BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646091|ref|NP_208273.1| hypothetical protein
[Helicobacter pylori 26695]
(86 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224093.1| putative [Helicobacter pylori J99] 157 4e-41
ref|NP_222748.1| putative [Helicobacter pylori J99] 25 0.22
ref|NP_223891.1| putative [Helicobacter pylori J99] 25 0.37
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 24 0.63
ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99] 23 1.4
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 22 1.8
ref|NP_223234.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 22 3.1
ref|NP_223630.1| septum formation protein [Helicobacter pyl... 22 3.1
ref|NP_223281.1| putative lipopolysaccharide biosynthesis p... 22 3.1
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 22 3.1
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 21 4.1
ref|NP_222998.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_222976.1| putative [Helicobacter pylori J99] 21 4.1
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 21 4.1
ref|NP_223618.1| putative [Helicobacter pylori J99] 21 5.3
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 20 7.0
ref|NP_223625.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 20 7.0
ref|NP_222887.1| sialic acid synthase [Helicobacter pylori ... 20 7.0
ref|NP_223820.1| putative Outer membrane function [Helicoba... 20 9.1
ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pyl... 20 9.1
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 20 9.1
ref|NP_222895.1| putative [Helicobacter pylori J99] 20 9.1
>ref|NP_224093.1| putative [Helicobacter pylori J99]
Length = 86
Score = 157 bits (397), Expect = 4e-41
Identities = 77/86 (89%), Positives = 80/86 (92%)
Query: 1 MQDELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQ 60
MQDELFETEK P KN KN KNAPKKSFEEHVHSLER IDRLNDPNLSLKDGMDLYKTAMQ
Sbjct: 1 MQDELFETEKAPQKNAKNAKNAPKKSFEEHVHSLERVIDRLNDPNLSLKDGMDLYKTAMQ 60
Query: 61 ELFLAQKLLENAYLEHEKLQTPDQKA 86
ELFLAQKLLENAY E+EKLQTP++KA
Sbjct: 61 ELFLAQKLLENAYSEYEKLQTPNKKA 86
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 25.4 bits (54), Expect = 0.22
Identities = 20/78 (25%), Positives = 36/78 (45%), Gaps = 3/78 (3%)
Query: 4 ELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQELF 63
EL + E P +NT T K ++ + + R+ D NLSL + +D Y + L
Sbjct: 9 ELVDDE--PQRNTSLTSAIDKALADKKLARQNKPRVRVKD-NLSLSETLDAYGRELSRLK 65
Query: 64 LAQKLLENAYLEHEKLQT 81
Q+ ++ + +E L +
Sbjct: 66 NQQETIKASTIESSNLNS 83
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 24.6 bits (52), Expect = 0.37
Identities = 18/82 (21%), Positives = 36/82 (42%), Gaps = 7/82 (8%)
Query: 3 DELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQEL 62
+ ++ + +P K +KS +E V + R + P++ L + L
Sbjct: 351 NSIYASPPLPSPEEKALLAPYEKSLDERVFKEPYIVPRTDGPDV-------LGYNLRENL 403
Query: 63 FLAQKLLENAYLEHEKLQTPDQ 84
AQKLLE+A ++ ++ D+
Sbjct: 404 KYAQKLLESAGFSYKNMRLVDK 425
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 23.9 bits (50), Expect = 0.63
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 24 KKSFEEHVHSLERAI 38
+K ++EH H L+RAI
Sbjct: 988 QKGYDEHTHELKRAI 1002
>ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99]
Length = 239
Score = 22.7 bits (47), Expect = 1.4
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 12/52 (23%)
Query: 34 LERAIDRLNDPNLSLKDGMDLYKTAMQELFLAQ-------KLLENAYLEHEK 78
L RA RL+ +L + YKTA+QEL AQ +LL+ +H K
Sbjct: 153 LNRAYKRLDLEHLFMD-----YKTALQELTQAQFCVIPTYQLLQEKGPDHHK 199
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 22.3 bits (46), Expect = 1.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 18 NTKNAPKKSFEEHVHS 33
NTK PK+ F+E +H+
Sbjct: 125 NTKAKPKRVFKEVIHN 140
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 21.9 bits (45), Expect = 2.4
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 31 VHSLERAIDRLNDPNLSLKDGMDL------YKTAMQELFLAQKLLEN---AYLEHEK 78
+ +L++ IDRL S KD +L KT ++EL A+ N A+LE +K
Sbjct: 138 IATLDKRIDRLQKALKSSKDAKNLLECALSLKTHLEELKPAKTFPLNTSEAFLELDK 194
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 21.6 bits (44), Expect = 3.1
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 2 QDELFETEKIPPK--NTKNTKNAPKKSFEEHVHSLERAIDR 40
Q E E EK+ N KNAPK E+ SL+ +++
Sbjct: 818 QLEKLEKEKLKLNLHNENFVKNAPKSVLEKARESLKTLLEK 858
>ref|NP_223630.1| septum formation protein [Helicobacter pylori J99]
