BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644779|ref|NP_206949.1| hypothetical protein
[Helicobacter pylori 26695]
(196 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222859.1| putative [Helicobacter pylori J99] 374 e-106
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 31 0.019
ref|NP_223436.1| putative [Helicobacter pylori J99] 27 0.28
ref|NP_223443.1| putative Outer membrane protein [Helicobac... 27 0.48
ref|NP_223260.1| putative [Helicobacter pylori J99] 26 0.81
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 25 1.1
ref|NP_223812.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 25 1.4
ref|NP_223013.1| putative [Helicobacter pylori J99] 24 3.1
ref|NP_222813.1| putative [Helicobacter pylori J99] 23 4.0
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 23 5.3
ref|NP_223245.1| putative [Helicobacter pylori J99] 23 5.3
ref|NP_223870.1| putative DNA poymerase III subunit delta' ... 23 6.9
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 23 6.9
ref|NP_224153.1| putative [Helicobacter pylori J99] 22 9.0
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 22 9.0
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 22 9.0
ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 9.0
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 22 9.0
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 374 bits (960), Expect = e-106
Identities = 184/193 (95%), Positives = 187/193 (96%)
Query: 1 MKEKNFWPLGIMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN 60
MKEKNFWPLGIMSVLI GLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN
Sbjct: 1 MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYEN 60
Query: 61 FKSNYRFLVGLKPLIKSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPL 120
FKSNYRF VGLKPL +SPKTPILPYFSKGTHGDKK+QENLLNNALILEKSNTLYAQLQPL
Sbjct: 61 FKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLNNALILEKSNTLYAQLQPL 120
Query: 121 KPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFDLLESDKMGRYKILFKFVFKN 180
KPALDSPNIQVYLAFYPS SQPR LGTLDCKNACEPLKFDLLE DK+GRYKILFKFVFKN
Sbjct: 121 KPALDSPNIQVYLAFYPSQSQPRLLGTLDCKNACEPLKFDLLEGDKVGRYKILFKFVFKN 180
Query: 181 KEELILEQLAFFK 193
KEELILEQLAFFK
Sbjct: 181 KEELILEQLAFFK 193
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 31.2 bits (69), Expect = 0.019
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 51 FNAMLKTYENFKSNYRFLVGLKPLIKSPKTPILPYFSKGTH-GDKKLQENLLNNAL--IL 107
FNA+LKT E S+ +FL+ +K P T S+ H KK+ EN + + L IL
Sbjct: 134 FNALLKTLEEPPSHVKFLLATTDALKLPAT----ILSRTQHFRFKKIPENSVISHLKTIL 189
Query: 108 EKSNTLY 114
EK Y
Sbjct: 190 EKEQVSY 196
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 27.3 bits (59), Expect = 0.28
Identities = 21/90 (23%), Positives = 36/90 (39%), Gaps = 3/90 (3%)
Query: 30 LKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKS---NYRFLVGLKPLIKSPKTPILPYF 86
L+N+ N Y N+ L + L E +Y+ +G+ SP +P++ Y
Sbjct: 184 LQNTTINTPTYVPTVNKTQLENHTELSLSERLYFGGIDYKEQLGMLATFISPNSPVIEYD 243
Query: 87 SKGTHGDKKLQENLLNNALILEKSNTLYAQ 116
G G++ Q N + + N Y Q
Sbjct: 244 DDGLIGERLRQITESLNVEVKHQENISYKQ 273
>ref|NP_223443.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 499
Score = 26.6 bits (57), Expect = 0.48
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 7/69 (10%)
Query: 20 GIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKSNYRFLVGLKPLIKSPK 79
G+ F +++ K VYF NE D NF TY+ SN F GL ++
Sbjct: 267 GVHAFYIIWNYKGFSIQPFVYFSPFNEYDPNFTI---TYD---SNPTF-TGLGFRSQTDV 319
Query: 80 TPILPYFSK 88
T + P+++K
Sbjct: 320 TVLNPFYAK 328
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 25.8 bits (55), Expect = 0.81
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 5 NFWPLGIMSVLILGLGIVVFLVVFALKNSP 34
N + L ++ +LI +G+ F + LK+SP
Sbjct: 9 NLFSLAVLGILIFPVGLANFYFGYVLKDSP 38
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 25.4 bits (54), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (61%)
Query: 13 SVLILGLGIVVFLVVFALKNSPKNDLVYF 41
S++I+ LG++ L +F L N K VYF
Sbjct: 363 SLIIVALGLIWGLSLFLLHNPSKQKNVYF 391
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 25.0 bits (53), Expect = 1.4
Identities = 10/26 (38%), Positives = 19/26 (72%)
Query: 9 LGIMSVLILGLGIVVFLVVFALKNSP 34
LGI+ ++++ + I+ +VV AL +SP
Sbjct: 165 LGILGIMLIIIAILAMVVVKALAHSP 190
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 25.0 bits (53), Expect = 1.4
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Query: 145 LGTLDCKNACEPLKFDLLESDKMGRYKILFKFVFKNKEELILEQLAF 191
LG KN E F + ++ YK + +++ KNK+ L+L+ AF
Sbjct: 200 LGMSSIKNELEDKSFYYIYPEE---YKNIKEYLHKNKQSLLLKLNAF 243
