BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646085|ref|NP_208267.1| phenylacrylic acid
decarboxylase [Helicobacter pylori 26695]
(187 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224087.1| OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE... 363 e-102
ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Heli... 29 0.089
ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99] 25 0.99
ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99] 25 1.3
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 25 1.7
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 25 1.7
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 25 1.7
ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter... 24 2.2
ref|NP_223578.1| putative [Helicobacter pylori J99] 24 2.9
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 23 6.4
>ref|NP_224087.1| OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE [Helicobacter pylori
J99]
Length = 187
Score = 363 bits (933), Expect = e-102
Identities = 184/187 (98%), Positives = 186/187 (99%)
Query: 1 MKLVLGISGASGIPLALRFLEKLPKEIEVFVVASKNAHVVALEESNINLKNAMKDLRPSG 60
MKLVLGISGASGIPLALRFLEKLPKEIE+FVVASKNAHVVALEESNINLKNAMKDLRPS
Sbjct: 1 MKLVLGISGASGIPLALRFLEKLPKEIEIFVVASKNAHVVALEESNINLKNAMKDLRPSA 60
Query: 61 TFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLI 120
TFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLI
Sbjct: 61 TFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLI 120
Query: 121 APREMPLSAIMLENLLKLSHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDL 180
APREMPLSAIMLENLLKL+HSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDL
Sbjct: 121 APREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDL 180
Query: 181 YPRWGMN 187
YPRWGMN
Sbjct: 181 YPRWGMN 187
>ref|NP_223497.1| PANTOTHENATE METABOLISM FLAVOPROTEIN [Helicobacter pylori J99]
Length = 425
Score = 28.9 bits (63), Expect = 0.089
Identities = 21/57 (36%), Positives = 30/57 (51%), Gaps = 1/57 (1%)
Query: 1 MKLVLGISGASGIPLALRFLEKLPKEIEVFVVASKNAHVVALEESNINL-KNAMKDL 56
+ L L GA +A F LPKEI +V+ ++ AL E+ NL K+A+K L
Sbjct: 236 LALALYFKGAKVTLIASNFPTPLPKEIASVLVSDTASYENALNEAAKNLQKHALKPL 292
>ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
Length = 455
Score = 25.4 bits (54), Expect = 0.99
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 19 FLEKL---PKEIEVFVVASKNAHVVALEESNINLKNAMKDL 56
+LEK PK IEV ++A K+ +V+ + E + +++ + L
Sbjct: 209 YLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKL 249
>ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99]
Length = 255
Score = 25.0 bits (53), Expect = 1.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 24 PKEIEVFVVASKNAHVVALEE 44
P EIE+ +VA A +ALEE
Sbjct: 60 PHEIELLIVACNTASALALEE 80
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 24.6 bits (52), Expect = 1.7
Identities = 12/42 (28%), Positives = 22/42 (51%)
Query: 76 SYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRP 117
SYGI K A+ + + ++++G G D++ + EK P
Sbjct: 605 SYGIIKYNYAQANNEKIQQLSYGVGMDVLFDFITNYTNEKNP 646
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 50 KNAMKDLRPSGTFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHG 98
K K+L+ + T D+ A I + P SMD+ + HG
Sbjct: 698 KEENKELKNAKTLLKNNDVIAGINKLKESVKNSQKAPVSMDLPVEKIHG 746
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 24.6 bits (52), Expect = 1.7
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 41 ALEESNINLKNAMKDLRPSGTFFNEQDIHASIASGSYGIHKMAIIPASMDMV--AKIAHG 98
A++E LK A+K L P F +E H + H + ++P ++ K+ H
Sbjct: 665 AIDELGSVLKEALKLLHPFMPFISESLYHKLSNTELENAHSIMVMPYPKEIAQDEKLEHE 724
Query: 99 FGGDLISRSASVMLKEKRPLLIAP 122
F + + V L+ + +L P
Sbjct: 725 FE---VIKDCIVSLRRLKIMLETP 745
>ref|NP_223743.1| PHOSPHOGLUCONATE DEHYDRATASE [Helicobacter pylori J99]
Length = 608
Score = 24.3 bits (51), Expect = 2.2
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 65 EQDIHASIASGSYGIHKMAIIPASMDMVAKIAHG-----FGGDLISRSASVMLKEK---R 116
E + +AS+ASG +PA D + + G F D+I+ S +V L
Sbjct: 97 EHNAYASVASG---------VPAMCDGITQGYEGMELSLFSRDVIALSTAVGLSHNVFDG 147
Query: 117 PLLIAPREMPLSAIMLENLLKLSHSNAIIAP--PMMTYYTQSKTLEAMQDFLVGK 169
+ + + +++ L + ++ P PM++ K +A QDF +GK
Sbjct: 148 AFFLGVCDKIVPGLLI-GALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGK 201
>ref|NP_223578.1| putative [Helicobacter pylori J99]
Length = 381
Score = 23.9 bits (50), Expect = 2.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 140 HSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIEND 179
HSNA+ A + + + M+ + GK+FD+L +E +
Sbjct: 242 HSNALKALKNQAHPFKILEGDVMRHYPYGKFFDALELEKE 281
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 22.7 bits (47), Expect = 6.4
Identities = 27/102 (26%), Positives = 46/102 (44%), Gaps = 10/102 (9%)
Query: 83 AIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLSHSN 142
A+I +SM + + HG + S S S L E + I ++ + LEN K SH
Sbjct: 95 ALIASSMGL-SMAKHG-SRSVSSHSGSADLLENLGVNIE-----MNPMQLENCFKQSHFG 147
Query: 143 AIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLG-IENDLYPR 183
+ AP + + + K+ ++ F+ LG + N L P+
Sbjct: 148 FLFAP--LYHQSFKKSAPLRKELFTKTIFNCLGPLINPLRPK 187
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,265
Number of Sequences: 1491
Number of extensions: 7662
Number of successful extensions: 28
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 11
length of query: 187
length of database: 494,079
effective HSP length: 73
effective length of query: 114
effective length of database: 385,236
effective search space: 43916904
effective search space used: 43916904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)