Length = 493
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1 MQDELFETEKIPPKNTKNTKNAPKKSFEEHVHSLERAI 38
+++ + +K+ N +N P SF E H +AI
Sbjct: 62 IKEVINSAKKMAGLNADEDRNNPISSFRESYHPKTKAI 99
>ref|NP_223281.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 444
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 2 QDELFETEKIPPKNTKNTKNAPKKS 26
Q+ + ET++ P + +++ K AP+K+
Sbjct: 191 QNSIMETQQDPKELSESCKIAPQKT 215
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 21.6 bits (44), Expect = 3.1
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 9 EKIPPKNTKNTKNAPKKSFEEHVH 32
EK P K T++ P SF++ H
Sbjct: 451 EKTPKPPNKKTQHEPAHSFKKSHH 474
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 21.2 bits (43), Expect = 4.1
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 26 SFEEHVHSLERAIDRLNDPNLSLKDGMDLYKTAMQELFL 64
++ EH+++++ +N + KD + YK LFL
Sbjct: 730 AWREHLYTMDNLKTGINLRGYNQKDPLVEYKKESYNLFL 768
>ref|NP_222998.1| putative [Helicobacter pylori J99]
Length = 290
Score = 21.2 bits (43), Expect = 4.1
Identities = 11/24 (45%), Positives = 12/24 (49%)
Query: 6 FETEKIPPKNTKNTKNAPKKSFEE 29
F EKI P+N K A K F E
Sbjct: 149 FVYEKISPQNRKEVLEASKAWFLE 172
>ref|NP_222976.1| putative [Helicobacter pylori J99]
Length = 217
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (56%)
Query: 54 LYKTAMQELFLAQKLLENAYL 74
L+KT FLAQ L E ++
Sbjct: 26 LHKTCKNRYFLAQDLKEKPFI 46
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 21.2 bits (43), Expect = 4.1
Identities = 13/44 (29%), Positives = 20/44 (44%)
Query: 43 DPNLSLKDGMDLYKTAMQELFLAQKLLENAYLEHEKLQTPDQKA 86
+PN + K A+ E + L+EN + QTP+ KA
Sbjct: 65 NPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKA 108
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 20 KNAPKKSFEEHVHSLERAIDRLNDPNLSLKD 50
+N+ K E +S E+A++ + +L +KD
Sbjct: 61 QNSLKSVIESFDYSKEKALEEIKALDLGVKD 91
Score = 20.8 bits (42), Expect = 5.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 61 ELFLAQKLLENAYLEHEKL 79
E + Q L++NA LE EK+
Sbjct: 145 ESIMQQNLIKNAKLEIEKI 163
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 20.4 bits (41), Expect = 7.0
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 24 KKSFEEHVHSLERAIDRLNDPNLS 47
KK+ E L++AID L + LS
Sbjct: 24 KKALVEVAGDLQKAIDFLREKGLS 47
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 20.4 bits (41), Expect = 7.0
Identities = 13/41 (31%), Positives = 16/41 (38%), Gaps = 3/41 (7%)
Query: 10 KIPPKNTKNTKNAPKKSFEEHVHSLERAIDRLNDPNLSLKD 50
K PK K KN PK + + D L D N K+
Sbjct: 37 KTEPKPAKGVKNKPKSPV---TNVMMTNCDNLKDFNAKQKE 74
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 7 ETEKIPPKNTKNTKNAPKKSFEEHVHS 33
+T K PK K K+ +H HS
Sbjct: 138 QTPKPTPKPIKKEAKKAKEKTTKHAHS 164
>ref|NP_222887.1| sialic acid synthase [Helicobacter pylori J99]
Length = 340
Score = 20.4 bits (41), Expect = 7.0
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 64 LAQKLLENAYLEHEKLQTPD 83
L ++E ++ ++ LQTPD
Sbjct: 217 LGASMIEKHFILNKSLQTPD 236
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 20.0 bits (40), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 64 LAQKLLENAYLEHEKLQTPDQKA 86
LAQ +L+NA + E L+ +Q A
Sbjct: 344 LAQSMLKNAQSQTEILKLANQVA 366
>ref|NP_223509.1| phosphoheptose isomerase [Helicobacter pylori J99]
Length = 192
Score = 20.0 bits (40), Expect = 9.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 24 KKSFEEHVHSLERAIDRLND 43
+K F H +LE++++ L D
Sbjct: 7 QKEFLAHKEALEKSLESLQD 26
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/24 (33%), Positives = 12/24 (49%)
Query: 15 NTKNTKNAPKKSFEEHVHSLERAI 38
NTK KN K H+L++ +
Sbjct: 5 NTKEIKNTRMKKGYSQYHTLKKGL 28
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 20.0 bits (40), Expect = 9.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 2 QDELFETEKIPPKNTKNTKNAPKK 25
+DE++++ +IP N K KK
Sbjct: 520 KDEIYKSSEIPFNRRFNVKGFNKK 543
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.309 0.128 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,844
Number of Sequences: 1491
Number of extensions: 4410
Number of successful extensions: 26
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 86
length of database: 494,079
effective HSP length: 62
effective length of query: 24
effective length of database: 401,637
effective search space: 9639288
effective search space used: 9639288
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.8 bits)
S2: 40 (20.0 bits)