopolysaccharide core
biosynthesis protein (kdtB) [Helicobacter pylori 26695]
(157 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTE... 305 3e-85
ref|NP_223974.1| putative [Helicobacter pylori J99] 36 4e-04
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synt... 25 1.3
ref|NP_224114.1| putative component of cation transport for... 24 1.7
ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicob... 24 2.2
ref|NP_223218.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter py... 23 4.9
ref|NP_223572.1| putative [Helicobacter pylori J99] 23 4.9
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 23 4.9
ref|NP_223389.1| putative [Helicobacter pylori J99] 22 8.3
ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter py... 22 8.3
>ref|NP_224086.1| LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 157
Score = 305 bits (782), Expect = 3e-85
Identities = 153/156 (98%), Positives = 155/156 (99%)
Query: 1 MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMIQLATK 60
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKM+QLATK
Sbjct: 1 MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATK 60
Query: 61 SFKNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMP 120
SFKNVECVAFEGLLA+LAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMP
Sbjct: 61 SFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMP 120
Query: 121 TLQNAFISSSIVRSIIAHKGDASHLVPKEIYPLISK 156
TLQNAFISSSIVRSIIAHKGDASHLVPKEIYP ISK
Sbjct: 121 TLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISK 156
>ref|NP_223974.1| putative [Helicobacter pylori J99]
Length = 174
Score = 36.2 bits (82), Expect = 4e-04
Identities = 25/74 (33%), Positives = 39/74 (51%), Gaps = 4/74 (5%)
Query: 2 QKIGIYPGTFDPVTNGHIDIIHRSSEL--FEKLIVAVAHSSA-KNPMF-SLDERLKMIQL 57
+++ +Y G+FDP+ H+ II ++ EL F +LIV A+ + K P F R K ++
Sbjct: 11 KELALYGGSFDPLHKAHLAIIEQTLELLPFVQLIVLPAYQNPFKKPCFLDAKTRFKELER 70
Query: 58 ATKSFKNVECVAFE 71
A K V FE
Sbjct: 71 ALKGMPRVLLSDFE 84
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 24.6 bits (52), Expect = 1.3
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 75 ANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSS 130
A A +YH K + ++SDF L++ N + TL + L N +S
Sbjct: 12 AGAALKYHIKRALERSHLISDFSKNLELSAKNSKFTN--NTLKIIEELNNGVKQAS 65
>ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 24.6 bits (52), Expect = 1.3
Identities = 24/95 (25%), Positives = 41/95 (42%), Gaps = 9/95 (9%)
Query: 2 QKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSA-------KNPMFSLDERLKM 54
QKI G FD + GH + ++ L + L+V + ++ K P+ S E+ +
Sbjct: 330 QKIVFTNGCFDILHKGHASYLQKAKALGDILVVGLNSDNSIKRLKGDKRPIVS--EKDRA 387
Query: 55 IQLATKSFKNVECVAFEGLLANLAKEYHCKVLVRG 89
LA+ S + V E L + +LV+G
Sbjct: 388 FLLASLSCVDYVVVFGEDTPIKLIQALKPDILVKG 422
>ref|NP_224114.1| putative component of cation transport for cbb3-type oxidase
[Helicobacter pylori J99]
Length = 788
Score = 24.3 bits (51), Expect = 1.7
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 28 LFEKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFEGLLANLAKEYHCKVLV 87
L+ L+ + A + + +L K ++L + F N +C+A E + E H ++V
Sbjct: 262 LYAMLVSQETYFEASSTILTLVFGSKFLELKARLFANEKCLALE------SHEIHSVIVV 315
Query: 88 RGLRVVSDFEYELQMG 103
+ + ++ +G
Sbjct: 316 ENGKQIEKHPKDVAIG 331
>ref|NP_223624.1| GLYCYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 701
Score = 23.9 bits (50), Expect = 2.2
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 9/54 (16%)
Query: 92 VVSDFEYELQ--MGY--ANKSLNHELETL----YFMPTLQNAFISSSIVRSIIA 137
VV +F ELQ MGY A K +EL L ++P +NA + SS+ SI+A
Sbjct: 418 VVYEFS-ELQGIMGYYYALKQNENELVALSVKEQYLPASENAPLPSSVFSSIVA 470
>ref|NP_223218.1| putative [Helicobacter pylori J99]
Length = 227
Score = 23.5 bits (49), Expect = 2.8
Identities = 14/59 (23%), Positives = 32/59 (53%), Gaps = 3/59 (5%)
Query: 62 FKNVECVAFEGLLANLAKEYHCKVLVR-GLRVVSDFEYELQMGYANKSLNHELETLYFM 119
F++ C+ +G++ + A+E+ + +VR L ++ D + + L +EL+T F+
Sbjct: 103 FRSAYCLGMDGVILDFAREFAYEGIVRSSLGLMYDLPFSVMPN--TLDLINELKTSGFL 159
>ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter pylori J99]
Length = 164
Score = 22.7 bits (47), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 18 HIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMI 55
H D + LF+K V+VAH A + + S +E + M+
Sbjct: 102 HKDHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGML 139
>ref|NP_223572.1| putative [Helicobacter pylori J99]
Length = 230
Score = 22.7 bits (47), Expect = 4.9
Identities = 12/37 (32%), Positives = 19/37 (50%)
Query: 104 YANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKG 140
YA S+ HE E + F+ T F S ++ ++ A G
Sbjct: 13 YAEDSVLHESELVSFVKTTYKFFAGSLLLATVGALLG 49
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 22.7 bits (47), Expect = 4.9
Identities = 17/54 (31%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 32 LIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVECVAFEGLLANLAKEYHCKV 85
L+ +A S P S + +LK +L NVECV + LLA++ K+
Sbjct: 292 LLFNLAAISDYLPKTSFNHKLKKSELGETL--NVECVQNKDLLASVNPNQFVKI 343
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 21.9 bits (45), Expect = 8.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 106 NKSLNHELETLYFMPTLQNAFISSSIV 132
N S H L+ L M ++ +FI S+I+
Sbjct: 272 NSSQAHHLKLLNAMKQVKESFIRSTII 298
>ref|NP_223315.1| PHOSPHOSERINE PHOSPHATASE [Helicobacter pylori J99]
Length = 207
Score = 21.9 bits (45), Expect = 8.3
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 3 KIGIYPGTFDPVTNGHIDIIHRSSELFEKLIV 34
K+ + G FD TN + D+++ + LIV
Sbjct: 91 KVVCFSGGFDLATNHYRDLLNLDAAFSNTLIV 122
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,161
Number of Sequences: 1491
Number of extensions: 6405
Number of successful extensions: 19
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 12
length of query: 157
length of database: 494,079
effective HSP length: 71
effective length of query: 86
effective length of database: 388,218
effective search space: 33386748
effective search space used: 33386748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)