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 23.9 bits (50), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (65%)
Query: 5 NFWPLGIMSVLILGLGIVVFLVVF 28
N W LG VL+ LG+++FL +F
Sbjct: 83 NVWRLGGYGVLLGILGVLLFLHLF 106
>ref|NP_222813.1| putative [Helicobacter pylori J99]
Length = 368
Score = 23.5 bits (49), Expect = 4.0
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 101 LNNALILEKSNTLYAQLQPLKPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFD 160
++N L+K+ +A + + +PNI Y + L D K CE L +
Sbjct: 9 VDNLYFLKKAKEAFAG-EKIVGFFYNPNIHPYSEYL--------LRLEDVKRTCEMLGIE 59
Query: 161 LLESDKMGRYKILFKFVFKNKEELIL 186
LLE D Y+ L KF+ K K + +L
Sbjct: 60 LLEGD----YE-LEKFLDKAKGKELL 80
Score = 22.7 bits (47), Expect = 6.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 45 NEVDLNFNAMLKTYENFKSNY 65
+E+DLN A+ + E ++ NY
Sbjct: 153 SELDLNLQALARENELYRQNY 173
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 23.1 bits (48), Expect = 5.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 21 IVVFLVVFALKNSPKNDLVYF 41
I+ L+VFALKN + L +F
Sbjct: 870 IIFILIVFALKNLTNSLLCFF 890
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 23.1 bits (48), Expect = 5.3
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 13 SVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENF-KSNYRFLVGL 71
+ +GL IV+FL++ + SP Y HN+ + T K N
Sbjct: 11 AAFFVGLFIVLFLIIMKHQTSP-----YAFTHNQALVTQTPPYFTQLTIPKPNDALSAHA 65
Query: 72 KPLIKSPKTPILPYFSKGTH---GDKKLQENLLNN 103
LI P +L + GT D K+ NL ++
Sbjct: 66 SSLISLPNDNLLSAYFSGTKEGARDVKISANLFDS 100
>ref|NP_223870.1| putative DNA poymerase III subunit delta' [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 6.9
Identities = 35/138 (25%), Positives = 57/138 (40%), Gaps = 18/138 (13%)
Query: 61 FKSNYRFLVGL----KPLIKSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTLYAQ 116
FK + +F + K +IK+ +K L+ + LN LI S + AQ
Sbjct: 24 FKHHIKFYTEIIEKDKKVIKTFNKDFKIEHAKEVISKAHLKHSELNAFLIAAPSYGVEAQ 83
Query: 117 LQPLKPALDSPNIQVYLAFYPSPSQPRWLGTLDCKNACEPLKFDLLESDKMGRYKILFKF 176
LK + PN ++ F SP+ + +K L++ DK R KI K
Sbjct: 84 NALLKILEEPPNNVCFIMFAKSPN-----------HVLATIKSRLIKEDK--RQKIPLKP 130
Query: 177 VFKNKEELILEQL-AFFK 193
+ + +L L+ + AF K
Sbjct: 131 LDLDLSKLDLKDIYAFLK 148
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 22.7 bits (47), Expect = 6.9
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 11 IMSVLILGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKSNY 65
I++ LILG+ ++ FLV + N + K + V+ N N K+N+
Sbjct: 302 IITTLILGVLVLAFLVFIIISN------LITKRISRVNNTLNDFFNLLNNPKNNH 350
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 22.3 bits (46), Expect = 9.0
Identities = 7/15 (46%), Positives = 13/15 (86%)
Query: 25 LVVFALKNSPKNDLV 39
L+VF KN+PK++++
Sbjct: 372 LIVFCQKNTPKDEVI 386
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 22.3 bits (46), Expect = 9.0
Identities = 13/29 (44%), Positives = 14/29 (47%)
Query: 79 KTPILPYFSKGTHGDKKLQENLLNNALIL 107
KTP L YFSK H L L N +L
Sbjct: 12 KTPPLTYFSKERHLKGALVNIPLRNKTLL 40
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 22.3 bits (46), Expect = 9.0
Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 2/43 (4%)
Query: 73 PLI--KSPKTPILPYFSKGTHGDKKLQENLLNNALILEKSNTL 113
PLI K K P + YF T G K + ++L +++K N +
Sbjct: 121 PLITRKILKQPGVKYFGPFTSGAKDILDSLYELLPLVQKKNCI 163
>ref|NP_222965.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 390
Score = 22.3 bits (46), Expect = 9.0
Identities = 20/53 (37%), Positives = 26/53 (48%), Gaps = 4/53 (7%)
Query: 84 PYFSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPLKPALDSPNIQVYLAFY 136
P S+G D+KL+E N LI K+N Y + LK + D N L FY
Sbjct: 220 PLKSRGWSSDEKLKELYYQNRLIF-KNNRPYEKYY-LKESQD--NCLSVLDFY 268
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 22.3 bits (46), Expect = 9.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 86 FSKGTHGDKKLQENLLNNALILEKSNTLYAQLQPLKPALDSPNIQVYLA 134
F+ T D+ +N+LN+A K L Q++ + S I YLA
Sbjct: 303 FNPYTSADRAFAQNMLNHAQAQAKILELADQMKKDLNTIPSQFITNYLA 351
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.142 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,632
Number of Sequences: 1491
Number of extensions: 12663
Number of successful extensions: 55
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 21
length of query: 196
length of database: 494,079
effective HSP length: 73
effective length of query: 123
effective length of database: 385,236
effective search space: 47384028
effective search space used: 47384028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)