BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646093|ref|NP_208275.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(148 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_224095.1| putative [Helicobacter pylori J99] 282 2e-78
ref|NP_223812.1| putative [Helicobacter pylori J99] 25 0.68
ref|NP_222881.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_224017.1| putative ribonuclease N [Helicobacter pylo... 23 3.4
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 23 4.4
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 23 4.4
ref|NP_223008.1| putative [Helicobacter pylori J99] 23 4.4
ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99] 23 4.4
ref|NP_224109.1| putative [Helicobacter pylori J99] 22 5.8
ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PRO... 22 7.5
ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori... 22 7.5
ref|NP_223376.1| putative [Helicobacter pylori J99] 22 7.5
ref|NP_224212.1| putative [Helicobacter pylori J99] 22 9.9
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 22 9.9
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 22 9.9
ref|NP_223143.1| Molybdate ABC transporter, periplasmic-bin... 22 9.9
>ref|NP_224095.1| putative [Helicobacter pylori J99]
Length = 148
Score = 282 bits (722), Expect = 2e-78
Identities = 139/148 (93%), Positives = 142/148 (95%)
Query: 1 MGFLNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFI 60
M FL+GYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFI
Sbjct: 1 MEFLSGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFI 60
Query: 61 ASPAMGFTLITGILMLLIEPTLFKSGGWLHAKLALVVLLLAYHFYCKKCMRELEKDPTRR 120
ASPAMGFTLITGILMLLI P +FKSGGWLHAKLALVVLLL YHFYCKKCMRELEKDPT +
Sbjct: 61 ASPAMGFTLITGILMLLIAPEMFKSGGWLHAKLALVVLLLIYHFYCKKCMRELEKDPTGK 120
Query: 121 NARFYRVFNEAPTILMILIVILVVVKPF 148
NARFYRVFNE PTILMILIVILVVVKPF
Sbjct: 121 NARFYRVFNEIPTILMILIVILVVVKPF 148
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 25.4 bits (54), Expect = 0.68
Identities = 14/39 (35%), Positives = 24/39 (60%), Gaps = 2/39 (5%)
Query: 69 LITGILMLLIEPTLFKSGGWLHAKLALV--VLLLAYHFY 105
++ G+ +LL+ LFK G + A ++ + VL+LA FY
Sbjct: 552 MLAGMALLLVTVVLFKMGRFKGAIISALPAVLILAITFY 590
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 24.6 bits (52), Expect = 1.2
Identities = 18/59 (30%), Positives = 25/59 (41%), Gaps = 15/59 (25%)
Query: 2 GFLNGYFLWVKAFHVIAVISWM-----------AALFYLPRLFVYHAENAHKKEFVGVV 49
GF G F WV V +I W+ A++FY P + Y H+K + VV
Sbjct: 66 GFFAGVFAWVFKALVYFLIFWIVILLSLVINIFASIFYTPLVVSY----LHQKYYPHVV 120
>ref|NP_224017.1| putative ribonuclease N [Helicobacter pylori J99]
Length = 292
Score = 23.1 bits (48), Expect = 3.4
Identities = 14/57 (24%), Positives = 23/57 (39%)
Query: 4 LNGYFLWVKAFHVIAVISWMAALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFI 60
L+ F + + ++S L ++ LFV H AH E ++ KL I
Sbjct: 30 LSELFYYASSLSFYTILSLSPILLFVFSLFVSHYLQAHSGEMEALIFPNAPKLIGAI 86
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 22.7 bits (47), Expect = 4.4
Identities = 14/30 (46%), Positives = 16/30 (52%)
Query: 44 EFVGVVQIQEKKLYSFIASPAMGFTLITGI 73
EFVG+V KL F +G TLIT I
Sbjct: 403 EFVGIVPDNLWKLKRFNQDWRVGDTLITAI 432
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 22.7 bits (47), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 7 YFLWVKAFHVIAVISWMAALFYL 29
YF + AF+ I V+ W+ L YL
Sbjct: 178 YFPYRNAFYDIGVLVWVFLLGYL 200
>ref|NP_223008.1| putative [Helicobacter pylori J99]
Length = 360
Score = 22.7 bits (47), Expect = 4.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 39 NAHKKEFVGVVQIQEKKLYSFIASPAMGF 67
N K+F + ++ +KL +F P +GF
Sbjct: 288 NEMTKDFCAFLNLEAQKLNAFDLEPYLGF 316
>ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 4.4
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 10/81 (12%)
Query: 25 ALFYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIEPTLFK 84
ALF + +F+ + + V + E L+ PA+ + G++++L+
Sbjct: 38 ALFMIAHMFLVSSILISDEAMYKVAKFFEGSLFLKAGEPAIVSVVAAGVILILV------ 91
Query: 85 SGGWLHAKLALVVLLLAYHFY 105
HA LAL + Y Y
Sbjct: 92 ----AHAFLALRKFPINYRQY 108
>ref|NP_224109.1| putative [Helicobacter pylori J99]
Length = 355
Score = 22.3 bits (46), Expect = 5.8
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 82 LFKSGGWLHAKLALVVLLLAYHFY 105
LF+ GW + K L+VLL F+
Sbjct: 3 LFRFVGWYYFKYFLIVLLALELFF 26
>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 841
Score = 21.9 bits (45), Expect = 7.5
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 27 FYLPRLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMG 66
F P F++ A +K +G+ + YS I++ A G
Sbjct: 702 FVSPFQFIFDARYNWRKTTIGISSYFYSRAYSGISNSAAG 741
>ref|NP_223912.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 492
Score = 21.9 bits (45), Expect = 7.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 58 SFIASPAMGFTLITGILML-----------LIEPTLFKSGG-WLHAKLALVVLLLAYH 103
+F A AM F L+TG L L + P LF G +L + V L+ +H
Sbjct: 175 AFFAMGAMAFYLLTGSLNLEVITLYLHTEGITNPMLFAMGTIFLIGAIGFKVSLVPFH 232
>ref|NP_223376.1| putative [Helicobacter pylori J99]
Length = 152
Score = 21.9 bits (45), Expect = 7.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 91 AKLALVVLLLAYHFYCKKCMRELEKDPTRRNARFYRVFNEAPT 133
AK+A VV Y K+ + +EK P + F++ +E T
Sbjct: 32 AKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYAT 74
>ref|NP_224212.1| putative [Helicobacter pylori J99]
Length = 253
Score = 21.6 bits (44), Expect = 9.9
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 81 TLFKSGGWLHAKLALVV 97
TLFK GG+ +LA++V
Sbjct: 155 TLFKMGGFKSYQLAVIV 171
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 21.6 bits (44), Expect = 9.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 58 SFIASPAMGFTLITGILMLLIEPTLFKSGGWLHAKLALVVLLLA 101
S++ SP MG LI ++LI+ T+ A L +V L+A
Sbjct: 185 SWVISPLMG-ALIAMFFLMLIKKTIAYKEDKKSAALKVVPYLVA 227
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 21.6 bits (44), Expect = 9.9
Identities = 10/35 (28%), Positives = 19/35 (53%)
Query: 39 NAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGI 73
N++ E +G + + + KLY +P + LIT +
Sbjct: 146 NSYHGETLGALSVGDVKLYKDTYTPLLLKNLITPV 180
>ref|NP_223143.1| Molybdate ABC transporter, periplasmic-binding protein
[Helicobacter pylori J99]
Length = 246
Score = 21.6 bits (44), Expect = 9.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 31 RLFVYHAENAHKKEFVGVVQIQEKKLYSFIASPAMGFTLITGILMLLIE 79
+L+ A+NA F+ + KKLY +P G+L+L E
Sbjct: 61 KLYAQIAQNAPFDLFISADIARPKKLYDEKITPFKEEVYAKGVLVLWSE 109
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.334 0.146 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,276
Number of Sequences: 1491
Number of extensions: 6107
Number of successful extensions: 41
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 16
length of query: 148
length of database: 494,079
effective HSP length: 70
effective length of query: 78
effective length of database: 389,709
effective search space: 30397302
effective search space used: 30397302
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 44 (21.6 bits)